SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    349801 5gmk:P (3.4) BS01 rna ? GO:0000350 ... P28004 27445308
    349802 5gmk:P (3.4) BS02 rna ? GO:0000350 ... P28004 27445308
    349803 5gmk:Q (3.4) BS01 rna ? GO:0000398 ... P38241 27445308
    349804 5gmk:Q (3.4) BS02 rna ? GO:0000398 ... P38241 27445308
    349805 5gmk:Q (3.4) BS03 ZN ? GO:0000398 ... P38241 27445308
    349806 5gmk:Q (3.4) BS04 ZN ? GO:0000398 ... P38241 27445308
    349807 5gmk:R (3.4) BS01 rna ? GO:0000387 ... Q12046 27445308
    349808 5gmk:R (3.4) BS02 rna ? GO:0000387 ... Q12046 27445308
    349809 5gmk:R (3.4) BS03 rna ? GO:0000387 ... Q12046 27445308
    349810 5gmk:R (3.4) BS04 ZN ? GO:0000387 ... Q12046 27445308
    349811 5gmk:S (3.4) BS01 rna ? GO:0000398 ... Q03772 27445308
    349812 5gmk:S (3.4) BS02 rna ? GO:0000398 ... Q03772 27445308
    349813 5gmk:S (3.4) BS03 rna ? GO:0000398 ... Q03772 27445308
    349814 5gmk:T (3.4) BS01 rna ? GO:0000282 ... P25337 27445308
    349815 5gmk:T (3.4) BS02 rna ? GO:0000282 ... P25337 27445308
    349816 5gmk:T (3.4) BS03 ZN ? GO:0000282 ... P25337 27445308
    349817 5gmk:T (3.4) BS04 ZN ? GO:0000282 ... P25337 27445308
    349818 5gmk:T (3.4) BS05 ZN ? GO:0000282 ... P25337 27445308
    349819 5gmk:Z (3.4) BS01 peptide ? GO:0000398 ... P53333 27445308
    349820 5gmk:a (3.4) BS01 rna ? GO:0000398 ... P40567 27445308
    349821 5gmk:c (3.4) BS01 rna ? GO:0000350 ... Q03654 27445308
    349822 5gmk:d (3.4) BS01 rna ? GO:0000398 ... Q12309 27445308
    349823 5gmk:e (3.4) BS01 rna ? GO:0000243 ... Q06217 27445308
    349824 5gmk:g (3.4) BS01 rna ? GO:0000243 ... Q06217 27445308
    349825 5gmk:h (3.4) BS01 rna ? GO:0000243 ... P54999 27445308
    349826 5gmk:i (3.4) BS01 rna ? GO:0000243 ... Q12330 27445308
    349827 5gmk:j (3.4) BS01 rna ? GO:0000243 ... P40204 27445308
    349828 5gmk:k (3.4) BS01 rna ? GO:0000243 ... P40018 27445308
    349829 5gmk:l (3.4) BS01 rna ? GO:0000243 ... P43321 27445308
    349830 5gmk:m (3.4) BS01 rna ? GO:0000243 ... Q02260 27445308
    349831 5gmk:n (3.4) BS01 rna ? GO:0000348 ... P40968 27445308
    349832 5gmk:n (3.4) BS02 rna ? GO:0000348 ... P40968 27445308
    349833 5gmk:s (3.4) BS01 rna ? GO:0000243 ... P40018 27445308
    349834 5gmk:u (3.4) BS01 rna ? GO:0000243 ... Q12330 27445308
    349835 5gmk:w (3.4) BS01 rna ? GO:0000243 ... P54999 27445308
    349836 5gmk:x (3.4) BS01 rna ? GO:0000243 ... P40204 27445308
    349837 5gmk:y (3.4) BS01 rna ? GO:0000243 ... P43321 27445308
    349838 5gmk:z (3.4) BS01 rna ? GO:0000243 ... Q02260 27445308
    349839 5gmm:A (2.003) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498
    349840 5gmm:A (2.003) BS02 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349841 5gmm:A (2.003) BS03 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349842 5gmm:A (2.003) BS04 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349843 5gmm:B (2.003) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498
    349844 5gmm:B (2.003) BS02 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349845 5gmm:B (2.003) BS03 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349846 5gmm:B (2.003) BS04 949 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 27475498 MOAD: Kd=29.1uM
    349847 5gmn:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27475498
    349848 5gmn:A (1.8) BS02 949 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27475498 MOAD: Kd=18.8uM
    349849 5gmp:A (2.797) BS01 F62 2.7.10.1 GO:0004672 ... P00533 28033579 BindingDB: IC50=386nM
    349850 5gmq:A (2.703) BS01 MAN ? N/A K9N5Q8 28472421
    349851 5gmu:A (1.8) BS01 7LH 2.5.1.54
    5.4.99.5
    GO:0046417 ... P39912 28743924
    349852 5gmu:B (1.8) BS01 7LH 2.5.1.54
    5.4.99.5
    GO:0046417 ... P39912 28743924
    349853 5gmv:A (2.25) BS01 peptide ? GO:0000045 ... Q9GZQ8 27757847
    349854 5gmv:B (2.25) BS01 peptide ? GO:0000045 ... Q9GZQ8 27757847
    349855 5gmy:A (3.5) BS01 peptide 2.4.99.21 GO:0004576 ... O29867 27997792
    349856 5gmy:A (3.5) BS02 MG 2.4.99.21 GO:0004576 ... O29867 27997792
    349857 5gmz:A (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349858 5gmz:A (1.7) BS02 6XU ? GO:0005198 ... P03147 27458651
    349859 5gmz:B (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349860 5gmz:B (1.7) BS02 6XU ? GO:0005198 ... P03147 27458651
    349861 5gmz:C (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349862 5gmz:C (1.7) BS02 6XU ? GO:0005198 ... P03147 27458651
    349863 5gmz:D (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349864 5gmz:E (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349865 5gmz:E (1.7) BS02 6XU ? GO:0005198 ... P03147 27458651
    349866 5gmz:F (1.7) BS01 6XU ? GO:0005198 ... P03147 27458651
