SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    352801 5hcp:1Q (2.894) BS01 rna ? GO:0000049 ... P60489 26809677
    352802 5hcp:1Q (2.894) BS02 rna ? GO:0000049 ... P60489 26809677
    352803 5hcp:1Q (2.894) BS03 MG ? GO:0000049 ... P60489 26809677
    352804 5hcp:1Q (2.894) BS04 MG ? GO:0000049 ... P60489 26809677
    352805 5hcp:1Q (2.894) BS05 MG ? GO:0000049 ... P60489 26809677
    352806 5hcp:1Q (2.894) BS06 MG ? GO:0000049 ... P60489 26809677
    352807 5hcp:1R (2.894) BS01 rna ? GO:0003735 ... Q9Z9H5 26809677
    352808 5hcp:1R (2.894) BS02 MG ? GO:0003735 ... Q9Z9H5 26809677
    352809 5hcp:1R (2.894) BS03 MG ? GO:0003735 ... Q9Z9H5 26809677
    352810 5hcp:1S (2.894) BS01 rna ? GO:0005737 ... Q5SHQ4 26809677
    352811 5hcp:1S (2.894) BS02 rna ? GO:0005737 ... Q5SHQ4 26809677
    352812 5hcp:1T (2.894) BS01 rna ? GO:0003735 ... P60490 26809677
    352813 5hcp:1T (2.894) BS02 rna ? GO:0003735 ... P60490 26809677
    352814 5hcp:1U (2.894) BS01 rna ? GO:0000027 ... P60491 26809677
    352815 5hcp:1U (2.894) BS02 MG ? GO:0000027 ... P60491 26809677
    352816 5hcp:1U (2.894) BS03 MG ? GO:0000027 ... P60491 26809677
    352817 5hcp:1U (2.894) BS04 MG ? GO:0000027 ... P60491 26809677
    352818 5hcp:1U (2.894) BS05 MG ? GO:0000027 ... P60491 26809677
    352819 5hcp:1U (2.894) BS06 MG ? GO:0000027 ... P60491 26809677
    352820 5hcp:1U (2.894) BS07 MG ? GO:0000027 ... P60491 26809677
    352821 5hcp:1V (2.894) BS01 rna ? GO:0003735 ... P60492 26809677
    352822 5hcp:1V (2.894) BS02 MG ? GO:0003735 ... P60492 26809677
    352823 5hcp:1V (2.894) BS03 MG ? GO:0003735 ... P60492 26809677
    352824 5hcp:1V (2.894) BS04 MG ? GO:0003735 ... P60492 26809677
    352825 5hcp:1V (2.894) BS05 MG ? GO:0003735 ... P60492 26809677
    352826 5hcp:1V (2.894) BS06 MG ? GO:0003735 ... P60492 26809677
    352827 5hcp:1W (2.894) BS01 rna ? GO:0003735 ... Q5SHP3 26809677
    352828 5hcp:1W (2.894) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    352829 5hcp:1W (2.894) BS03 MG ? GO:0003735 ... Q5SHP3 26809677
    352830 5hcp:1X (2.894) BS01 rna ? GO:0005840 ... Q5SHP0 26809677
    352831 5hcp:1Y (2.894) BS01 rna ? GO:0005840 ... Q5SHP9 26809677
    352832 5hcp:1Y (2.894) BS02 ZN ? GO:0005840 ... Q5SHP9 26809677
    352833 5hcp:1Z (2.894) BS01 rna ? GO:0003723 ... Q5SHZ1 26809677
    352834 5hcp:1Z (2.894) BS02 rna ? GO:0003723 ... Q5SHZ1 26809677
    352835 5hcp:1b (2.894) BS01 rna ? GO:0003735 ... P80371 26809677
    352836 5hcp:1c (2.894) BS01 rna ? GO:0003729 ... P80372 26809677
    352837 5hcp:1d (2.894) BS01 rna ? GO:0003735 ... P80373 26809677
    352838 5hcp:1d (2.894) BS02 SF4 ? GO:0003735 ... P80373 26809677
    352839 5hcp:1d (2.894) BS03 MG ? GO:0003735 ... P80373 26809677
