SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    352201 5h8l:L (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352202 5h8l:M (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352203 5h8l:N (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352204 5h8l:O (2.29) BS01 PUT 3.5.1.53 GO:0006596 ... G7ITU5 27066023
    352205 5h8m:A (2.7) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    352206 5h8n:A (2.5) BS01 GLU ? GO:0015276 ... Q12879 26875626
    352207 5h8n:A (2.5) BS02 5YD ? GO:0015276 ... Q12879 26875626
    352208 5h8n:B (2.5) BS01 5YD ? GO:0015276 ... Q05586 26875626
    352209 5h8n:B (2.5) BS02 GLY ? GO:0015276 ... Q05586 26875626
    352210 5h8q:A (1.9) BS01 GLU ? GO:0015276 ... Q12879 26875626
    352211 5h8q:A (1.9) BS02 5YE ? GO:0015276 ... Q12879 26875626
    352212 5h8q:B (1.9) BS01 GLY ? GO:0015276 ... Q05586 26875626
    352213 5h8q:B (1.9) BS02 5YE ? GO:0015276 ... Q05586 26875626
    352214 5h8s:A (1.703) BS01 GLU ? GO:0015276 ... P42262 26875626
    352215 5h8s:A (1.703) BS02 5YC ? GO:0015276 ... P42262 26875626 BindingDB: EC50=7500nM
    352216 5h8s:A (1.703) BS03 ZN ? GO:0015276 ... P42262 26875626
    352217 5h8s:B (1.703) BS01 5YC ? GO:0015276 ... P42262 26875626 BindingDB: EC50=7500nM
    352218 5h8s:B (1.703) BS02 GLU ? GO:0015276 ... P42262 26875626
    352219 5h8s:C (1.703) BS01 GLU ? GO:0015276 ... P42262 26875626
    352220 5h8s:C (1.703) BS02 5YC ? GO:0015276 ... P42262 26875626 BindingDB: EC50=7500nM
    352221 5h8s:C (1.703) BS03 ZN ? GO:0015276 ... P42262 26875626
    352222 5h8s:C (1.703) BS04 ZN ? GO:0015276 ... P42262 26875626
    352223 5h8t:A (1.21) BS01 RTL ? GO:0002138 ... P09455 26900151 MOAD: Kd=18.5nM
    352224 5h8u:A (2.85) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    352225 5h8u:B (2.85) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    352226 5h8v:A (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352227 5h8v:A (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352228 5h8v:A (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352229 5h8v:B (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352230 5h8v:B (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352231 5h8v:B (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352232 5h8w:A (2.2) BS01 dna 3.6.4.12 GO:0003676 ... Q9HM14 26896802
    352233 5h8w:A (2.2) BS02 SF4 3.6.4.12 GO:0003676 ... Q9HM14 26896802
    352234 5h8x:A (1.3) BS01 CA 3.4.24.34 GO:0004222 ... P22894 27556138
    352235 5h8x:A (1.3) BS02 CA 3.4.24.34 GO:0004222 ... P22894 27556138
    352236 5h8x:A (1.3) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 27556138
    352237 5h8x:A (1.3) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 27556138
    352238 5h8x:A (1.3) BS05 5XT 3.4.24.34 GO:0004222 ... P22894 27556138 MOAD: ic50=3.1uM
    352239 5h8x:A (1.3) BS06 7FY 3.4.24.34 GO:0004222 ... P22894 27556138 MOAD: ic50=3.1uM
    352240 5h8y:A (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352241 5h8y:A (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352242 5h8y:A (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352243 5h8y:B (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352244 5h8y:B (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352245 5h8y:B (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352246 5h8y:C (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352247 5h8y:C (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352248 5h8y:C (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352249 5h8y:D (2.2) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352250 5h8y:D (2.2) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352251 5h8y:D (2.2) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352252 5h8y:E (2.2) BS01 FES ? GO:0009055 ... P27787 26920048
