SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    352601 5hau:2T (3.0) BS02 MG ? GO:0003735 ... P60492 26809677
    352602 5hau:2T (3.0) BS03 MG ? GO:0003735 ... P60492 26809677
    352603 5hau:2U (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 26809677
    352604 5hau:2V (3.0) BS01 rna ? GO:0005840 ... Q5SHP0 26809677
    352605 5hau:2W (3.0) BS01 rna ? GO:0005840 ... Q5SHP9 26809677
    352606 5hau:2W (3.0) BS02 ZN ? GO:0005840 ... Q5SHP9 26809677
    352607 5hau:2X (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 26809677
    352608 5hau:2X (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 26809677
    352609 5hau:2Y (3.0) BS01 rna ? GO:0003735 ... P60493 26809677
    352610 5hau:2Y (3.0) BS02 rna ? GO:0003735 ... P60493 26809677
    352611 5hau:2Z (3.0) BS01 rna ? GO:0005840 ... P60494 26809677
    352612 5hau:2b (3.0) BS01 rna ? GO:0003735 ... P80371 26809677
    352613 5hau:2c (3.0) BS01 rna ? GO:0003729 ... P80372 26809677
    352614 5hau:2d (3.0) BS01 rna ? GO:0003735 ... P80373 26809677
    352615 5hau:2d (3.0) BS02 SF4 ? GO:0003735 ... P80373 26809677
    352616 5hau:2e (3.0) BS01 rna ? GO:0005840 ... Q5SHQ5 26809677
    352617 5hau:2f (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 26809677
    352618 5hau:2f (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 26809677
    352619 5hau:2g (3.0) BS01 rna ? GO:0000049 ... P17291 26809677
    352620 5hau:2h (3.0) BS01 rna N/A N/A N/A 26809677
    352621 5hau:2i (3.0) BS01 rna ? GO:0000049 ... P80374 26809677
    352622 5hau:2j (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 26809677
    352623 5hau:2j (3.0) BS02 MG ? GO:0000049 ... Q5SHN7 26809677
    352624 5hau:2k (3.0) BS01 rna ? GO:0005840 ... P80376 26809677
    352625 5hau:2l (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 26809677
    352626 5hau:2m (3.0) BS01 rna ? GO:0000049 ... P80377 26809677
    352627 5hau:2m (3.0) BS02 rna ? GO:0000049 ... P80377 26809677
    352628 5hau:2n (3.0) BS01 rna N/A N/A N/A 26809677
    352629 5hau:2n (3.0) BS02 ZN N/A N/A N/A 26809677
    352630 5hau:2o (3.0) BS01 rna ? GO:0005737 ... Q5SJ76 26809677
    352631 5hau:2o (3.0) BS02 rna ? GO:0005737 ... Q5SJ76 26809677
    352632 5hau:2p (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 26809677
    352633 5hau:2q (3.0) BS01 rna N/A N/A N/A 26809677
    352634 5hau:2r (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 26809677
    352635 5hau:2s (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 26809677
    352636 5hau:2t (3.0) BS01 rna ? GO:0005840 ... P80380 26809677
    352637 5hau:2z (3.0) BS01 rna ? GO:0003746 ... Q5SHN5
    Q5SLQ1
    26809677
    352638 5hau:2z (3.0) BS02 rna ? GO:0003746 ... Q5SHN5
    Q5SLQ1
    26809677
    352639 5hau:2z (3.0) BS03 rna ? GO:0003746 ... Q5SHN5
    Q5SLQ1
    26809677
    352640 5hau:2z (3.0) BS04 GDP ? GO:0003746 ... Q5SHN5
    Q5SLQ1
    26809677
    352641 5hav:A (1.268) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 26716352
    352642 5haw:A (1.89) BS01 dna ? GO:0000976 ... Q9KVD2 27091999
    352643 5haw:A (1.89) BS02 peptide ? GO:0000976 ... Q9KVD2 27091999
    352644 5haw:B (1.89) BS01 peptide ? GO:0000976 ... Q9KVD2 27091999
    352645 5hax:A (2.1) BS01 peptide ? GO:0005643 ... G0S7B6 27081075
    352646 5hb0:A (3.5) BS01 peptide ? GO:0005643 ... G0S7B6 27081075
    352647 5hb0:B (3.5) BS01 peptide ? GO:0005643 ... G0S7B6 27081075
    352648 5hb0:B (3.5) BS02 peptide ? GO:0005643 ... G0S7B6 27081075
    352649 5hb0:C (3.5) BS01 peptide ? GO:0005643 ... G0S7B6 27081075
    352650 5hb0:C (3.5) BS02 peptide ? GO:0005643 ... G0S7B6 27081075
