SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    351801 5h4p:S (3.07) BS02 rna ? GO:0002181 ... P0CX23 28112732
    351802 5h4p:T (3.07) BS01 rna ? GO:0002181 ... Q02753 28112732
    351803 5h4p:T (3.07) BS02 rna ? GO:0002181 ... Q02753 28112732
    351804 5h4p:U (3.07) BS01 rna ? GO:0002181 ... P05749 28112732
    351805 5h4p:V (3.07) BS01 rna ? GO:0002181 ... P0CX41 28112732
    351806 5h4p:W (3.07) BS01 rna ? GO:0002181 ... P04449 28112732
    351807 5h4p:X (3.07) BS01 rna ? GO:0000027 ... P04456 28112732
    351808 5h4p:X (3.07) BS02 rna ? GO:0000027 ... P04456 28112732
    351809 5h4p:Y (3.07) BS01 rna ? GO:0002181 ... P05743 28112732
    351810 5h4p:Y (3.07) BS02 rna ? GO:0002181 ... P05743 28112732
    351811 5h4p:Z (3.07) BS01 rna ? GO:0002181 ... P0C2H6 28112732
    351812 5h4p:a (3.07) BS01 rna ? GO:0002181 ... P02406 28112732
    351813 5h4p:b (3.07) BS01 rna ? GO:0002181 ... P05747 28112732
    351814 5h4p:c (3.07) BS01 rna ? GO:0002181 ... P14120 28112732
    351815 5h4p:d (3.07) BS01 rna ? GO:0002181 ... P0C2H8 28112732
    351816 5h4p:e (3.07) BS01 rna ? GO:0002181 ... P38061 28112732
    351817 5h4p:f (3.07) BS01 rna ? GO:0000027 ... P05744 28112732
    351818 5h4p:g (3.07) BS01 rna ? GO:0002181 ... P87262 28112732
    351819 5h4p:h (3.07) BS01 rna ? GO:0000463 ... P0CX84 28112732
    351820 5h4p:h (3.07) BS02 rna ? GO:0000463 ... P0CX84 28112732
    351821 5h4p:i (3.07) BS01 rna ? GO:0002181 ... P05745 28112732
    351822 5h4p:j (3.07) BS01 rna ? GO:0000448 ... P49166 28112732
    351823 5h4p:j (3.07) BS02 rna ? GO:0000448 ... P49166 28112732
    351824 5h4p:k (3.07) BS01 rna ? GO:0002181 ... P49167 28112732
    351825 5h4p:l (3.07) BS01 rna ? GO:0002181 ... P04650 28112732
    351826 5h4p:l (3.07) BS02 rna ? GO:0002181 ... P04650 28112732
    351827 5h4p:o (3.07) BS01 rna ? GO:0002181 ... P0CX27 28112732
    351828 5h4p:p (3.07) BS01 rna ? GO:0002181 ... P0CX25 28112732
    351829 5h4p:w (3.07) BS01 rna ? GO:0043023 ... P38861 28112732
    351830 5h4p:y (3.07) BS01 rna ? GO:0000054 ... Q12522 28112732
    351831 5h4p:z (3.07) BS01 rna ? N/A Q06709 28112732
    351832 5h4p:z (3.07) BS02 rna ? N/A Q06709 28112732
    351833 5h4r:A (1.7031) BS01 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    351834 5h4r:A (1.7031) BS02 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    351835 5h4r:A (1.7031) BS03 BGC 3.2.1.4 GO:0000272 ... R9RX81 28838949
    351836 5h4s:A (1.8) BS01 RAM ? GO:0030246 ... A0A090BWT0 28470711
    351837 5h4s:A (1.8) BS02 RAM ? GO:0030246 ... A0A090BWT0 28470711
    351838 5h4s:A (1.8) BS03 RAM ? GO:0030246 ... A0A090BWT0 28470711
    351839 5h4y:A (1.9) BS01 CA ? GO:0016020 ... O00445 27793683
    351840 5h4y:A (1.9) BS02 CA ? GO:0016020 ... O00445 27793683
    351841 5h4y:A (1.9) BS03 CA ? GO:0016020 ... O00445 27793683
    351842 5h4z:A (3.01) BS01 CA ? GO:0016020 ... O00445 27793683
    351843 5h4z:A (3.01) BS02 CA ? GO:0016020 ... O00445 27793683
    351844 5h4z:A (3.01) BS03 CA ? GO:0016020 ... O00445 27793683
    351845 5h4z:B (3.01) BS01 CA ? GO:0016020 ... O00445 27793683
    351846 5h4z:B (3.01) BS02 CA ? GO:0016020 ... O00445 27793683
    351847 5h4z:B (3.01) BS03 CA ? GO:0016020 ... O00445 27793683
    351848 5h52:A (3.0) BS01 4TI ? GO:0005515 ... P02787 29623422
    351849 5h52:A (3.0) BS02 4TI ? GO:0005515 ... P02787 29623422
    351850 5h53:D (5.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 28067235
    351851 5h53:E (5.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 28067235
