SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    351201 5gy7:B (1.43) BS01 UDP 5.1.3.2 GO:0003978 ... P09147 N/A
    351202 5gy7:B (1.43) BS02 NAD 5.1.3.2 GO:0003978 ... P09147 N/A
    351203 5gyn:A (1.995) BS01 MG 3.1.3.16
    3.1.3.74
    GO:0000287 ... Q96GD0 N/A
    351204 5gyr:A (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351205 5gyr:A (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    351206 5gyr:B (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351207 5gyr:E (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351208 5gyr:E (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    351209 5gyr:F (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351210 5gyr:I (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351211 5gyr:J (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351212 5gyr:J (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    351213 5gyr:M (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351214 5gyr:N (1.6) BS01 HEC ? GO:0005506 ... P00154 27883268
    351215 5gyr:N (1.6) BS02 HEC ? GO:0005506 ... P00154 27883268
    351216 5gyz:A (2.4) BS01 7BV 1.13.12.7 N/A P08659 N/A
    351217 5gyz:A (2.4) BS02 AMP 1.13.12.7 N/A P08659 N/A
    351218 5gz2:A (2.0) BS01 7BV 1.13.12.7 N/A P08659 N/A
    351219 5gz3:A (1.59) BS01 NAP 1.4.1.16 GO:0008839 ... G1UII1 28363957
    351220 5gz3:B (1.59) BS01 NAP 1.4.1.16 GO:0008839 ... G1UII1 28363957
    351221 5gz4:A (2.55) BS01 ZN 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351222 5gz4:A (2.55) BS02 ZN 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351223 5gz4:A (2.55) BS03 CA 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351224 5gz5:A (2.093) BS01 ZN 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351225 5gz5:A (2.093) BS02 ZN 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351226 5gz5:A (2.093) BS03 CA 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351227 5gz5:A (2.093) BS04 AMP 3.6.1.- GO:0003676 ... A0A2D0TC04 N/A
    351228 5gz6:A (1.74) BS01 NDP 1.4.1.16 GO:0008839 ... G1UII1 28363957
    351229 5gz6:A (1.74) BS02 7C3 1.4.1.16 GO:0008839 ... G1UII1 28363957
    351230 5gz9:A (2.4) BS01 ANP 2.7.1.183 GO:0004672 ... Q3TUA9 28251761
    351231 5gz9:A (2.4) BS02 MG 2.7.1.183 GO:0004672 ... Q3TUA9 28251761
    351232 5gz9:A (2.4) BS03 MG 2.7.1.183 GO:0004672 ... Q3TUA9 28251761
    351233 5gz9:A (2.4) BS04 MAN 2.7.1.183 GO:0004672 ... Q3TUA9 28251761
    351234 5gza:A (2.0) BS01 MAN 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351235 5gza:A (2.0) BS02 ADP 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351236 5gza:A (2.0) BS03 MG 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351237 5gza:A (2.0) BS04 MG 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351238 5gza:A (2.0) BS05 AF3 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351239 5gza:A (2.0) BS06 ZZ1 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    351240 5gzb:A (2.704) BS01 dna ? GO:0003700 ... Q15561 28368398
    351241 5gzb:A (2.704) BS02 dna ? GO:0003700 ... Q15561 28368398
    351242 5gzc:A (1.08) BS01 GOL ? GO:0030246 ... O00214 27973456
    351243 5gzd:A (1.19) BS01 BGC ? GO:0030246 ... O00214 27973456
    351244 5gzd:A (1.19) BS02 GAL ? GO:0030246 ... O00214 27973456
    351245 5gze:A (1.32) BS01 BGC ? GO:0030246 ... O00214 27973456
    351246 5gze:A (1.32) BS02 GAL ? GO:0030246 ... O00214 27973456
    351247 5gzf:A (2.002) BS01 BGC ? GO:0030246 ... O00214 27973456
    351248 5gzf:A (2.002) BS02 GAL ? GO:0030246 ... O00214 27973456