    349867 5gn5:A (2.85) BS01 6XZ 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349868 5gn5:A (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349869 5gn5:B (2.85) BS01 6XZ 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349870 5gn5:B (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349871 5gn5:C (2.85) BS01 6XZ 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349872 5gn5:C (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349873 5gn5:D (2.85) BS01 6XZ 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349874 5gn5:D (2.85) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349875 5gn6:A (2.5) BS01 6Y0 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349876 5gn6:A (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349877 5gn6:B (2.5) BS01 6Y0 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349878 5gn6:B (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349879 5gn6:C (2.5) BS01 6Y0 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349880 5gn6:C (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349881 5gn6:D (2.5) BS01 6Y0 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349882 5gn6:D (2.5) BS02 GOL 2.7.1.30 GO:0004370 ... D3KVM3 31525300
    349883 5gn7:A (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349884 5gn7:A (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349885 5gn7:A (3.2) BS03 6XZ 1.-.-.- GO:0005739 ... Q26710 31525300
    349886 5gn7:B (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349887 5gn7:B (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349888 5gn7:C (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349889 5gn7:C (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349890 5gn7:D (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349891 5gn7:D (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349892 5gn8:A (2.805) BS01 CA 1.16.3.1 GO:0004322 ... P02794 27934076
    349893 5gn8:B (2.805) BS01 CA 1.16.3.1 GO:0006826 ... P02794 27934076
    349894 5gn9:A (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349895 5gn9:A (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349896 5gn9:A (3.2) BS03 6Y0 1.-.-.- GO:0005739 ... Q26710 31525300
    349897 5gn9:B (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349898 5gn9:B (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349899 5gn9:B (3.2) BS03 6Y0 1.-.-.- GO:0005739 ... Q26710 31525300
    349900 5gn9:C (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349901 5gn9:C (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349902 5gn9:C (3.2) BS03 6Y0 1.-.-.- GO:0005739 ... Q26710 31525300
    349903 5gn9:D (3.2) BS01 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349904 5gn9:D (3.2) BS02 FE 1.-.-.- GO:0005739 ... Q26710 31525300
    349905 5gn9:D (3.2) BS03 6Y0 1.-.-.- GO:0005739 ... Q26710 31525300
    349906 5gnd:A (2.5) BS01 peptide ? GO:0004252 ... P72780 27616292
    349907 5gne:A (2.5) BS01 ZN ? GO:0004177 ... Q5ZZH8 28776986
    349908 5gne:A (2.5) BS02 ZN ? GO:0004177 ... Q5ZZH8 28776986
    349909 5gne:B (2.5) BS01 ZN ? GO:0004177 ... Q5ZZH8 28776986
    349910 5gne:B (2.5) BS02 ZN ? GO:0004177 ... Q5ZZH8 28776986
    349911 5gnf:A (1.5) BS01 CA ? GO:0046872 ... L7P7R7 27585537
    349912 5gnf:B (1.5) BS01 CA ? GO:0046872 ... L7P7R7 27585537
    349913 5gnj:A (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349914 5gnj:A (2.7) BS02 dna ? GO:0003700 ... Q39204 28514654
    349915 5gnj:B (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349916 5gnj:B (2.7) BS02 dna ? GO:0003700 ... Q39204 28514654
    349917 5gnj:E (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349918 5gnj:F (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349919 5gnj:F (2.7) BS02 dna ? GO:0003700 ... Q39204 28514654
    349920 5gnj:G (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349921 5gnj:I (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349922 5gnj:M (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349923 5gnj:M (2.7) BS02 dna ? GO:0003700 ... Q39204 28514654
    349924 5gnj:N (2.7) BS01 dna ? GO:0003700 ... Q39204 28514654
    349925 5gnj:N (2.7) BS02 dna ? GO:0003700 ... Q39204 28514654
    349926 5gnk:A (1.796) BS01 80U 2.7.10.1 GO:0004672 ... P00533 28282122
    349927 5gnl:A (1.95) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    349928 5gnm:A (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    349929 5gnm:B (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    349930 5gnm:C (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    349931 5gnm:D (2.7) BS01 HEM 1.14.15.15 GO:0004497 ... C4B644 28471358
    349932 5gnr:A (2.65) BS01 GDP 3.6.5.- GO:0003924 ... Q8IWA4 N/A
    349933 5gns:A (2.702) BS01 GTP 3.6.5.- GO:0003924 ... Q8IWA4 N/A