    352253 5h8y:F (2.2) BS01 FES ? GO:0009055 ... P27787 26920048
    352254 5h8z:A (1.8) BS01 BCL ? GO:0015979 ... Q46393 27114180
    352255 5h8z:A (1.8) BS02 BCL ? GO:0015979 ... Q46393 27114180
    352256 5h8z:A (1.8) BS03 BCL ? GO:0015979 ... Q46393 27114180
    352257 5h8z:A (1.8) BS04 BCL ? GO:0015979 ... Q46393 27114180
    352258 5h8z:A (1.8) BS05 BCL ? GO:0015979 ... Q46393 27114180
    352259 5h8z:A (1.8) BS06 BCL ? GO:0015979 ... Q46393 27114180
    352260 5h8z:A (1.8) BS07 BCL ? GO:0015979 ... Q46393 27114180
    352261 5h8z:A (1.8) BS08 BCL ? GO:0015979 ... Q46393 27114180
    352262 5h8z:C (1.8) BS01 BCL ? GO:0015979 ... Q46393 27114180
    352263 5h8z:C (1.8) BS02 BCL ? GO:0015979 ... Q46393 27114180
    352264 5h8z:C (1.8) BS03 BCL ? GO:0015979 ... Q46393 27114180
    352265 5h8z:C (1.8) BS04 BCL ? GO:0015979 ... Q46393 27114180
    352266 5h8z:C (1.8) BS05 BCL ? GO:0015979 ... Q46393 27114180
    352267 5h8z:C (1.8) BS06 BCL ? GO:0015979 ... Q46393 27114180
    352268 5h8z:C (1.8) BS07 BCL ? GO:0015979 ... Q46393 27114180
    352269 5h8z:C (1.8) BS08 BCL ? GO:0015979 ... Q46393 27114180
    352270 5h92:A (2.08) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352271 5h92:A (2.08) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352272 5h92:A (2.08) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352273 5h92:B (2.08) BS01 SF4 1.8.7.1 GO:0000103 ... O23813 26920048
    352274 5h92:B (2.08) BS02 SRM 1.8.7.1 GO:0000103 ... O23813 26920048
    352275 5h92:B (2.08) BS03 MG 1.8.7.1 GO:0000103 ... O23813 26920048
    352276 5h92:C (2.08) BS01 FES ? GO:0009055 ... P27787 26920048
    352277 5h94:A (1.48) BS01 peptide ? N/A A0A0N9JT91 27170754
    352278 5h94:D (1.48) BS01 peptide ? N/A A0A0N9JT91 27170754
    352279 5h9b:A (2.25) BS01 peptide 2.7.11.17 GO:0004672 ... Q00168 30381148
    352280 5h9b:A (2.25) BS02 AN2 2.7.11.17 GO:0004672 ... Q00168 30381148
    352281 5h9b:A (2.25) BS03 MG 2.7.11.17 GO:0004672 ... Q00168 30381148
    352282 5h9d:A (2.68) BS01 peptide 2.5.1.30 GO:0000010 ... Q2FYG6 27457559
    352283 5h9d:A (2.68) BS02 PO4 2.5.1.30 GO:0000010 ... Q2FYG6 27457559
    352284 5h9d:B (2.68) BS01 peptide 2.5.1.30 GO:0000010 ... Q2FYG6 27457559
    352285 5h9d:B (2.68) BS02 PO4 2.5.1.30 GO:0000010 ... Q2FYG6 27457559
    352286 5h9e:A (3.21) BS01 rna ? GO:0003677 ... Q46901 26863189
    352287 5h9e:A (3.21) BS02 dna ? GO:0003677 ... Q46901 26863189
    352288 5h9e:A (3.21) BS03 dna ? GO:0003677 ... Q46901 26863189
    352289 5h9e:A (3.21) BS04 ZN ? GO:0003677 ... Q46901 26863189
    352290 5h9e:B (3.21) BS01 dna ? GO:0003676 ... P76632 26863189
    352291 5h9e:C (3.21) BS01 dna ? GO:0003676 ... P76632 26863189
    352292 5h9e:C (3.21) BS02 dna ? GO:0003676 ... P76632 26863189
    352293 5h9e:D (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352294 5h9e:D (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352295 5h9e:E (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352296 5h9e:E (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352297 5h9e:F (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352298 5h9e:F (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352299 5h9e:G (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352300 5h9e:G (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352301 5h9e:H (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352302 5h9e:H (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352303 5h9e:I (3.21) BS01 rna ? GO:0003723 ... Q46899 26863189