    351852 5h56:A (1.7) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    351853 5h56:A (1.7) BS02 TYD 2.7.4.9 GO:0004798 ... O67099 28627020
    351854 5h56:A (1.7) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    351855 5h56:B (1.7) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    351856 5h56:B (1.7) BS02 TYD 2.7.4.9 GO:0004798 ... O67099 28627020
    351857 5h56:B (1.7) BS03 MG 2.7.4.9 GO:0004798 ... O67099 28627020
    351858 5h57:A (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351859 5h57:B (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351860 5h57:C (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351861 5h57:D (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351862 5h57:E (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351863 5h57:F (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351864 5h58:A (3.991) BS01 dna ? GO:0000976 ... Q7AKF2 28343010
    351865 5h58:A (3.991) BS02 dna ? GO:0000976 ... Q7AKF2 28343010
    351866 5h58:B (3.991) BS01 dna ? GO:0000976 ... Q7AKF2 28343010
    351867 5h58:B (3.991) BS02 dna ? GO:0000976 ... Q7AKF2 28343010
    351868 5h58:C (3.991) BS01 dna ? GO:0000976 ... Q7AKF2 28343010
    351869 5h58:C (3.991) BS02 dna ? GO:0000976 ... Q7AKF2 28343010
    351870 5h58:D (3.991) BS01 dna ? GO:0000976 ... Q7AKF2 28343010
    351871 5h58:D (3.991) BS02 dna ? GO:0000976 ... Q7AKF2 28343010
    351872 5h59:A (1.65) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28093652
    351873 5h5a:A (2.26) BS01 6OU ? GO:0007005 ... Q6CUC3 29279306
    351874 5h5a:A (2.26) BS02 6OU ? GO:0007005 ... Q6CUC3 29279306
    351875 5h5a:B (2.26) BS01 6OU ? GO:0007005 ... Q6CUC3 29279306
    351876 5h5a:C (2.26) BS01 6OU ? GO:0007005 ... Q6CUC3 29279306
    351877 5h5a:C (2.26) BS02 6OU ? GO:0007005 ... Q6CUC3 29279306
    351878 5h5a:D (2.26) BS01 6OU ? GO:0007005 ... Q6CUC3 29279306
    351879 5h5d:A (2.7) BS01 MTA 2.1.1.- GO:0005575 ... Q12314 27990635
    351880 5h5e:A (2.09) BS01 SAH 2.1.1.- GO:0005575 ... Q12314 27990635
    351881 5h5f:A (1.7) BS01 SAM 2.1.1.- GO:0005575 ... Q12314 27990635 MOAD: Kd=37.2uM
    351882 5h5g:A (2.2) BS01 GDP ? GO:0003924 ... Q6GHP9 28456664
    351883 5h5g:A (2.2) BS02 CA ? GO:0003924 ... Q6GHP9 28456664
    351884 5h5g:B (2.2) BS01 GDP ? GO:0003924 ... Q6GHP9 28456664
    351885 5h5h:A (1.7) BS01 GDP ? GO:0003924 ... Q6GHP9 28456664
    351886 5h5h:A (1.7) BS02 CA ? GO:0003924 ... Q6GHP9 28456664
    351887 5h5i:A (1.9) BS01 GDP ? GO:0003924 ... Q6GHP9 28456664
    351888 5h5j:A (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28093652
    351889 5h5j:B (2.5) BS01 FES ? GO:0009055 ... P27788 28093652
    351890 5h5j:C (2.5) BS01 FAD 1.18.1.2 GO:0016491 ... B4G043 28093652
    351891 5h5k:A (2.3) BS01 ATP 2.7.4.9 GO:0004798 ... O67099 28627020
    351892 5h5k:A (2.3) BS02 C5P 2.7.4.9 GO:0004798 ... O67099 28627020
    351893 5h5k:B (2.3) BS01 ATP 2.7.4.9 GO:0004798 ... O67099 28627020
    351894 5h5k:B (2.3) BS02 C5P 2.7.4.9 GO:0004798 ... O67099 28627020
    351895 5h5l:A (1.999) BS01 GSH 2.5.1.18 GO:0004364 ... J9Q529 28803983
    351896 5h5l:B (1.999) BS01 GSH 2.5.1.18 GO:0004364 ... J9Q529 28803983
    351897 5h5o:A (2.122) BS01 PCG 2.7.7.65 N/A B0RM05 23881098 MOAD: Kd=0.293uM
    351898 5h5o:B (2.122) BS01 PCG 2.7.7.65 N/A B0RM05 23881098 MOAD: Kd=0.293uM
    351899 5h5q:A (1.1) BS01 peptide 1.11.1.12
    1.11.1.9
    GO:0004601 ... P36969 27836545
    351900 5h5r:A (1.2) BS01 peptide 1.11.1.12