    352840 5hcp:1e (2.894) BS01 rna ? GO:0005840 ... Q5SHQ5 26809677
    352841 5hcp:1e (2.894) BS02 MG ? GO:0005840 ... Q5SHQ5 26809677
    352842 5hcp:1e (2.894) BS03 MG ? GO:0005840 ... Q5SHQ5 26809677
    352843 5hcp:1f (2.894) BS01 rna ? GO:0003735 ... Q5SLP8 26809677
    352844 5hcp:1g (2.894) BS01 rna ? GO:0000049 ... P17291 26809677
    352845 5hcp:1h (2.894) BS01 rna N/A N/A N/A 26809677
    352846 5hcp:1h (2.894) BS02 MG N/A N/A N/A 26809677
    352847 5hcp:1i (2.894) BS01 rna ? GO:0000049 ... P80374 26809677
    352848 5hcp:1i (2.894) BS02 rna ? GO:0000049 ... P80374 26809677
    352849 5hcp:1j (2.894) BS01 rna ? GO:0000049 ... Q5SHN7 26809677
    352850 5hcp:1k (2.894) BS01 rna ? GO:0005840 ... P80376 26809677
    352851 5hcp:1k (2.894) BS02 MG ? GO:0005840 ... P80376 26809677
    352852 5hcp:1l (2.894) BS01 rna ? GO:0000049 ... Q5SHN3 26809677
    352853 5hcp:1l (2.894) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    352854 5hcp:1m (2.894) BS01 rna ? GO:0000049 ... P80377 26809677
    352855 5hcp:1m (2.894) BS02 rna ? GO:0000049 ... P80377 26809677
    352856 5hcp:1m (2.894) BS03 MG ? GO:0000049 ... P80377 26809677
    352857 5hcp:1n (2.894) BS01 rna N/A N/A N/A 26809677
    352858 5hcp:1n (2.894) BS02 ZN N/A N/A N/A 26809677
    352859 5hcp:1n (2.894) BS03 MG N/A N/A N/A 26809677
    352860 5hcp:1o (2.894) BS01 rna ? GO:0005737 ... Q5SJ76 26809677
    352861 5hcp:1o (2.894) BS02 rna ? GO:0005737 ... Q5SJ76 26809677
    352862 5hcp:1p (2.894) BS01 rna ? GO:0003735 ... Q5SJH3 26809677
    352863 5hcp:1p (2.894) BS02 MG ? GO:0003735 ... Q5SJH3 26809677
    352864 5hcp:1q (2.894) BS01 rna N/A N/A N/A 26809677
    352865 5hcp:1r (2.894) BS01 rna ? GO:0003735 ... Q5SLQ0 26809677
    352866 5hcp:1r (2.894) BS02 MG ? GO:0003735 ... Q5SLQ0 26809677
    352867 5hcp:1s (2.894) BS01 rna ? GO:0000028 ... Q5SHP2 26809677
    352868 5hcp:1t (2.894) BS01 rna ? GO:0005840 ... P80380 26809677
    352869 5hcp:20 (2.894) BS01 rna ? GO:0003735 ... P60493 26809677
    352870 5hcp:20 (2.894) BS02 rna ? GO:0003735 ... P60493 26809677
    352871 5hcp:21 (2.894) BS01 rna ? GO:0005840 ... P60494 26809677
    352872 5hcp:22 (2.894) BS01 rna ? GO:0005840 ... Q5SHP6 26809677
    352873 5hcp:23 (2.894) BS01 rna ? GO:0005840 ... Q5SHQ6 26809677
    352874 5hcp:23 (2.894) BS02 rna ? GO:0005840 ... Q5SHQ6 26809677
    352875 5hcp:23 (2.894) BS03 MG ? GO:0005840 ... Q5SHQ6 26809677
    352876 5hcp:24 (2.894) BS01 rna ? GO:0005840 ... Q5SJE1 26809677
    352877 5hcp:24 (2.894) BS02 ZN ? GO:0005840 ... Q5SJE1 26809677
    352878 5hcp:25 (2.894) BS01 rna ? GO:0005840 ... P80339 26809677
    352879 5hcp:25 (2.894) BS02 ZN ? GO:0005840 ... P80339 26809677
    352880 5hcp:26 (2.894) BS01 rna ? GO:0000049 ... P35871 26809677