    352651 5hb0:D (3.5) BS01 peptide ? GO:0005643 ... G0S7B6 27081075
    352652 5hb3:A (2.65) BS01 peptide ? GO:0005643 ... G0S024 27081075
    352653 5hb3:C (2.65) BS01 peptide ? GO:0005643 ... G0S024 27081075
    352654 5hbc:A (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 26850578
    352655 5hbc:A (2.79) BS02 BCT 3.4.21.- GO:0005576 ... P24627 26850578
    352656 5hbc:B (2.79) BS01 FE 3.4.21.- GO:0005576 ... P24627 26850578
    352657 5hbc:B (2.79) BS02 BCT 3.4.21.- GO:0005576 ... P24627 26850578
    352658 5hbe:A (2.38) BS01 5Y6 2.7.11.22
    2.7.11.23
    GO:0004672 ... P49336 26796641 MOAD: ic50=2.3nM
    BindingDB: IC50=2.3nM
    352659 5hbh:A (2.5) BS01 5Y7 2.7.11.22
    2.7.11.23
    GO:0004672 ... P49336 26796641 MOAD: ic50=49.2nM
    BindingDB: IC50=49nM
    352660 5hbi:A (1.6) BS01 HEM ? GO:0005344 ... P02213 9826511
    352661 5hbi:A (1.6) BS02 HEM ? GO:0005344 ... P02213 9826511
    352662 5hbi:B (1.6) BS01 HEM ? GO:0005344 ... P02213 9826511
    352663 5hbi:B (1.6) BS02 HEM ? GO:0005344 ... P02213 9826511
    352664 5hbj:A (3.0) BS01 5Y8 2.7.11.22
    2.7.11.23
    GO:0004672 ... P49336 26796641 BindingDB: IC50=2.3nM
    352665 5hbm:A (3.043) BS01 F95 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 N/A
    352666 5hbm:A (3.043) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 N/A
    352667 5hbm:A (3.043) BS03 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 N/A
    352668 5hbn:A (1.602) BS01 RPI ? N/A P37571 27749819 MOAD: Kd=12.9uM
    352669 5hbn:A (1.602) BS02 RPI ? N/A P37571 27749819 MOAD: Kd=12.9uM
    352670 5hbr:A (1.995) BS01 COA ? GO:0000166 ... B1L3C9 26787904
    352671 5hbr:A (1.995) BS02 MG ? GO:0000166 ... B1L3C9 26787904
    352672 5hbr:C (1.995) BS01 COA ? GO:0000166 ... B1L3C9 26787904
    352673 5hbs:A (0.89) BS01 RTL ? GO:0002138 ... P09455 26900151 MOAD: Kd=18.5nM
    352674 5hbu:A (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352675 5hbu:A (2.6) BS02 dna ? GO:0000918 ... P0C093 27091999
    352676 5hbu:B (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352677 5hbu:C (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352678 5hbu:C (2.6) BS02 dna ? GO:0000918 ... P0C093 27091999
    352679 5hbu:D (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352680 5hbu:E (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352681 5hbu:E (2.6) BS02 dna ? GO:0000918 ... P0C093 27091999
    352682 5hbu:F (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352683 5hbu:F (2.6) BS02 peptide ? GO:0000918 ... P0C093 27091999
    352684 5hbu:G (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352685 5hbu:G (2.6) BS02 dna ? GO:0000918 ... P0C093 27091999
    352686 5hbu:H (2.6) BS01 dna ? GO:0000918 ... P0C093 27091999
    352687 5hbv:A (2.7) BS01 MAN ? GO:0005515 ... P60616 28440223
    352688 5hc0:A (1.4) BS01 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352689 5hc0:A (1.4) BS02 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352690 5hc0:A (1.4) BS03 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352691 5hc0:A (1.4) BS04 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352692 5hc0:A (1.4) BS05 NPO 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352693 5hc2:A (1.986) BS01 NPO 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352694 5hc2:B (1.986) BS01 NPO 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352695 5hc2:C (1.986) BS01 NPO 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352696 5hc2:D (1.986) BS01 NPO 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352697 5hc3:B (2.4) BS01 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352698 5hc3:B (2.4) BS02 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352699 5hc3:B (2.4) BS03 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352700 5hc3:D (2.4) BS01 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352701 5hc4:A (2.0) BS01 GOL 3.1.1.- GO:0016787 ... H6BDX1 27328716