    1.11.1.9
    GO:0004601 ... P36969 27836545
    351901 5h5s:A (1.85) BS01 peptide 1.11.1.12
    1.11.1.9
    GO:0004601 ... P36969 27836545
    351902 5h5u:1 (3.01) BS01 rna ? GO:0000028 ... P0A7U7 27906160
    351903 5h5u:2 (3.01) BS01 rna ? GO:0000028 ... P68679 27906160
    351904 5h5u:3 (3.01) BS01 rna ? GO:0000049 ... P36675 27906160
    351905 5h5u:3 (3.01) BS02 rna ? GO:0000049 ... P36675 27906160
    351906 5h5u:4 (3.01) BS01 rna ? GO:0003747 ... P07012 27906160
    351907 5h5u:4 (3.01) BS02 rna ? GO:0003747 ... P07012 27906160
    351908 5h5u:C (3.01) BS01 rna ? GO:0000027 ... P60422 27906160
    351909 5h5u:D (3.01) BS01 rna ? GO:0000027 ... P60438 27906160
    351910 5h5u:E (3.01) BS01 rna ? GO:0001070 ... P60723 27906160
    351911 5h5u:F (3.01) BS01 rna ? GO:0000027 ... P62399 27906160
    351912 5h5u:F (3.01) BS02 rna ? GO:0000027 ... P62399 27906160
    351913 5h5u:F (3.01) BS03 rna ? GO:0000027 ... P62399 27906160
    351914 5h5u:G (3.01) BS01 rna ? GO:0000027 ... P0AG55 27906160
    351915 5h5u:H (3.01) BS01 rna ? GO:0002181 ... P0A7R1 27906160
    351916 5h5u:I (3.01) BS01 rna ? GO:0002181 ... P0A7J3 27906160
    351917 5h5u:J (3.01) BS01 rna ? GO:0000027 ... P0A7J7 27906160
    351918 5h5u:K (3.01) BS01 rna ? GO:0002181 ... P0AA10 27906160
    351919 5h5u:L (3.01) BS01 rna ? GO:0002181 ... P0ADY3 27906160
    351920 5h5u:L (3.01) BS02 rna ? GO:0002181 ... P0ADY3 27906160
    351921 5h5u:M (3.01) BS01 rna ? GO:0002181 ... P02413 27906160
    351922 5h5u:N (3.01) BS01 rna ? GO:0000027 ... P0ADY7 27906160
    351923 5h5u:N (3.01) BS02 rna ? GO:0000027 ... P0ADY7 27906160
    351924 5h5u:O (3.01) BS01 rna ? GO:0000027 ... P0AG44 27906160
    351925 5h5u:P (3.01) BS01 rna ? GO:0002181 ... P0C018 27906160
    351926 5h5u:P (3.01) BS02 rna ? GO:0002181 ... P0C018 27906160
    351927 5h5u:Q (3.01) BS01 rna ? GO:0000027 ... P0A7K6 27906160
    351928 5h5u:Q (3.01) BS02 rna ? GO:0000027 ... P0A7K6 27906160
    351929 5h5u:R (3.01) BS01 rna ? GO:0000027 ... P0A7L3 27906160
    351930 5h5u:S (3.01) BS01 rna ? GO:0002181 ... P0AG48 27906160
    351931 5h5u:T (3.01) BS01 rna ? GO:0002181 ... P61175 27906160
    351932 5h5u:U (3.01) BS01 rna ? GO:0000027 ... P0ADZ0 27906160
    351933 5h5u:V (3.01) BS01 rna ? GO:0000027 ... P60624 27906160
    351934 5h5u:W (3.01) BS01 rna ? GO:0000027 ... P68919 27906160
    351935 5h5u:X (3.01) BS01 rna ? GO:0000027 ... P0A7L8 27906160
    351936 5h5u:X (3.01) BS02 rna ? GO:0000027 ... P0A7L8 27906160
    351937 5h5u:Y (3.01) BS01 rna ? GO:0000027 ... P0A7M2 27906160
    351938 5h5u:Z (3.01) BS01 rna ? GO:0000027 ... P0A7M6 27906160
    351939 5h5u:a (3.01) BS01 rna ? GO:0000027 ... P0AG51 27906160
    351940 5h5u:a (3.01) BS02 rna ? GO:0000027 ... P0AG51 27906160
    351941 5h5u:b (3.01) BS01 rna ? GO:0000027 ... P0A7N4 27906160
    351942 5h5u:c (3.01) BS01 rna ? GO:0000027 ... P0A7N9 27906160
    351943 5h5u:d (3.01) BS01 rna ? GO:0002181 ... P0A7P5 27906160
    351944 5h5u:e (3.01) BS01 rna ? GO:0002181 ... P0A7Q1 27906160
    351945 5h5u:f (3.01) BS01 rna ? GO:0002181 ... P0A7Q6 27906160
    351946 5h5u:i (3.01) BS01 rna ? GO:0000028 ... P0A7V0 27906160
    351947 5h5u:j (3.01) BS01 rna ? GO:0000028 ... P0A7V3 27906160
    351948 5h5u:k (3.01) BS01 rna ? GO:0000028 ... P0A7V8 27906160
    351949 5h5u:l (3.01) BS01 rna ? GO:0000028 ... P0A7W1 27906160
    351950 5h5u:m (3.01) BS01 rna ? GO:0002181 ... P02358 27906160
    351951 5h5u:n (3.01) BS01 rna ? GO:0000028 ... P02359 27906160
