SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34801 1n2z:A (2.0) BS01 CNC ? GO:0015889 ... P37028 12475936
    34802 1n2z:B (2.0) BS01 CNC ? GO:0015889 ... P37028 12475936
    34803 1n31:A (2.2) BS01 PLP 4.4.1.- N/A A0ACD6B834 12386155
    34804 1n31:A (2.2) BS02 CYS 4.4.1.- N/A A0ACD6B834 12386155
    34805 1n31:A (2.2) BS03 CYS 4.4.1.- N/A A0ACD6B834 12386155
    34806 1n31:A (2.2) BS04 CYS 4.4.1.- N/A A0ACD6B834 12386155
    34807 1n31:A (2.2) BS05 PLP 4.4.1.- N/A A0ACD6B834 12386155
    34808 1n31:B (2.2) BS01 PLP 4.4.1.- N/A A0ACD6B834 12386155
    34809 1n31:B (2.2) BS02 PLP 4.4.1.- N/A A0ACD6B834 12386155
    34810 1n31:B (2.2) BS03 CYS 4.4.1.- N/A A0ACD6B834 12386155
    34811 1n32:B (3.0) BS01 rna ? GO:0003735 ... P80371 12464183
    34812 1n32:C (3.0) BS01 rna ? GO:0003676 ... P80372 12464183
    34813 1n32:D (3.0) BS01 rna ? GO:0003723 ... P80373 12464183
    34814 1n32:D (3.0) BS02 MG ? GO:0003723 ... P80373 12464183
    34815 1n32:E (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 12464183
    34816 1n32:E (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 12464183
    34817 1n32:F (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 12464183
    34818 1n32:G (3.0) BS01 rna ? GO:0000049 ... P17291 12464183
    34819 1n32:H (3.0) BS01 rna ? GO:0003735 ... P0DOY9 12464183
    34820 1n32:I (3.0) BS01 rna ? GO:0003723 ... P80374 12464183
    34821 1n32:J (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 12464183
    34822 1n32:K (3.0) BS01 rna ? GO:0003735 ... P80376 12464183
    34823 1n32:L (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 12464183
    34824 1n32:L (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 12464183
    34825 1n32:M (3.0) BS01 rna ? GO:0000049 ... P80377 12464183
    34826 1n32:M (3.0) BS02 MG ? GO:0000049 ... P80377 12464183
    34827 1n32:N (3.0) BS01 rna ? GO:0003735 ... P0DOY6 12464183
    34828 1n32:O (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 12464183
    34829 1n32:P (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 12464183
    34830 1n32:Q (3.0) BS01 rna ? GO:0003735 ... P0DOY7 12464183
    34831 1n32:R (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 12464183
    34832 1n32:S (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 12464183
    34833 1n32:T (3.0) BS01 rna ? GO:0003723 ... P80380 12464183
    34834 1n33:B (3.35) BS01 rna ? GO:0003735 ... P80371 12464183
    34835 1n33:C (3.35) BS01 rna ? GO:0003676 ... P80372 12464183
    34836 1n33:D (3.35) BS01 rna ? GO:0003723 ... P80373 12464183
    34837 1n33:D (3.35) BS02 ZN ? GO:0003723 ... P80373 12464183
    34838 1n33:E (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 12464183
    34839 1n33:F (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 12464183
    34840 1n33:G (3.35) BS01 rna ? GO:0000049 ... P17291 12464183
    34841 1n33:H (3.35) BS01 rna ? GO:0003735 ... P0DOY9 12464183
    34842 1n33:I (3.35) BS01 rna ? GO:0003723 ... P80374 12464183
    34843 1n33:J (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 12464183
    34844 1n33:K (3.35) BS01 rna ? GO:0003735 ... P80376 12464183
    34845 1n33:L (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 12464183
    34846 1n33:L (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 12464183
    34847 1n33:M (3.35) BS01 rna ? GO:0000049 ... P80377 12464183
    34848 1n33:N (3.35) BS01 rna ? GO:0003735 ... P0DOY6 12464183
    34849 1n33:N (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 12464183
    34850 1n33:O (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 12464183
    34851 1n33:P (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 12464183
    34852 1n33:Q (3.35) BS01 rna ? GO:0003735 ... P0DOY7 12464183
    34853 1n33:R (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 12464183
    34854 1n33:S (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 12464183
    34855 1n33:T (3.35) BS01 rna ? GO:0003723 ... P80380 12464183
    34856 1n34:B (3.8) BS01 rna ? GO:0003735 ... P80371 12464183
    34857 1n34:C (3.8) BS01 rna ? GO:0003676 ... P80372 12464183
    34858 1n34:D (3.8) BS01 rna ? GO:0003723 ... P80373 12464183
    34859 1n34:D (3.8) BS02 ZN ? GO:0003723 ... P80373 12464183
    34860 1n34:E (3.8) BS01 rna ? GO:0003723 ... Q5SHQ5 12464183
    34861 1n34:F (3.8) BS01 rna ? GO:0003735 ... Q5SLP8 12464183
    34862 1n34:G (3.8) BS01 rna ? GO:0000049 ... P17291 12464183
    34863 1n34:H (3.8) BS01 rna ? GO:0003735 ... P0DOY9 12464183
    34864 1n34:I (3.8) BS01 rna ? GO:0003723 ... P80374 12464183
    34865 1n34:J (3.8) BS01 rna ? GO:0000049 ... Q5SHN7 12464183
    34866 1n34:K (3.8) BS01 rna ? GO:0003735 ... P80376 12464183