    352702 5hc7:A (2.05) BS01 DST 2.5.1.- GO:0009409 ... A0A140UHQ1 26922900
    352703 5hc7:A (2.05) BS02 DST 2.5.1.- GO:0009409 ... A0A140UHQ1 26922900
    352704 5hc8:A (1.87) BS01 PIS 2.5.1.- GO:0009409 ... A0A140UHQ1 26922900
    352705 5hc8:A (1.87) BS02 61G 2.5.1.- GO:0009409 ... A0A140UHQ1 26922900
    352706 5hc8:A (1.87) BS03 ISY 2.5.1.- GO:0009409 ... A0A140UHQ1 26922900
    352707 5hc9:A (2.9) BS01 rna 2.7.7.72 GO:0003723 ... Q9WZH4 27133023
    352708 5hc9:A (2.9) BS02 MG 2.7.7.72 GO:0003723 ... Q9WZH4 27133023
    352709 5hc9:B (2.9) BS01 rna 2.7.7.72 GO:0003723 ... Q9WZH4 27133023
    352710 5hc9:B (2.9) BS02 MG 2.7.7.72 GO:0003723 ... Q9WZH4 27133023
    352711 5hca:A (2.15) BS01 CA ? GO:0005509 ... P83003 27840680
    352712 5hca:A (2.15) BS02 BGC ? GO:0005509 ... P83003 27840680
    352713 5hca:B (2.15) BS01 CA ? GO:0005509 ... P83003 27840680
    352714 5hca:C (2.15) BS01 CA ? GO:0005509 ... P83003 27840680
    352715 5hcb:A (2.9) BS01 CA ? GO:0005509 ... P83003 27840680
    352716 5hcb:B (2.9) BS01 CA ? GO:0005509 ... P83003 27840680
    352717 5hcc:A (2.59) BS01 CYS ? GO:0004866 ... P01031 27018802
    352718 5hcd:A (2.98) BS01 CYS ? GO:0004866 ... P01031 27018802
    352719 5hce:A (3.12) BS01 CYS ? GO:0004866 ... P01031 27018802
    352720 5hcf:B (2.451) BS01 BGC ? GO:0005509 ... Q4CPZ0 27840680
    352721 5hcf:F (2.451) BS01 BGC ? GO:0005509 ... Q4CPZ0 27840680
    352722 5hch:A (2.9) BS01 CA ? GO:0030246 ... Q9HYN5 26898721
    352723 5hch:A (2.9) BS02 CA ? GO:0030246 ... Q9HYN5 26898721
    352724 5hch:A (2.9) BS03 61J ? GO:0030246 ... Q9HYN5 26898721
    352725 5hci:A (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352726 5hci:B (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352727 5hci:C (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352728 5hci:D (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352729 5hci:E (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352730 5hci:F (2.3) BS01 GDP 3.6.5.- GO:0003924 ... P47122 26711263
    352731 5hcl:A (1.5) BS01 5Y9 ? N/A O60885 28176838 MOAD: ic50=6mM
    352732 5hco:A (1.17) BS01 601 3.4.23.22 GO:0004190 ... P11838 N/A
    352733 5hcp:10 (2.894) BS01 rna ? GO:0003735 ... P60493 26809677
    352734 5hcp:10 (2.894) BS02 rna ? GO:0003735 ... P60493 26809677
    352735 5hcp:10 (2.894) BS03 MG ? GO:0003735 ... P60493 26809677
    352736 5hcp:11 (2.894) BS01 rna ? GO:0005840 ... P60494 26809677
    352737 5hcp:12 (2.894) BS01 rna ? GO:0005840 ... Q5SHP6 26809677
    352738 5hcp:13 (2.894) BS01 rna ? GO:0005840 ... Q5SHQ6 26809677
    352739 5hcp:13 (2.894) BS02 rna ? GO:0005840 ... Q5SHQ6 26809677
    352740 5hcp:14 (2.894) BS01 rna ? GO:0005840 ... Q5SJE1 26809677
    352741 5hcp:14 (2.894) BS02 ZN ? GO:0005840 ... Q5SJE1 26809677
    352742 5hcp:15 (2.894) BS01 rna ? GO:0005840 ... P80339 26809677
    352743 5hcp:15 (2.894) BS02 MG ? GO:0005840 ... P80339 26809677
    352744 5hcp:15 (2.894) BS03 ZN ? GO:0005840 ... P80339 26809677
    352745 5hcp:15 (2.894) BS04 MG ? GO:0005840 ... P80339 26809677
    352746 5hcp:15 (2.894) BS05 MG ? GO:0005840 ... P80339 26809677
    352747 5hcp:16 (2.894) BS01 rna ? GO:0000049 ... P35871 26809677
    352748 5hcp:16 (2.894) BS02 ZN ? GO:0000049 ... P35871 26809677
