SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    349601 5gm2:H (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349602 5gm2:H (2.8) BS02 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349603 5gm2:H (2.8) BS03 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349604 5gm2:I (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349605 5gm2:I (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349606 5gm2:I (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349607 5gm2:I (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349608 5gm2:J (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349609 5gm2:J (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349610 5gm2:J (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349611 5gm2:J (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349612 5gm2:K (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349613 5gm2:K (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349614 5gm2:K (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349615 5gm2:K (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349616 5gm2:L (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349617 5gm2:L (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349618 5gm2:L (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349619 5gm2:L (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349620 5gm2:M (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349621 5gm2:M (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349622 5gm2:M (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349623 5gm2:M (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349624 5gm2:N (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349625 5gm2:N (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349626 5gm2:N (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349627 5gm2:N (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349628 5gm2:O (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349629 5gm2:O (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349630 5gm2:O (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349631 5gm2:O (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349632 5gm2:P (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349633 5gm2:P (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349634 5gm2:P (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349635 5gm2:P (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349636 5gm2:Q (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349637 5gm2:Q (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349638 5gm2:Q (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349639 5gm2:Q (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349640 5gm2:R (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349641 5gm2:R (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349642 5gm2:R (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    349643 5gm2:R (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    349644 5gm4:A (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349645 5gm4:A (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349646 5gm4:A (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349647 5gm4:A (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349648 5gm4:A (1.92) BS05 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349649 5gm4:B (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349650 5gm4:B (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349651 5gm4:B (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349652 5gm4:B (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349653 5gm4:C (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349654 5gm4:C (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349655 5gm4:C (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349656 5gm4:C (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349657 5gm4:D (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349658 5gm4:D (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349659 5gm4:D (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349660 5gm4:D (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349661 5gm4:E (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349662 5gm4:E (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349663 5gm4:E (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349664 5gm4:E (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349665 5gm4:F (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349666 5gm4:F (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349667 5gm4:F (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349668 