    352881 5hcp:26 (2.894) BS02 ZN ? GO:0000049 ... P35871 26809677
    352882 5hcp:27 (2.894) BS01 rna ? GO:0005840 ... P80340 26809677
    352883 5hcp:28 (2.894) BS01 rna ? GO:0003735 ... Q5SKU1 26809677
    352884 5hcp:29 (2.894) BS01 rna ? GO:0005737 ... Q5SHR2 26809677
    352885 5hcp:29 (2.894) BS02 ZN ? GO:0005737 ... Q5SHR2 26809677
    352886 5hcp:2D (2.894) BS01 rna ? GO:0002181 ... P60405 26809677
    352887 5hcp:2D (2.894) BS02 rna ? GO:0002181 ... P60405 26809677
    352888 5hcp:2D (2.894) BS03 MG ? GO:0002181 ... P60405 26809677
    352889 5hcp:2D (2.894) BS04 MG ? GO:0002181 ... P60405 26809677
    352890 5hcp:2D (2.894) BS05 MG ? GO:0002181 ... P60405 26809677
    352891 5hcp:2E (2.894) BS01 rna ? GO:0003735 ... Q5SHN8 26809677
    352892 5hcp:2E (2.894) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    352893 5hcp:2F (2.894) BS01 rna ? GO:0003735 ... Q5SHN9 26809677
    352894 5hcp:2F (2.894) BS02 MG ? GO:0003735 ... Q5SHN9 26809677
    352895 5hcp:2F (2.894) BS03 MG ? GO:0003735 ... Q5SHN9 26809677
    352896 5hcp:2F (2.894) BS04 MG ? GO:0003735 ... Q5SHN9 26809677
    352897 5hcp:2F (2.894) BS05 MG ? GO:0003735 ... Q5SHN9 26809677
    352898 5hcp:2F (2.894) BS06 MG ? GO:0003735 ... Q5SHN9 26809677
    352899 5hcp:2G (2.894) BS01 rna ? GO:0000049 ... Q5SHQ0 26809677
    352900 5hcp:2G (2.894) BS02 rna ? GO:0000049 ... Q5SHQ0 26809677
    352901 5hcp:2G (2.894) BS03 rna ? GO:0000049 ... Q5SHQ0 26809677
    352902 5hcp:2G (2.894) BS04 MG ? GO:0000049 ... Q5SHQ0 26809677
    352903 5hcp:2H (2.894) BS01 rna N/A N/A N/A 26809677
    352904 5hcp:2I (2.894) BS01 rna ? GO:0005840 ... Q5SLQ1 26809677
    352905 5hcp:2N (2.894) BS01 rna ? GO:0003729 ... P60488 26809677
    352906 5hcp:2O (2.894) BS01 rna ? GO:0003735 ... Q5SHP8 26809677
    352907 5hcp:2O (2.894) BS02 rna ? GO:0003735 ... Q5SHP8 26809677
    352908 5hcp:2P (2.894) BS01 rna ? GO:0003735 ... Q5SHQ7 26809677
    352909 5hcp:2Q (2.894) BS01 rna ? GO:0000049 ... P60489 26809677
    352910 5hcp:2Q (2.894) BS02 rna ? GO:0000049 ... P60489 26809677
    352911 5hcp:2Q (2.894) BS03 MG ? GO:0000049 ... P60489 26809677
    352912 5hcp:2Q (2.894) BS04 MG ? GO:0000049 ... P60489 26809677
    352913 5hcp:2R (2.894) BS01 rna ? GO:0003735 ... Q9Z9H5 26809677
    352914 5hcp:2S (2.894) BS01 rna ? GO:0005737 ... Q5SHQ4 26809677
    352915 5hcp:2S (2.894) BS02 rna ? GO:0005737 ... Q5SHQ4 26809677
    352916 5hcp:2T (2.894) BS01 rna ? GO:0003735 ... P60490 26809677
    352917 5hcp:2T (2.894) BS02 rna ? GO:0003735 ... P60490 26809677
    352918 5hcp:2U (2.894) BS01 rna ? GO:0000027 ... P60491 26809677
    352919 5hcp:2U (2.894) BS02 MG ? GO:0000027 ... P60491 26809677
    352920 5hcp:2V (2.894) BS01 rna ? GO:0003735 ... P60492 26809677