    351249 5gzg:A (1.997) BS01 BGC ? GO:0030246 ... O00214 27973456
    351250 5gzg:A (1.997) BS02 GAL ? GO:0030246 ... O00214 27973456
    351251 5gzh:A (1.8) BS01 GLC N/A N/A N/A 28270506
    351252 5gzh:A (1.8) BS02 GLC N/A N/A N/A 28270506
    351253 5gzh:B (1.8) BS01 GLC N/A N/A N/A 28270506
    351254 5gzh:B (1.8) BS02 GLC N/A N/A N/A 28270506
    351255 5gzi:A (2.17) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351256 5gzi:A (2.17) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351257 5gzi:B (2.17) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351258 5gzi:B (2.17) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351259 5gzj:A (1.87) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351260 5gzj:B (1.87) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351261 5gzk:A (1.7) BS01 BGC N/A N/A N/A 28270506
    351262 5gzk:A (1.7) BS02 BGC N/A N/A N/A 28270506
    351263 5gzk:A (1.7) BS03 BGC N/A N/A N/A 28270506
    351264 5gzk:B (1.7) BS01 BGC N/A N/A N/A 28270506
    351265 5gzk:B (1.7) BS02 BGC N/A N/A N/A 28270506
    351266 5gzk:B (1.7) BS03 BGC N/A N/A N/A 28270506
    351267 5gzl:A (2.0) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351268 5gzl:A (2.0) BS02 LYS 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351269 5gzl:B (2.0) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351270 5gzl:B (2.0) BS02 LYS 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351271 5gzm:A (1.8) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351272 5gzm:A (1.8) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351273 5gzm:B (1.8) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351274 5gzm:B (1.8) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 N/A
    351275 5gzp:A (2.03) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 N/A
    351276 5gzp:B (2.03) BS01 PGA 5.3.1.1 GO:0004807 ... Q07412 N/A
    351277 5gzs:A (2.601) BS01 ARG ? N/A Q9KT38 28500346
    351278 5gzw:A (1.489) BS01 AMP 3.5.2.6 GO:0008800 ... A0A076YIY5 27999057
    351279 5gzw:B (1.489) BS01 AMP 3.5.2.6 GO:0008800 ... A0A076YIY5 27999057
    351280 5gzx:A (2.35) BS01 RCI 3.8.1.9 GO:0016787 ... Q52086 N/A
    351281 5gzx:B (2.35) BS01 RCI 3.8.1.9 GO:0016787 ... Q52086 N/A
    351282 5gzx:C (2.35) BS01 RCI 3.8.1.9 GO:0016787 ... Q52086 N/A
    351283 5gzx:D (2.35) BS01 RCI 3.8.1.9 GO:0016787 ... Q52086 N/A
    351284 5gzz:A (2.386) BS01 JAA 6.3.2.52 GO:0005515 ... Q9SKE2 28223489
    351285 5gzz:B (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351286 5gzz:C (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351287 5gzz:D (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351288 5gzz:E (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351289 5gzz:F (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351290 5gzz:G (2.386) BS01 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351291 5gzz:G (2.386) BS02 GSH 2.5.1.18 GO:0004364 ... P08515 28223489
    351292 5h02:A (1.776) BS01 SAH ? GO:0005829 ... F6KV61 27934872
    351293 5h04:A (1.825) BS01 NAI ? GO:0000166 ... X5I2D7 27751850
    351294 5h05:A (2.55) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351295 5h05:A (2.55) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351296 5h05:A (2.55) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351297 5h05:A (2.55) BS04 CA N/A GO:0005975 ... N/A 28303907
    351298 5h05:A (2.55) BS05 CA N/A GO:0005975 ... N/A 28303907
    351299 5h05:B (2.55) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351300 5h05:B (2.55) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351301 5h05:B (2.55) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351302 5h05:B (2.55) BS04 CA N/A GO:0005975 ... N/A 28303907