    352304 5h9e:I (3.21) BS02 dna ? GO:0003723 ... Q46899 26863189
    352305 5h9e:J (3.21) BS01 rna ? GO:0003723 ... Q46898 26863189
    352306 5h9e:K (3.21) BS01 rna 3.1.-.- GO:0003723 ... Q46897 26863189
    352307 5h9f:A (2.45) BS01 rna ? GO:0003677 ... Q46901 26863189
    352308 5h9f:A (2.45) BS02 dna ? GO:0003677 ... Q46901 26863189
    352309 5h9f:A (2.45) BS03 dna ? GO:0003677 ... Q46901 26863189
    352310 5h9f:A (2.45) BS04 ZN ? GO:0003677 ... Q46901 26863189
    352311 5h9f:B (2.45) BS01 dna ? GO:0003676 ... P76632 26863189
    352312 5h9f:C (2.45) BS01 dna ? GO:0003676 ... P76632 26863189
    352313 5h9f:D (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352314 5h9f:D (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352315 5h9f:E (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352316 5h9f:E (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352317 5h9f:F (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352318 5h9f:F (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352319 5h9f:G (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352320 5h9f:G (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352321 5h9f:H (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352322 5h9f:H (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352323 5h9f:I (2.45) BS01 rna ? GO:0003723 ... Q46899 26863189
    352324 5h9f:I (2.45) BS02 dna ? GO:0003723 ... Q46899 26863189
    352325 5h9f:J (2.45) BS01 rna ? GO:0003723 ... Q46898 26863189
    352326 5h9f:J (2.45) BS02 dna ? GO:0003723 ... Q46898 26863189
    352327 5h9f:K (2.45) BS01 rna 3.1.-.- GO:0003723 ... Q46897 26863189
    352328 5h9i:A (1.501) BS01 XAN ? GO:0000703 ... Q39ZI0 27071000
    352329 5h9i:A (1.501) BS02 LEA ? GO:0000703 ... Q39ZI0 27071000
    352330 5h9l:A (1.37) BS01 EAH ? GO:0005576 ... Q7YT09 27124118
    352331 5h9l:A (1.37) BS02 GSH ? GO:0005576 ... Q7YT09 27124118
    352332 5h9m:A (1.761) BS01 ZN 2.3.2.27 GO:0005737 ... O43255 N/A
    352333 5h9m:A (1.761) BS02 ZN 2.3.2.27 GO:0005737 ... O43255 N/A
    352334 5h9m:B (1.761) BS01 ZN 2.3.2.27 GO:0005737 ... O43255 N/A
    352335 5h9m:B (1.761) BS02 ZN 2.3.2.27 GO:0005737 ... O43255 N/A
    352336 5h9n:A (1.28) BS01 LTX ? GO:0005576 ... Q7YT09 27124118 MOAD: Ka=21000000M^-1
    352337 5h9o:A (2.37) BS01 GLC 3.2.1.207 GO:0003824 ... Q8BHN3 27462106
    352338 5h9o:B (2.37) BS01 CA ? N/A O08795 27462106
    352339 5h9o:B (2.37) BS02 CA ? N/A O08795 27462106
    352340 5h9o:C (2.37) BS01 GLC 3.2.1.207 GO:0003824 ... Q8BHN3 27462106
    352341 5h9o:D (2.37) BS01 CA ? N/A O08795 27462106
    352342 5h9o:D (2.37) BS02 CA ? N/A O08795 27462106
    352343 5h9p:A (2.04) BS01 TD2 ? GO:0030246 ... P17931 27416897 MOAD: Kd=0.068uM
    352344 5h9q:B (1.931) BS01 TD2 ? GO:0005515 ... P47929 27416897 MOAD: Kd=38uM
    352345 5h9r:A (1.58) BS01 TGZ ? GO:0030246 ... P17931 27416897 MOAD: Kd=0.84uM
    352346 5h9s:B (1.821) BS01 TGZ ? GO:0005515 ... P47929 27416897 MOAD: Kd=87uM
    352347 5h9y:A (1.969) BS01 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352348 5h9y:A (1.969) BS02 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352349 5h9y:A (1.969) BS03 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352350 5h9y:A (1.969) BS04 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352351 5h9y:A (1.969) BS05 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352352 5h9y:A (1.969) BS06 BGC 3.2.1.39 GO:0030246 ... A0A1S4NYE2 28787048