    352921 5hcp:2V (2.894) BS02 MG ? GO:0003735 ... P60492 26809677
    352922 5hcp:2V (2.894) BS03 MG ? GO:0003735 ... P60492 26809677
    352923 5hcp:2W (2.894) BS01 rna ? GO:0003735 ... Q5SHP3 26809677
    352924 5hcp:2W (2.894) BS02 MG ? GO:0003735 ... Q5SHP3 26809677
    352925 5hcp:2X (2.894) BS01 rna ? GO:0005840 ... Q5SHP0 26809677
    352926 5hcp:2Y (2.894) BS01 rna ? GO:0005840 ... Q5SHP9 26809677
    352927 5hcp:2Y (2.894) BS02 ZN ? GO:0005840 ... Q5SHP9 26809677
    352928 5hcp:2Z (2.894) BS01 rna ? GO:0003723 ... Q5SHZ1 26809677
    352929 5hcp:2Z (2.894) BS02 rna ? GO:0003723 ... Q5SHZ1 26809677
    352930 5hcp:2b (2.894) BS01 rna ? GO:0003735 ... P80371 26809677
    352931 5hcp:2c (2.894) BS01 rna ? GO:0003729 ... P80372 26809677
    352932 5hcp:2d (2.894) BS01 rna ? GO:0003735 ... P80373 26809677
    352933 5hcp:2d (2.894) BS02 SF4 ? GO:0003735 ... P80373 26809677
    352934 5hcp:2d (2.894) BS03 MG ? GO:0003735 ... P80373 26809677
    352935 5hcp:2e (2.894) BS01 rna ? GO:0005840 ... Q5SHQ5 26809677
    352936 5hcp:2e (2.894) BS02 MG ? GO:0005840 ... Q5SHQ5 26809677
    352937 5hcp:2f (2.894) BS01 rna ? GO:0003735 ... Q5SLP8 26809677
    352938 5hcp:2f (2.894) BS02 MG ? GO:0003735 ... Q5SLP8 26809677
    352939 5hcp:2g (2.894) BS01 rna ? GO:0000049 ... P17291 26809677
    352940 5hcp:2h (2.894) BS01 rna N/A N/A N/A 26809677
    352941 5hcp:2i (2.894) BS01 rna ? GO:0000049 ... P80374 26809677
    352942 5hcp:2i (2.894) BS02 rna ? GO:0000049 ... P80374 26809677
    352943 5hcp:2j (2.894) BS01 rna ? GO:0000049 ... Q5SHN7 26809677
    352944 5hcp:2k (2.894) BS01 rna ? GO:0005840 ... P80376 26809677
    352945 5hcp:2l (2.894) BS01 rna ? GO:0000049 ... Q5SHN3 26809677
    352946 5hcp:2l (2.894) BS02 MG ? GO:0000049 ... Q5SHN3 26809677
    352947 5hcp:2m (2.894) BS01 rna ? GO:0000049 ... P80377 26809677
    352948 5hcp:2n (2.894) BS01 rna N/A N/A N/A 26809677
    352949 5hcp:2n (2.894) BS02 ZN N/A N/A N/A 26809677
    352950 5hcp:2o (2.894) BS01 rna ? GO:0005737 ... Q5SJ76 26809677
    352951 5hcp:2o (2.894) BS02 rna ? GO:0005737 ... Q5SJ76 26809677
    352952 5hcp:2p (2.894) BS01 rna ? GO:0003735 ... Q5SJH3 26809677
    352953 5hcp:2q (2.894) BS01 rna N/A N/A N/A 26809677
    352954 5hcp:2r (2.894) BS01 rna ? GO:0003735 ... Q5SLQ0 26809677
    352955 5hcp:2s (2.894) BS01 rna ? GO:0000028 ... Q5SHP2 26809677
    352956 5hcp:2t (2.894) BS01 rna ? GO:0005840 ... P80380 26809677
    352957 5hcq:10 (2.801) BS01 rna ? GO:0003735 ... P60493 26809677
    352958 5hcq:10 (2.801) BS02 rna ? GO:0003735 ... P60493 26809677
    352959 5hcq:10 (2.801) BS03 MG ? GO:0003735 ... P60493 26809677
    352960 5hcq:10 (2.801) BS04 MG ? GO:0003735 ... P60493 26809677
    352961 5hcq:10 (2.801) BS05 MG ? GO:0003735 ... P60493 26809677