    351303 5h05:B (2.55) BS05 CA N/A GO:0005975 ... N/A 28303907
    351304 5h05:C (2.55) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351305 5h05:C (2.55) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351306 5h05:C (2.55) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351307 5h05:C (2.55) BS04 CA N/A GO:0005975 ... N/A 28303907
    351308 5h05:C (2.55) BS05 CA N/A GO:0005975 ... N/A 28303907
    351309 5h05:D (2.55) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351310 5h05:D (2.55) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351311 5h05:D (2.55) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351312 5h05:D (2.55) BS04 CA N/A GO:0005975 ... N/A 28303907
    351313 5h05:D (2.55) BS05 CA N/A GO:0005975 ... N/A 28303907
    351314 5h06:A (1.95) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351315 5h06:A (1.95) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351316 5h06:A (1.95) BS03 CA N/A GO:0005975 ... N/A 28303907
    351317 5h06:A (1.95) BS04 CA N/A GO:0005975 ... N/A 28303907
    351318 5h06:B (1.95) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351319 5h06:B (1.95) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351320 5h06:B (1.95) BS03 CA N/A GO:0005975 ... N/A 28303907
    351321 5h06:B (1.95) BS04 CA N/A GO:0005975 ... N/A 28303907
    351322 5h06:C (1.95) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351323 5h06:C (1.95) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351324 5h06:C (1.95) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351325 5h06:C (1.95) BS04 CA N/A GO:0005975 ... N/A 28303907
    351326 5h06:C (1.95) BS05 CA N/A GO:0005975 ... N/A 28303907
    351327 5h06:D (1.95) BS01 GLC N/A GO:0005975 ... N/A 28303907
    351328 5h06:D (1.95) BS02 GLC N/A GO:0005975 ... N/A 28303907
    351329 5h06:D (1.95) BS03 GLC N/A GO:0005975 ... N/A 28303907
    351330 5h06:D (1.95) BS04 CA N/A GO:0005975 ... N/A 28303907
    351331 5h06:D (1.95) BS05 CA N/A GO:0005975 ... N/A 28303907
    351332 5h08:A (2.53) BS01 7WL 3.1.3.48 GO:0004725 ... P23471 28717188
    351333 5h09:A (1.945) BS01 OOO 2.7.10.2 GO:0004672 ... P08631 28662963 MOAD: ic50=1323nM
    351334 5h0b:A (1.651) BS01 OOQ 2.7.10.2 GO:0004672 ... P08631 28662963 MOAD: ic50=11nM
    351335 5h0e:A (2.1) BS01 OOS 2.7.10.2 GO:0004672 ... P08631 28662963 MOAD: ic50=210nM
    BindingDB: IC50=209nM
    351336 5h0g:A (1.8) BS01 OOU 2.7.10.2 GO:0004672 ... P08631 28662963 MOAD: ic50=111nM
    BindingDB: IC50=111nM
    351337 5h0h:A (1.72) BS01 OOV 2.7.10.2 GO:0004672 ... P08631 28662963 MOAD: ic50=686nM
    BindingDB: IC50=692nM
    351338 5h0m:A (1.52) BS01 ZN ? GO:0003676 ... A0A1U7Q1S7 28211904
    351339 5h0o:A (1.53) BS01 MN ? GO:0003676 ... A0A1U7Q1S7 28211904
    351340 5h0p:A (1.862) BS01 CA ? GO:0005509 ... Q96C19 28011271
    351341 5h0p:A (1.862) BS02 CA ? GO:0005509 ... Q96C19 28011271
    351342 5h0r:F (3.9) BS01 rna ? GO:0001172 ... A0A0S1LIW6 27914893
    351343 5h0r:F (3.9) BS02 rna ? GO:0001172 ... A0A0S1LIW6 27914893
    351344 5h0u:A (2.239) BS01 peptide 3.4.24.80 GO:0004222 ... P50281 28951896
    351345 5h0u:A (2.239) BS02 CA 3.4.24.80 GO:0004222 ... P50281 28951896
    351346 5h0u:A (2.239) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 28951896
    351347 5h0u:A (2.239) BS04 ZN 3.4.24.80 GO:0004222 ... P50281 28951896
    351348 5h0u:A (2.239) BS05 CA 3.4.24.80 GO:0004222 ... P50281 28951896
    351349 5h10:A (3.205) BS01 peptide ? GO:0005164 ... Q13077 N/A