    351952 5h5u:o (3.01) BS01 rna ? GO:0000028 ... P0A7W7 27906160
    351953 5h5u:p (3.01) BS01 rna ? GO:0000049 ... P0A7X3 27906160
    351954 5h5u:p (3.01) BS02 rna ? GO:0000049 ... P0A7X3 27906160
    351955 5h5u:q (3.01) BS01 rna ? GO:0000049 ... P0A7R5 27906160
    351956 5h5u:r (3.01) BS01 rna ? GO:0002181 ... P0A7R9 27906160
    351957 5h5u:s (3.01) BS01 rna ? GO:0000049 ... P0A7S3 27906160
    351958 5h5u:t (3.01) BS01 rna ? GO:0000049 ... P0A7S9 27906160
    351959 5h5u:u (3.01) BS01 rna ? GO:0000028 ... P0AG59 27906160
    351960 5h5u:v (3.01) BS01 rna ? GO:0000028 ... P0ADZ4 27906160
    351961 5h5u:v (3.01) BS02 rna ? GO:0000028 ... P0ADZ4 27906160
    351962 5h5u:w (3.01) BS01 rna ? GO:0000028 ... P0A7T3 27906160
    351963 5h5u:x (3.01) BS01 rna ? GO:0000028 ... P0AG63 27906160
    351964 5h5u:y (3.01) BS01 rna ? GO:0002181 ... P0A7T7 27906160
    351965 5h5u:z (3.01) BS01 rna ? GO:0000028 ... P0A7U3 27906160
    351966 5h5x:A (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351967 5h5x:B (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351968 5h5x:C (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351969 5h5x:D (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351970 5h5x:E (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351971 5h5x:F (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351972 5h5x:G (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351973 5h5x:H (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351974 5h5x:I (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351975 5h5x:J (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351976 5h5x:K (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351977 5h5x:L (2.3) BS01 NAI ? GO:0000166 ... Q9KYM4 N/A
    351978 5h5z:A (1.74) BS01 peptide ? N/A Q65XY8 32438322
    351979 5h60:A (3.64) BS01 UDP 2.4.1.- GO:0005576 ... Q9L9J3 30327479
    351980 5h60:A (3.64) BS02 MN 2.4.1.- GO:0005576 ... Q9L9J3 30327479
    351981 5h62:A (1.66) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351982 5h62:A (1.66) BS02 UDP 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351983 5h62:B (1.66) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351984 5h62:B (1.66) BS02 UDP 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351985 5h62:B (1.66) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351986 5h63:A (1.92) BS01 UD1 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351987 5h63:A (1.92) BS02 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351988 5h63:A (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351989 5h63:B (1.92) BS01 UD1 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351990 5h63:B (1.92) BS02 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351991 5h63:B (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351992 5h63:C (1.92) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351993 5h63:C (1.92) BS02 UD1 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351994 5h63:C (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351995 5h63:D (1.92) BS01 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351996 5h63:D (1.92) BS02 UD1 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351997 5h63:D (1.92) BS03 MN 2.4.1.- GO:0005576 ... Q8ZNP4 30327479
    351998 5h65:A (2.1) BS01 ZN ? GO:0000723 ... Q9NUX5 28393832
    351999 5h67:A (2.07204) BS01 ATP ? N/A P51834 28286005
    352000 5h68:A (1.975) BS01 AGS N/A N/A N/A 28286005

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).