    352749 5hcp:17 (2.894) BS01 rna ? GO:0005840 ... P80340 26809677
    352750 5hcp:17 (2.894) BS02 MG ? GO:0005840 ... P80340 26809677
    352751 5hcp:17 (2.894) BS03 MG ? GO:0005840 ... P80340 26809677
    352752 5hcp:17 (2.894) BS04 MG ? GO:0005840 ... P80340 26809677
    352753 5hcp:17 (2.894) BS05 MG ? GO:0005840 ... P80340 26809677
    352754 5hcp:18 (2.894) BS01 rna ? GO:0003735 ... Q5SKU1 26809677
    352755 5hcp:18 (2.894) BS02 MG ? GO:0003735 ... Q5SKU1 26809677
    352756 5hcp:19 (2.894) BS01 rna ? GO:0005737 ... Q5SHR2 26809677
    352757 5hcp:19 (2.894) BS02 ZN ? GO:0005737 ... Q5SHR2 26809677
    352758 5hcp:19 (2.894) BS03 MG ? GO:0005737 ... Q5SHR2 26809677
    352759 5hcp:1D (2.894) BS01 rna ? GO:0002181 ... P60405 26809677
    352760 5hcp:1D (2.894) BS02 rna ? GO:0002181 ... P60405 26809677
    352761 5hcp:1D (2.894) BS03 MG ? GO:0002181 ... P60405 26809677
    352762 5hcp:1D (2.894) BS04 MG ? GO:0002181 ... P60405 26809677
    352763 5hcp:1D (2.894) BS05 MG ? GO:0002181 ... P60405 26809677
    352764 5hcp:1D (2.894) BS06 MG ? GO:0002181 ... P60405 26809677
    352765 5hcp:1D (2.894) BS07 MG ? GO:0002181 ... P60405 26809677
    352766 5hcp:1D (2.894) BS08 MG ? GO:0002181 ... P60405 26809677
    352767 5hcp:1D (2.894) BS09 MG ? GO:0002181 ... P60405 26809677
    352768 5hcp:1D (2.894) BS10 MG ? GO:0002181 ... P60405 26809677
    352769 5hcp:1D (2.894) BS11 MG ? GO:0002181 ... P60405 26809677
    352770 5hcp:1D (2.894) BS12 MG ? GO:0002181 ... P60405 26809677
    352771 5hcp:1D (2.894) BS13 MG ? GO:0002181 ... P60405 26809677
    352772 5hcp:1D (2.894) BS14 MG ? GO:0002181 ... P60405 26809677
    352773 5hcp:1E (2.894) BS01 rna ? GO:0003735 ... Q5SHN8 26809677
    352774 5hcp:1E (2.894) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    352775 5hcp:1E (2.894) BS03 MG ? GO:0003735 ... Q5SHN8 26809677
    352776 5hcp:1F (2.894) BS01 rna ? GO:0003735 ... Q5SHN9 26809677
    352777 5hcp:1F (2.894) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    352778 5hcp:1F (2.894) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    352779 5hcp:1F (2.894) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    352780 5hcp:1F (2.894) BS05 MG ? GO:0003735 ... Q5SHN9 26809677
    352781 5hcp:1F (2.894) BS06 MG ? GO:0003735 ... Q5SHN9 26809677
    352782 5hcp:1F (2.894) BS07 MG ? GO:0003735 ... Q5SHN9 26809677
    352783 5hcp:1F (2.894) BS08 MG ? GO:0003735 ... Q5SHN9 26809677
    352784 5hcp:1F (2.894) BS09 MG ? GO:0003735 ... Q5SHN9 26809677
    352785 5hcp:1G (2.894) BS01 rna ? GO:0000049 ... Q5SHQ0 26809677
    352786 5hcp:1G (2.894) BS02 rna ? GO:0000049 ... Q5SHQ0 26809677
    352787 5hcp:1G (2.894) BS03 rna ? GO:0000049 ... Q5SHQ0 26809677
    352788 5hcp:1G (2.894) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    352789 5hcp:1H (2.894) BS01 rna N/A N/A N/A 26809677
    352790 5hcp:1H (2.894) BS02 MG N/A N/A N/A 26809677
    352791 5hcp:1I (2.894) BS01 rna ? GO:0005840 ... Q5SLQ1 26809677
    352792 5hcp:1N (2.894) BS01 rna ? GO:0003729 ... P60488 26809677
    352793 5hcp:1N (2.894) BS02 MG ? GO:0003729 ... P60488 26809677
    352794 5hcp:1N (2.894) BS03 MG ? GO:0003729 ... P60488 26809677
    352795 5hcp:1O (2.894) BS01 rna ? GO:0003735 ... Q5SHP8 26809677
    352796 5hcp:1O (2.894) BS02 rna ? GO:0003735 ... Q5SHP8 26809677
    352797 5hcp:1P (2.894) BS01 rna ? GO:0003735 ... Q5SHQ7 26809677
    352798 5hcp:1P (2.894) BS02 MG ? GO:0003735 ... Q5SHQ7 26809677
    352799 5hcp:1P (2.894) BS03 MG ? GO:0003735 ... Q5SHQ7 26809677
    352800 5hcp:1P (2.894) BS04 MG ? GO:0003735 ... Q5SHQ7 26809677

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).