    349934 5gnt:A (2.665) BS01 GDP 3.6.5.- GO:0003924 ... Q8IWA4 N/A
    349935 5gnv:A (2.596) BS01 peptide ? N/A P31016 28701415
    349936 5gnw:A (2.869) BS01 URA ? N/A Q89XR0 28369586
    349937 5gnw:B (2.869) BS01 URA ? N/A Q89XR0 28369586
    349938 5gnw:C (2.869) BS01 URA ? N/A Q89XR0 28369586
    349939 5gnw:D (2.869) BS01 URA ? N/A Q89XR0 28369586
    349940 5gnw:E (2.869) BS01 URA ? N/A Q89XR0 28369586
    349941 5gnw:F (2.869) BS01 URA ? N/A Q89XR0 28369586
    349942 5gnw:G (2.869) BS01 URA ? N/A Q89XR0 28369586
    349943 5gnw:H (2.869) BS01 URA ? N/A Q89XR0 28369586
    349944 5gnx:A (1.8) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349945 5gnx:B (1.8) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349946 5gny:A (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349947 5gny:B (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349948 5gny:C (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349949 5gny:D (2.105) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349950 5gnz:A (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349951 5gnz:B (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349952 5gnz:C (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349953 5gnz:D (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349954 5gnz:H (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349955 5gnz:I (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349956 5gnz:J (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349957 5gnz:K (2.2) BS01 BGC N/A GO:0004553 ... N/A 28189793
    349958 5go5:A (1.65) BS01 GLY ? N/A Q82FC3 28270507
    349959 5go9:A (4.4) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349960 5go9:B (4.4) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349961 5go9:C (4.4) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349962 5go9:D (4.4) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349963 5goa:A (4.2) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349964 5goa:B (4.2) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349965 5goa:C (4.2) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349966 5goa:D (4.2) BS01 ZN N/A GO:0005216 ... N/A 27708056
    349967 5goe:A (1.801) BS01 GDP 3.6.5.- GO:0003924 ... Q8IWA4 28114303 MOAD: Kd=45.7uM
    349968 5gof:A (1.604) BS01 GTP 3.6.5.- GO:0003924 ... Q8IWA4 28114303 MOAD: Kd=90.1uM
    349969 5gof:A (1.604) BS02 ZN 3.6.5.- GO:0003924 ... Q8IWA4 28114303
    349970 5gom:A (2.802) BS01 GDP 3.6.5.- GO:0003924 ... Q8IWA4 28114303
    349971 5gom:B (2.802) BS01 GDP 3.6.5.- GO:0003924 ... Q8IWA4 28114303
    349972 5gon:A (2.48) BS01 GTP 3.6.5.- GO:0000226 ... P81947 27805821
    349973 5gon:A (2.48) BS02 CA 3.6.5.- GO:0000226 ... P81947 27805821
    349974 5gon:A (2.48) BS03 6ZR 3.6.5.- GO:0000226 ... P81947 27805821
    349975 5gon:B (2.48) BS01 GDP ? GO:0000226 ... Q6B856 27805821
    349976 5gon:B (2.48) BS02 6ZR ? GO:0000226 ... Q6B856 27805821
    349977 5gon:C (2.48) BS01 GTP 3.6.5.- GO:0000226 ... P81947 27805821
    349978 5gon:D (2.48) BS01 GDP ? GO:0000226 ... Q6B856 27805821
    349979 5gon:D (2.48) BS02 MG ? GO:0000226 ... Q6B856 27805821
    349980 5goo:A (2.11) BS01 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349981 5goo:B (2.11) BS01 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349982 5goo:C (2.11) BS01 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349983 5gop:A (2.35) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349984 5gop:A (2.35) BS02 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349985 5gop:B (2.35) BS01 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349986 5gop:C (2.35) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349987 5gop:C (2.35) BS02 FRU 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349988 5goq:A (2.75) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349989 5goq:B (2.75) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349990 5goq:C (2.75) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YWS9 27777307
    349991 5gov:A (2.33) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349992 5gov:A (2.33) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349993 5gov:A (2.33) BS03 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349994 5gov:B (2.33) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349995 5gov:B (2.33) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349996 5gov:B (2.33) BS03 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27958270
    349997 5gow:B (-1.00) BS01 peptide ? GO:0000439 ... P32780 27825926
    349998 5gox:A (2.405) BS01 ZN 3.6.-.- N/A Q92878 28134932
    349999 5gox:B (2.405) BS01 ZN 3.6.-.- N/A Q92878 28134932
    350000 5goy:A (2.278) BS01 ZN 6.1.1.10 GO:0000166 ... P56192 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).