    34867 1n34:L (3.8) BS01 rna ? GO:0000049 ... Q5SHN3 12464183
    34868 1n34:M (3.8) BS01 rna ? GO:0000049 ... P80377 12464183
    34869 1n34:N (3.8) BS01 rna ? GO:0003735 ... P0DOY6 12464183
    34870 1n34:N (3.8) BS02 ZN ? GO:0003735 ... P0DOY6 12464183
    34871 1n34:O (3.8) BS01 rna ? GO:0003735 ... Q5SJ76 12464183
    34872 1n34:P (3.8) BS01 rna ? GO:0003735 ... Q5SJH3 12464183
    34873 1n34:Q (3.8) BS01 rna ? GO:0003735 ... P0DOY7 12464183
    34874 1n34:R (3.8) BS01 rna ? GO:0003735 ... Q5SLQ0 12464183
    34875 1n34:S (3.8) BS01 rna ? GO:0000028 ... Q5SHP2 12464183
    34876 1n34:T (3.8) BS01 rna ? GO:0003723 ... P80380 12464183
    34877 1n35:A (2.5) BS01 rna 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34878 1n35:A (2.5) BS02 rna 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34879 1n35:A (2.5) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34880 1n35:A (2.5) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34881 1n35:A (2.5) BS05 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34882 1n35:A (2.5) BS06 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34883 1n35:A (2.5) BS07 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34884 1n36:B (3.65) BS01 rna ? GO:0003735 ... P80371 12464183
    34885 1n36:C (3.65) BS01 rna ? GO:0003676 ... P80372 12464183
    34886 1n36:D (3.65) BS01 rna ? GO:0003723 ... P80373 12464183
    34887 1n36:D (3.65) BS02 ZN ? GO:0003723 ... P80373 12464183
    34888 1n36:E (3.65) BS01 rna ? GO:0003723 ... Q5SHQ5 12464183
    34889 1n36:F (3.65) BS01 rna ? GO:0003735 ... Q5SLP8 12464183
    34890 1n36:G (3.65) BS01 rna ? GO:0000049 ... P17291 12464183
    34891 1n36:H (3.65) BS01 rna ? GO:0003735 ... P0DOY9 12464183
    34892 1n36:I (3.65) BS01 rna ? GO:0003723 ... P80374 12464183
    34893 1n36:J (3.65) BS01 rna ? GO:0000049 ... Q5SHN7 12464183
    34894 1n36:K (3.65) BS01 rna ? GO:0003735 ... P80376 12464183
    34895 1n36:L (3.65) BS01 rna ? GO:0000049 ... Q5SHN3 12464183
    34896 1n36:M (3.65) BS01 rna ? GO:0000049 ... P80377 12464183
    34897 1n36:N (3.65) BS01 rna ? GO:0003735 ... P0DOY6 12464183
    34898 1n36:O (3.65) BS01 rna ? GO:0003735 ... Q5SJ76 12464183
    34899 1n36:P (3.65) BS01 rna ? GO:0003735 ... Q5SJH3 12464183
    34900 1n36:Q (3.65) BS01 rna ? GO:0003735 ... P0DOY7 12464183
    34901 1n36:R (3.65) BS01 rna ? GO:0003735 ... Q5SLQ0 12464183
    34902 1n36:S (3.65) BS01 rna ? GO:0000028 ... Q5SHP2 12464183
    34903 1n36:T (3.65) BS01 rna ? GO:0003723 ... P80380 12464183
    34904 1n38:A (2.8) BS01 rna 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34905 1n38:A (2.8) BS02 rna 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34906 1n38:A (2.8) BS03 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34907 1n38:A (2.8) BS04 MN 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34908 1n38:A (2.8) BS05 U3H 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34909 1n38:A (2.8) BS06 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34910 1n38:A (2.8) BS07 CH1 2.7.7.48 GO:0000166 ... P0CK31 12464184
    34911 1n39:A (2.2) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34912 1n39:A (2.2) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34913 1n3a:A (2.2) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34914 1n3a:A (2.2) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34915 1n3c:A (2.7) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34916 1n3c:A (2.7) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 12578369
    34917 1n3e:A (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34918 1n3e:A (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34919 1n3e:A (2.5) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34920 1n3e:B (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34921 1n3e:B (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34922 1n3e:B (2.5) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34923 1n3e:G (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34924 1n3e:G (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34925 1n3e:G (2.5) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34926 1n3e:H (2.5) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34927 1n3e:H (2.5) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34928 1n3e:H (2.5) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34929 1n3f:A (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34930 1n3f:A (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34931 1n3f:A (2.0) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34932 1n3f:B (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34933 1n3f:B (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34934 1n3f:B (2.0) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34935 1n3f:G (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34936 1n3f:G (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34937 1n3f:G (2.0) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34938 1n3f:H (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34939 1n3f:H (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34940 1n3f:H (2.0) BS03 dna 3.1.-.- GO:0004519 ... P05725 12758074