    351350 5h10:B (3.205) BS01 peptide ? GO:0005164 ... Q13077 N/A
    351351 5h10:C (3.205) BS01 peptide ? GO:0005164 ... Q13077 N/A
    351352 5h13:A (1.9) BS01 LQA ? N/A O75530 28072869 MOAD: ic50=11.58uM
    351353 5h14:A (1.9) BS01 peptide ? N/A O75530 28072869
    351354 5h14:A (1.9) BS02 LQB ? N/A O75530 28072869 MOAD: ic50=8.76uM
    351355 5h14:B (1.9) BS01 peptide ? N/A O75530 28072869
    351356 5h14:B (1.9) BS02 LQB ? N/A O75530 28072869 MOAD: ic50=8.76uM
    351357 5h15:A (2.27) BS01 peptide ? N/A O75530 28072869
    351358 5h15:A (2.27) BS02 LQD ? N/A O75530 28072869 MOAD: ic50=1.57uM
    BindingDB: Ki=600nM, Kd=38000nM
    351359 5h15:B (2.27) BS01 peptide ? N/A O75530 28072869
    351360 5h15:B (2.27) BS02 LQD ? N/A O75530 28072869 MOAD: ic50=1.57uM
    BindingDB: Ki=600nM, Kd=38000nM
    351361 5h17:A (2.3) BS01 peptide ? N/A O75530 28072869
    351362 5h17:A (2.3) BS02 LQE ? N/A O75530 28072869 MOAD: ic50=0.89uM
    BindingDB: IC50=2500nM
    351363 5h18:A (1.4) BS01 UPG ? GO:0000166 ... A0A2D0TCJ6 28939828
    351364 5h18:A (1.4) BS02 CA ? GO:0000166 ... A0A2D0TCJ6 28939828
    351365 5h19:A (1.9) BS01 peptide ? N/A O75530 28072869
    351366 5h19:A (1.9) BS02 LQF ? N/A O75530 28072869 MOAD: ic50=0.32uM
    BindingDB: IC50=620nM
    351367 5h1b:A (4.4) BS01 dna ? GO:0000150 ... Q06609 27941862
    351368 5h1b:A (4.4) BS02 ANP ? GO:0000150 ... Q06609 27941862
    351369 5h1b:A (4.4) BS03 MG ? GO:0000150 ... Q06609 27941862
    351370 5h1b:B (4.4) BS01 dna ? GO:0000150 ... Q06609 27941862
    351371 5h1b:B (4.4) BS02 ANP ? GO:0000150 ... Q06609 27941862
    351372 5h1b:B (4.4) BS03 ANP ? GO:0000150 ... Q06609 27941862
    351373 5h1b:B (4.4) BS04 MG ? GO:0000150 ... Q06609 27941862
    351374 5h1b:C (4.4) BS01 dna ? GO:0000150 ... Q06609 27941862
    351375 5h1b:C (4.4) BS02 ANP ? GO:0000150 ... Q06609 27941862
    351376 5h1b:C (4.4) BS03 ANP ? GO:0000150 ... Q06609 27941862
    351377 5h1b:C (4.4) BS04 MG ? GO:0000150 ... Q06609 27941862
    351378 5h1c:A (4.5) BS01 dna ? GO:0000150 ... Q06609 27941862
    351379 5h1c:A (4.5) BS02 MG ? GO:0000150 ... Q06609 27941862
    351380 5h1c:A (4.5) BS03 ANP ? GO:0000150 ... Q06609 27941862
    351381 5h1c:B (4.5) BS01 dna ? GO:0000150 ... Q06609 27941862
    351382 5h1c:B (4.5) BS02 dna ? GO:0000150 ... Q06609 27941862
    351383 5h1c:B (4.5) BS03 ANP ? GO:0000150 ... Q06609 27941862
    351384 5h1c:B (4.5) BS04 MG ? GO:0000150 ... Q06609 27941862
    351385 5h1c:B (4.5) BS05 ANP ? GO:0000150 ... Q06609 27941862
    351386 5h1c:C (4.5) BS01 dna ? GO:0000150 ... Q06609 27941862
    351387 5h1c:C (4.5) BS02 dna ? GO:0000150 ... Q06609 27941862
    351388 5h1c:C (4.5) BS03 ANP ? GO:0000150 ... Q06609 27941862
    351389 5h1c:C (4.5) BS04 ANP ? GO:0000150 ... Q06609 27941862
    351390 5h1c:C (4.5) BS05 MG ? GO:0000150 ... Q06609 27941862
    351391 5h1e:A (2.6) BS01 peptide ? GO:0003677 ... P13053 27890450
    351392 5h1e:A (2.6) BS02 VDX ? GO:0003677 ... P13053 27890450 BindingDB: Ki=0.1nM, EC50=0.2nM
    351393 5h1k:A (1.9) BS01 rna ? N/A Q8TEQ6 27881601
    351394 5h1k:B (1.9) BS01 rna ? N/A Q8TEQ6 27881601
    351395 5h1l:A (2.1) BS01 rna ? N/A Q8TEQ6 27881601
    351396 5h1m:A (2.492) BS01 M7G ? N/A Q8TEQ6 27881601
    351397 5h1s:E (3.5) BS01 rna ? GO:0003723 ... P06509 27762343
    351398 5h1s:F (3.5) BS01 rna ? GO:0003735 ... P82191 27762343
    351399 5h1s:F (3.5) BS02 rna ? GO:0003735 ... P82191 27762343
    351400 5h1s:G (3.5) BS01 rna ? GO:0003735 ... O49937 27762343

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).