5gm4:G (1.92) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349669 5gm4:G (1.92) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349670 5gm4:G (1.92) BS03 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349671 5gm4:G (1.92) BS04 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349672 5gm5:A (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349673 5gm5:A (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349674 5gm5:D (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349675 5gm5:D (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349676 5gm5:F (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349677 5gm5:F (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349678 5gm5:G (1.73) BS01 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349679 5gm5:G (1.73) BS02 BGC 3.2.1.4 GO:0000272 ... P22669 27470581
    349680 5gm6:A (3.5) BS01 rna ? GO:0000244 ... P33334 27445306
    349681 5gm6:A (3.5) BS02 rna ? GO:0000244 ... P33334 27445306
    349682 5gm6:A (3.5) BS03 rna ? GO:0000244 ... P33334 27445306
    349683 5gm6:A (3.5) BS04 rna ? GO:0000244 ... P33334 27445306
    349684 5gm6:A (3.5) BS05 peptide ? GO:0000244 ... P33334 27445306
    349685 5gm6:C (3.5) BS01 rna ? GO:0000244 ... P36048 27445306
    349686 5gm6:C (3.5) BS02 GTP ? GO:0000244 ... P36048 27445306
    349687 5gm6:G (3.5) BS01 rna ? GO:0000245 ... P49955 27445306
    349688 5gm6:G (3.5) BS02 rna ? GO:0000245 ... P49955 27445306
    349689 5gm6:H (3.5) BS01 rna ? GO:0000245 ... Q02554 27445306
    349690 5gm6:H (3.5) BS02 rna ? GO:0000245 ... Q02554 27445306
    349691 5gm6:I (3.5) BS01 rna ? GO:0000245 ... Q07350 27445306
    349692 5gm6:I (3.5) BS02 rna ? GO:0000245 ... Q07350 27445306
    349693 5gm6:I (3.5) BS03 rna ? GO:0000245 ... Q07350 27445306
    349694 5gm6:I (3.5) BS04 rna ? GO:0000245 ... Q07350 27445306
    349695 5gm6:I (3.5) BS05 rna ? GO:0000245 ... Q07350 27445306
    349696 5gm6:I (3.5) BS06 ZN ? GO:0000245 ... Q07350 27445306
    349697 5gm6:J (3.5) BS01 rna ? GO:0000245 ... Q06835 27445306
    349698 5gm6:J (3.5) BS02 rna ? GO:0000245 ... Q06835 27445306
    349699 5gm6:J (3.5) BS03 ZN ? GO:0000245 ... Q06835 27445306
    349700 5gm6:J (3.5) BS04 ZN ? GO:0000245 ... Q06835 27445306
    349701 5gm6:J (3.5) BS05 ZN ? GO:0000245 ... Q06835 27445306
    349702 5gm6:P (3.5) BS01 rna ? GO:0000350 ... P28004 27445306
    349703 5gm6:P (3.5) BS02 rna ? GO:0000350 ... P28004 27445306
    349704 5gm6:Q (3.5) BS01 rna ? GO:0000398 ... P38241 27445306
    349705 5gm6:Q (3.5) BS02 ZN ? GO:0000398 ... P38241 27445306
    349706 5gm6:Q (3.5) BS03 ZN ? GO:0000398 ... P38241 27445306
    349707 5gm6:R (3.5) BS01 rna ? GO:0000387 ... Q12046 27445306
    349708 5gm6:R (3.5) BS02 rna ? GO:0000387 ... Q12046 27445306
    349709 5gm6:R (3.5) BS03 ZN ? GO:0000387 ... Q12046 27445306
    349710 5gm6:S (3.5) BS01 rna ? GO:0000398 ... Q03772 27445306
    349711 5gm6:S (3.5) BS02 rna ? GO:0000398 ... Q03772 27445306
    349712 5gm6:T (3.5) BS01 rna ? GO:0000282 ... P25337 27445306
    349713 5gm6:T (3.5) BS02 rna ? GO:0000282 ... P25337 27445306
    349714 5gm6:T (3.5) BS03 peptide ? GO:0000282 ... P25337 27445306
    349715 5gm6:T (3.5) BS04 ZN ? GO:0000282 ... P25337 27445306
    349716 5gm6:T (3.5) BS05 ZN ? GO:0000282 ... P25337 27445306
    349717 5gm6:T (3.5) BS06 ZN ? GO:0000282 ... P25337 27445306
    349718 5gm6:V (3.5) BS01 rna ? GO:0000245 ... P40565 27445306
    349719 5gm6:Y (3.5) BS01 MG 3.6.4.13 GO:0000349 ... P20095 27445306
    349720 5gm6:Y (3.5) BS02 ADP 3.6.4.13 GO:0000349 ... P20095 27445306
    349721 5gm6:Z (3.5) BS01 peptide ? GO:0000398 ... P53333 27445306
    349722 5gm6:a (3.5) BS01 rna ? GO:0000349 ... P53769 27445306
    349723 5gm6:a (3.5) BS02 ZN ? GO:0000349 ... P53769 27445306
    349724 5gm6:a (3.5) BS03 ZN ? GO:0000349 ... P53769 27445306
    349725 5gm6:a (3.5) BS04 ZN ? GO:0000349 ... P53769 27445306
    349726 5gm6:c (3.5) BS01 rna ? GO:0000350 ... Q03654 27445306
    349727 5gm6:c (3.5) BS02 rna ? GO:0000350 ... Q03654 27445306
    349728 5gm6:d (3.5) BS01 rna ? GO:0000398 ... Q12309 27445306
    349729 5gm6:e (3.5) BS01 rna ? GO:0000398 ... Q99181 27445306
    349730 5gm6:f (3.5) BS01 rna ? GO:0000384 ... P53277 27445306
    349731 5gm6:f (3.5) BS02 rna ? GO:0000384 ... P53277 27445306
    349732 5gm6:g (3.5) BS01 rna ? GO:0003723 ... Q06217 27445306
    349733 5gm6:h (3.5) BS01 rna ? GO:0000243 ... P54999 27445306
    349734 5gm6:i (3.5) BS01 rna ? GO:0000243 ... Q12330 27445306
    349735 5gm6:j (3.5) BS01 rna ? GO:0000243 ... P40204 27445306
    349736 5gm6:k (3.5) BS01 rna ? GO:0000243 ... P40018 27445306
