SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    350401 5gt0:C (2.82) BS02 dna ? GO:0000781 ... Q96QV6 27992841
    350402 5gt0:C (2.82) BS03 MN ? GO:0000781 ... Q96QV6 27992841
    350403 5gt0:D (2.82) BS01 dna ? GO:0000786 ... P62807 27992841
    350404 5gt0:D (2.82) BS02 dna ? GO:0000786 ... P62807 27992841
    350405 5gt0:D (2.82) BS03 MN ? GO:0000786 ... P62807 27992841
    350406 5gt0:E (2.82) BS01 dna ? GO:0000786 ... P68431 27992841
    350407 5gt0:E (2.82) BS02 dna ? GO:0000786 ... P68431 27992841
    350408 5gt0:F (2.82) BS01 dna ? GO:0000781 ... P62805 27992841
    350409 5gt0:F (2.82) BS02 dna ? GO:0000781 ... P62805 27992841
    350410 5gt0:G (2.82) BS01 dna ? GO:0000781 ... Q96QV6 27992841
    350411 5gt0:G (2.82) BS02 dna ? GO:0000781 ... Q96QV6 27992841
    350412 5gt0:H (2.82) BS01 dna ? GO:0000786 ... P62807 27992841
    350413 5gt0:H (2.82) BS02 dna ? GO:0000786 ... P62807 27992841
    350414 5gt1:A (1.85) BS01 ZN ? N/A A0A0F7PV22 28281568
    350415 5gt2:A (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    350416 5gt2:B (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    350417 5gt2:C (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    350418 5gt2:D (2.093) BS01 HEM 1.11.1.- GO:0004601 ... P76536 28109884
    350419 5gt3:A (2.91) BS01 dna ? GO:0000786 ... P68431 27992841
    350420 5gt3:A (2.91) BS02 dna ? GO:0000786 ... P68431 27992841
    350421 5gt3:B (2.91) BS01 dna ? GO:0000781 ... P62805 27992841
    350422 5gt3:B (2.91) BS02 dna ? GO:0000781 ... P62805 27992841
    350423 5gt3:C (2.91) BS01 dna ? GO:0000786 ... P20671 27992841
    350424 5gt3:C (2.91) BS02 dna ? GO:0000786 ... P20671 27992841
    350425 5gt3:D (2.91) BS01 dna ? GO:0000781 ... Q96A08 27992841
    350426 5gt3:D (2.91) BS02 dna ? GO:0000781 ... Q96A08 27992841
    350427 5gt3:E (2.91) BS01 dna ? GO:0000786 ... P68431 27992841
    350428 5gt3:E (2.91) BS02 dna ? GO:0000786 ... P68431 27992841
    350429 5gt3:F (2.91) BS01 dna ? GO:0000781 ... P62805 27992841
    350430 5gt3:F (2.91) BS02 dna ? GO:0000781 ... P62805 27992841
    350431 5gt3:G (2.91) BS01 dna ? GO:0000786 ... P20671 27992841
    350432 5gt3:G (2.91) BS02 dna ? GO:0000786 ... P20671 27992841
    350433 5gt3:G (2.91) BS03 MN ? GO:0000786 ... P20671 27992841
    350434 5gt3:H (2.91) BS01 dna ? GO:0000781 ... Q96A08 27992841
    350435 5gt3:H (2.91) BS02 dna ? GO:0000781 ... Q96A08 27992841
    350436 5gt4:A (1.83) BS01 2KB ? GO:0003677 ... P11473 N/A
    350437 5gt7:A (2.048) BS01 ARG ? GO:0005515 ... Q8WTX7 30503338
    350438 5gt7:B (2.048) BS01 ARG ? GO:0005515 ... Q8WTX7 30503338
    350439 5gt7:C (2.048) BS01 ARG ? GO:0005515 ... Q8WTX7 30503338
    350440 5gt7:D (2.048) BS01 ARG ? GO:0005515 ... Q8WTX7 30503338
    350441 5gt9:A (1.7) BS01 NAP 1.1.1.201 GO:0000166 ... A4ECA9 28471355 MOAD: Ka=44700M^-1
    350442 5gt9:B (1.7) BS01 NAP 1.1.1.201 GO:0000166 ... A4ECA9 28471355 MOAD: Ka=44700M^-1
    350443 5gt9:B (1.7) BS02 NAP 1.1.1.201 GO:0000166 ... A4ECA9 28471355 MOAD: Ka=44700M^-1
    350444 5gta:A (2.998) BS01 PAV ? GO:0043190 ... Q8Z2X8 N/A
    350445 5gtb:A (2.871) BS01 peptide ? N/A Q9FIG9 28248291
    350446 5gtc:A (2.7) BS01 dna ? GO:0000786 ... P68431 28534629
    350447 5gtc:A (2.7) BS02 dna ? GO:0000786 ... P68431 28534629
    350448 5gtc:B (2.7) BS01 dna ? GO:0000781 ... P62805 28534629
    350449 5gtc:B (2.7) BS02 dna ? GO:0000781 ... P62805 28534629
    350450 5gtc:C (2.7) BS01 dna ? GO:0000786 ... P04908 28534629
    350451 5gtc:C (2.7) BS02 dna ? GO:0000786 ... P04908 28534629
    350452 5gtc:D (2.7) BS01 dna ? GO:0000786 ... P06899 28534629
    350453 5gtc:D (2.7) BS02 dna ? GO:0000786 ... P06899 28534629
    350454 5gtc:E (2.7) BS01 dna ? GO:0000786 ... P68431 28534629
    350455 5gtc:E (2.7) BS02 dna ? GO:0000786 ... P68431 28534629
    350456 5gtc:F (2.7) BS01 dna ? GO:0000781 ... P62805 28534629
    350457 5gtc:F (2.7) BS02 dna ? GO:0000781 ... P62805 28534629
    350458 5gtc:G (2.7) BS01 dna ? GO:0000786 ... P04908 28534629
    350459 5gtc:G (2.7) BS02 dna ? GO:0000786 ... P04908 28534629
    350460 5gtc:G (2.7) BS03 peptide ? GO:0000786 ... P04908 28534629
    350461 5gtc:H (2.7) BS01 dna ? GO:0000786 ... P06899 28534629
    350462 5gtc:H (2.7) BS02 dna ? GO:0000786 ... P06899 28534629
    350463 5gtc:H (2.7) BS03 peptide ? GO:0000786 ... P06899 28534629
    350464 5gtd:A (2.69) BS01 A 6.2.1.26 GO:0005524 ... P23971 27933791
    350465 5gtd:A (2.69) BS02 OSB 6.2.1.26 GO:0005524 ... P23971 27933791
    350466 5gtd:A (2.69) BS03 MG 6.2.1.26 GO:0005524 ... P23971 27933791
    350467 5gtd:B (2.69) BS01 A 6.2.1.26 GO:0005524 ... P23971 27933791
    350468 5gtd:B (2.69) BS02 OSB 6.2.1.26 GO:0005524 ... P23971 27933791
    350469 5gte:A (2.0) BS01 GLC 5.3.99.12 GO:0005773 ... P59082 N/A
    350470 5gte:B (2.0) BS01 GLC 5.3.99.12 GO:0005773 ... P59082 N/A
    350471 5gtg:A (1.7) BS01 GLC 5.3.99.12 GO:0005773 ... P59082 N/A
    350472 5gth:A (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    350473 5gth:A (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350474 5gth:A (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350475 5gth:A (2.5) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350476 5gth:A (2.5) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    350477 5gth:A (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350478 5gth:A (2.5) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    350479 5gth:A (2.5) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    350480 5gth:A (2.5) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    350481 5gth:B (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    350482 5gth:B (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    350483 5gth:B (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    350484 5gth:B (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    350485 5gth:B (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    350486 5gth:B (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    350487 5gth:B (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    350488 5gth:B (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    350489 5gth:B (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    350490 5gth:B (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    350491 5gth:B (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    350492 5gth:B (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    350493 5gth:B (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    350494 5gth:B (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    350495 5gth:B (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    350496 5gth:B (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    350497 5gth:C (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    350498 5gth:C (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    350499 5gth:C (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    350500 5gth:C (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    350501 5gth:C (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    350502 5gth:C (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    