    352962 5hcq:11 (2.801) BS01 rna ? GO:0005840 ... P60494 26809677
    352963 5hcq:12 (2.801) BS01 rna ? GO:0005840 ... Q5SHP6 26809677
    352964 5hcq:13 (2.801) BS01 rna ? GO:0005840 ... Q5SHQ6 26809677
    352965 5hcq:13 (2.801) BS02 rna ? GO:0005840 ... Q5SHQ6 26809677
    352966 5hcq:14 (2.801) BS01 rna ? GO:0005840 ... Q5SJE1 26809677
    352967 5hcq:14 (2.801) BS02 ZN ? GO:0005840 ... Q5SJE1 26809677
    352968 5hcq:15 (2.801) BS01 rna ? GO:0005840 ... P80339 26809677
    352969 5hcq:15 (2.801) BS02 MG ? GO:0005840 ... P80339 26809677
    352970 5hcq:15 (2.801) BS03 ZN ? GO:0005840 ... P80339 26809677
    352971 5hcq:15 (2.801) BS04 MG ? GO:0005840 ... P80339 26809677
    352972 5hcq:16 (2.801) BS01 rna ? GO:0000049 ... P35871 26809677
    352973 5hcq:16 (2.801) BS02 MG ? GO:0000049 ... P35871 26809677
    352974 5hcq:16 (2.801) BS03 ZN ? GO:0000049 ... P35871 26809677
    352975 5hcq:17 (2.801) BS01 rna ? GO:0005840 ... P80340 26809677
    352976 5hcq:17 (2.801) BS02 MG ? GO:0005840 ... P80340 26809677
    352977 5hcq:17 (2.801) BS03 MG ? GO:0005840 ... P80340 26809677
    352978 5hcq:18 (2.801) BS01 rna ? GO:0003735 ... Q5SKU1 26809677
    352979 5hcq:18 (2.801) BS02 MG ? GO:0003735 ... Q5SKU1 26809677
    352980 5hcq:19 (2.801) BS01 rna ? GO:0005737 ... Q5SHR2 26809677
    352981 5hcq:19 (2.801) BS02 MG ? GO:0005737 ... Q5SHR2 26809677
    352982 5hcq:19 (2.801) BS03 ZN ? GO:0005737 ... Q5SHR2 26809677
    352983 5hcq:1D (2.801) BS01 rna ? GO:0002181 ... P60405 26809677
    352984 5hcq:1D (2.801) BS02 rna ? GO:0002181 ... P60405 26809677
    352985 5hcq:1D (2.801) BS03 MG ? GO:0002181 ... P60405 26809677
    352986 5hcq:1D (2.801) BS04 MG ? GO:0002181 ... P60405 26809677
    352987 5hcq:1D (2.801) BS05 MG ? GO:0002181 ... P60405 26809677
    352988 5hcq:1D (2.801) BS06 MG ? GO:0002181 ... P60405 26809677
    352989 5hcq:1D (2.801) BS07 MG ? GO:0002181 ... P60405 26809677
    352990 5hcq:1D (2.801) BS08 MG ? GO:0002181 ... P60405 26809677
    352991 5hcq:1D (2.801) BS09 MG ? GO:0002181 ... P60405 26809677
    352992 5hcq:1D (2.801) BS10 MG ? GO:0002181 ... P60405 26809677
    352993 5hcq:1D (2.801) BS11 MG ? GO:0002181 ... P60405 26809677
    352994 5hcq:1D (2.801) BS12 MG ? GO:0002181 ... P60405 26809677
    352995 5hcq:1D (2.801) BS13 MG ? GO:0002181 ... P60405 26809677
    352996 5hcq:1D (2.801) BS14 MG ? GO:0002181 ... P60405 26809677
    352997 5hcq:1D (2.801) BS15 MG ? GO:0002181 ... P60405 26809677
    352998 5hcq:1E (2.801) BS01 rna ? GO:0003735 ... Q5SHN8 26809677
    352999 5hcq:1E (2.801) BS02 MG ? GO:0003735 ... Q5SHN8 26809677
    353000 5hcq:1E (2.801) BS03 MG ? GO:0003735 ... Q5SHN8 26809677

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).