    34941 1n3i:A (1.9) BS01 PO4 6.3.2.1 GO:0003824 ... P9WIL5 12755607
    34942 1n3i:A (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    34943 1n3i:B (1.9) BS01 PO4 6.3.2.1 GO:0003824 ... P9WIL5 12755607
    34944 1n3i:B (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    34945 1n3i:C (1.9) BS01 PO4 6.3.2.1 GO:0003824 ... P9WIL5 12755607
    34946 1n3i:C (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    34947 1n3n:A (3.0) BS01 peptide ? N/A P01899 12753896
    34948 1n3n:C (3.0) BS01 peptide ? N/A P01899 12753896
    34949 1n3n:E (3.0) BS01 peptide ? N/A P01899 12753896
    34950 1n3n:G (3.0) BS01 peptide ? N/A P01899 12753896
    34951 1n3o:A (2.0) BS01 GYP ? GO:0030246 ... Q8GSD2 12595543
    34952 1n3o:A (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    34953 1n3o:A (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    34954 1n3o:B (2.0) BS01 GYP ? GO:0030246 ... Q8GSD2 12595543
    34955 1n3o:B (2.0) BS02 MN ? GO:0030246 ... Q8GSD2 12595543
    34956 1n3o:B (2.0) BS03 CA ? GO:0030246 ... Q8GSD2 12595543
    34957 1n3p:A (2.1) BS01 GLC ? GO:0030246 ... Q8GSD2 12595543
    34958 1n3p:A (2.1) BS02 FRU ? GO:0030246 ... Q8GSD2 12595543
    34959 1n3p:A (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    34960 1n3p:A (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    34961 1n3p:B (2.1) BS01 GLC ? GO:0030246 ... Q8GSD2 12595543
    34962 1n3p:B (2.1) BS02 FRU ? GO:0030246 ... Q8GSD2 12595543
    34963 1n3p:B (2.1) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    34964 1n3p:B (2.1) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    34965 1n3q:A (2.2) BS01 FRU ? GO:0030246 ... Q8GSD2 12595543
    34966 1n3q:A (2.2) BS02 GLC ? GO:0030246 ... Q8GSD2 12595543
    34967 1n3q:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    34968 1n3q:A (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    34969 1n3q:B (2.2) BS01 BDF ? GO:0030246 ... Q8GSD2 12595543
    34970 1n3q:B (2.2) BS02 GLC ? GO:0030246 ... Q8GSD2 12595543
    34971 1n3q:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 12595543
    34972 1n3q:B (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 12595543
    34973 1n3r:A (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34974 1n3r:A (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34975 1n3r:B (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34976 1n3r:B (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34977 1n3r:C (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34978 1n3r:C (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34979 1n3r:D (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34980 1n3r:D (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34981 1n3r:E (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34982 1n3r:E (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34983 1n3r:F (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34984 1n3r:F (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34985 1n3r:G (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34986 1n3r:G (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34987 1n3r:H (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34988 1n3r:H (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34989 1n3r:I (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34990 1n3r:I (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34991 1n3r:J (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34992 1n3r:J (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34993 1n3r:K (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34994 1n3r:K (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34995 1n3r:L (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34996 1n3r:L (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34997 1n3r:M (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34998 1n3r:M (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    34999 1n3r:N (2.8) BS01 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918
    35000 1n3r:N (2.8) BS02 GTP 3.5.4.16 GO:0003934 ... P0A6T5 12559918

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).