    352353 5ha0:A (1.441) BS01 LTD ? GO:0005576 ... Q7YT09 27124118 MOAD: Kd<1nM
    352354 5ha1:A (1.35) BS01 RNE ? GO:0002138 ... P09455 26900151 MOAD: Kd=64.1nM
    352355 5ha5:B (1.95) BS01 NAD N/A GO:0016491 ... N/A N/A
    352356 5ha5:C (1.95) BS01 NAD N/A GO:0016491 ... N/A N/A
    352357 5ha5:D (1.95) BS01 NAD N/A GO:0016491 ... N/A N/A
    352358 5ha7:A (1.65) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 27721416 MOAD: Kd=0.21uM
    352359 5ha7:A (1.65) BS02 WY1 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 27721416 MOAD: Kd=0.104uM
    352360 5ha7:B (1.65) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 27721416 MOAD: Kd=0.21uM
    352361 5ha7:B (1.65) BS02 WY1 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 27721416 MOAD: Kd=0.104uM
    352362 5ha9:B (4.01) BS01 TP0 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 28442756
    352363 5haa:A (2.904) BS01 ZN N/A GO:0003723 ... N/A N/A
    352364 5haa:A (2.904) BS02 ZN N/A GO:0003723 ... N/A N/A
    352365 5haa:B (2.904) BS01 ZN N/A GO:0003723 ... N/A N/A
    352366 5haa:B (2.904) BS02 ZN N/A GO:0003723 ... N/A N/A
    352367 5hab:A (2.3) BS01 rna N/A GO:0003723 ... N/A N/A
    352368 5hab:B (2.3) BS01 rna N/A GO:0003723 ... N/A N/A
    352369 5hae:A (2.002) BS01 EAH ? GO:0005576 ... Q7YT09 27124118
    352370 5hae:A (2.002) BS02 GSH ? GO:0005576 ... Q7YT09 27124118
    352371 5han:A (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352372 5han:A (2.04) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352373 5han:A (2.04) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352374 5han:B (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352375 5han:B (2.04) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352376 5han:B (2.04) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352377 5han:C (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352378 5han:C (2.04) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352379 5han:C (2.04) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352380 5han:D (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352381 5han:D (2.04) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352382 5han:D (2.04) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352383 5han:E (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352384 5han:E (2.04) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352385 5han:E (2.04) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352386 5han:F (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352387 5han:F (2.04) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352388 5han:F (2.04) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352389 5han:G (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352390 5han:G (2.04) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352391 5han:G (2.04) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352392 5han:H (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352393 5han:H (2.04) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352394 5han:H (2.04) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352395 5han:I (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352396 5han:I (2.04) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352397 5han:I (2.04) BS03 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352398 5han:J (2.04) BS01 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352399 5han:J (2.04) BS02 CAP 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    352400 5han:J (2.04) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).