    349737 5gm6:l (3.5) BS01 rna ? GO:0000243 ... P43321 27445306
    349738 5gm6:m (3.5) BS01 rna ? GO:0000243 ... Q02260 27445306
    349739 5gm8:A (2.2) BS01 SFG 2.1.1.200 GO:0003723 ... A0A072ZPM2 27683218
    349740 5gm8:B (2.2) BS01 SFG 2.1.1.200 GO:0003723 ... A0A072ZPM2 27683218
    349741 5gm8:C (2.2) BS01 SFG 2.1.1.200 GO:0003723 ... A0A072ZPM2 27683218
    349742 5gm8:D (2.2) BS01 SFG 2.1.1.200 GO:0003723 ... A0A072ZPM2 27683218
    349743 5gm9:A (1.36) BS01 GLC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    349744 5gm9:A (1.36) BS02 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    349745 5gm9:A (1.36) BS03 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    349746 5gm9:A (1.36) BS04 BGC 3.2.1.4 GO:0005975 ... G2QVH7 28193329
    349747 5gmd:A (1.5) BS01 DP6 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349748 5gmd:A (1.5) BS02 AGS 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349749 5gmd:A (1.5) BS03 AMP 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349750 5gme:A (1.7) BS01 DP6 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349751 5gme:A (1.7) BS02 ADP 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349752 5gme:A (1.7) BS03 AMP 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    349753 5gmf:A (2.5) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349754 5gmf:A (2.5) BS02 GMP ? GO:0002224 ... B3Y653 27742543
    349755 5gmf:A (2.5) BS03 GMP ? GO:0002224 ... B3Y653 27742543
    349756 5gmf:B (2.5) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349757 5gmf:B (2.5) BS02 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349758 5gmf:B (2.5) BS03 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349759 5gmf:C (2.5) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349760 5gmf:C (2.5) BS02 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349761 5gmf:C (2.5) BS03 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349762 5gmf:D (2.5) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349763 5gmf:D (2.5) BS02 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349764 5gmf:D (2.5) BS03 GMP ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=1uM
    349765 5gmg:A (2.6) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349766 5gmg:A (2.6) BS02 SDL ? GO:0002224 ... B3Y653 27742543
    349767 5gmg:A (2.6) BS03 SDL ? GO:0002224 ... B3Y653 27742543
    349768 5gmg:B (2.6) BS01 rna ? GO:0002224 ... B3Y653 27742543
    349769 5gmg:B (2.6) BS02 SDL ? GO:0002224 ... B3Y653 27742543
    349770 5gmg:B (2.6) BS03 SDL ? GO:0002224 ... B3Y653 27742543
    349771 5gmh:A (2.2) BS01 RX8 ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=0.49uM
    349772 5gmh:A (2.2) BS02 RX8 ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=0.49uM
    349773 5gmh:B (2.2) BS01 RX8 ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=0.49uM
    349774 5gmh:B (2.2) BS02 RX8 ? GO:0002224 ... B3Y653 27742543 MOAD: Kd=0.49uM
    349775 5gmi:A (2.71) BS01 peptide ? N/A Q99JX3 28617811
    349776 5gmi:B (2.71) BS01 peptide ? N/A Q99JX3 28617811
    349777 5gmj:A (2.986) BS01 peptide ? N/A Q99JX3 28617811
    349778 5gmj:B (2.986) BS01 peptide ? N/A Q99JX3 28617811
    349779 5gmk:A (3.4) BS01 rna ? GO:0000244 ... P33334 27445308
    349780 5gmk:A (3.4) BS02 rna ? GO:0000244 ... P33334 27445308
    349781 5gmk:A (3.4) BS03 rna ? GO:0000244 ... P33334 27445308
    349782 5gmk:A (3.4) BS04 rna ? GO:0000244 ... P33334 27445308
    349783 5gmk:A (3.4) BS05 rna ? GO:0000244 ... P33334 27445308
    349784 5gmk:A (3.4) BS06 rna ? GO:0000244 ... P33334 27445308
    349785 5gmk:A (3.4) BS07 peptide ? GO:0000244 ... P33334 27445308
    349786 5gmk:C (3.4) BS01 rna ? GO:0000244 ... P36048 27445308
    349787 5gmk:C (3.4) BS02 GTP ? GO:0000244 ... P36048 27445308
    349788 5gmk:C (3.4) BS03 MG ? GO:0000244 ... P36048 27445308
    349789 5gmk:F (3.4) BS01 rna ? GO:0000349 ... P28320 27445308
    349790 5gmk:F (3.4) BS02 rna ? GO:0000349 ... P28320 27445308
    349791 5gmk:F (3.4) BS03 rna ? GO:0000349 ... P28320 27445308
    349792 5gmk:F (3.4) BS04 rna ? GO:0000349 ... P28320 27445308
    349793 5gmk:F (3.4) BS05 ZN ? GO:0000349 ... P28320 27445308
    349794 5gmk:G (3.4) BS01 rna ? GO:0000398 ... P53854 27445308
    349795 5gmk:G (3.4) BS02 rna ? GO:0000398 ... P53854 27445308
    349796 5gmk:H (3.4) BS01 rna ? GO:0000350 ... P21374 27445308
    349797 5gmk:H (3.4) BS02 rna ? GO:0000350 ... P21374 27445308
    349798 5gmk:H (3.4) BS03 rna ? GO:0000350 ... P21374 27445308
    349799 5gmk:I (3.4) BS01 rna ? GO:0000384 ... P53277 27445308
    349800 5gmk:I (3.4) BS02 rna ? GO:0000384 ... P53277 27445308

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).