350503 5gth:C (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    350504 5gth:C (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    350505 5gth:C (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    350506 5gth:C (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    350507 5gth:C (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    350508 5gth:C (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    350509 5gth:C (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    350510 5gth:C (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    350511 5gth:C (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    350512 5gth:D (2.5) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350513 5gth:D (2.5) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350514 5gth:D (2.5) BS03 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350515 5gth:D (2.5) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350516 5gth:D (2.5) BS05 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350517 5gth:D (2.5) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350518 5gth:D (2.5) BS07 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350519 5gth:D (2.5) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350520 5gth:D (2.5) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350521 5gth:E (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    350522 5gth:F (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    350523 5gth:H (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    350524 5gth:H (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    350525 5gth:H (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    350526 5gth:H (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    350527 5gth:I (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    350528 5gth:J (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    350529 5gth:K (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    350530 5gth:K (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    350531 5gth:K (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    350532 5gth:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    350533 5gth:V (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    350534 5gth:Z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    350535 5gth:Z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    350536 5gth:a (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    350537 5gth:a (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350538 5gth:a (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350539 5gth:a (2.5) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    350540 5gth:a (2.5) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    350541 5gth:a (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350542 5gth:a (2.5) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    350543 5gth:a (2.5) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    350544 5gth:a (2.5) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    350545 5gth:b (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    350546 5gth:b (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    350547 5gth:b (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    350548 5gth:b (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    350549 5gth:b (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    350550 5gth:b (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    350551 5gth:b (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    350552 5gth:b (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    350553 5gth:b (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    350554 5gth:b (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    350555 5gth:b (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    350556 5gth:b (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    350557 5gth:b (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    350558 5gth:b (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    350559 5gth:b (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    350560 5gth:b (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    350561 5gth:c (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    350562 5gth:c (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    350563 5gth:c (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    350564 5gth:c (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    350565 5gth:c (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    350566 5gth:c (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    350567 5gth:c (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    350568 5gth:c (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    350569 5gth:c (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    350570 5gth:c (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    350571 5gth:c (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    350572 5gth:c (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    350573 5gth:c (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    350574 5gth:c (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    350575 5gth:c (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    350576 5gth:c (2.5) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    350577 5gth:d (2.5) BS01 FE2 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350578 5gth:d (2.5) BS02 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350579 5gth:d (2.5) BS03 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350580 5gth:d (2.5) BS04 PHO 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350581 5gth:d (2.5) BS05 BCT 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350582 5gth:d (2.5) BS06 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350583 5gth:d (2.5) BS07 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350584 5gth:d (2.5) BS08 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350585 5gth:d (2.5) BS09 CLA 1.10.3.9 GO:0005737 ... D0VWR8 28219079
    350586 5gth:e (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    350587 5gth:f (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    350588 5gth:h (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    350589 5gth:h (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    350590 5gth:h (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    350591 5gth:h (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    350592 5gth:i (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    350593 5gth:j (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    350594 5gth:k (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    350595 5gth:k (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    350596 5gth:k (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    350597 5gth:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    350598 5gth:v (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    350599 5gth:z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    350600 5gth:z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).