SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    35201 1nkw:O (3.1) BS01 rna ? GO:0000027 ... Q9RSW7 11733066
    35202 1nkw:Q (3.1) BS01 rna ? GO:0003735 ... Q9RXJ7 11733066
    35203 1nkw:X (3.1) BS01 rna ? GO:0003735 ... Q9RSL0 11733066
    35204 1nkw:Y (3.1) BS01 rna ? GO:0000049 ... Q9RW44 11733066
    35205 1nkw:Z (3.1) BS01 rna ? GO:0003735 ... P49228 11733066
    35206 1nkx:A (1.9) BS01 FE 3.4.21.- GO:0005576 ... P24627 12888354
    35207 1nkx:A (1.9) BS02 CO3 3.4.21.- GO:0005576 ... P24627 12888354
    35208 1nkz:A (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    35209 1nkz:A (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    35210 1nkz:A (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    35211 1nkz:B (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    35212 1nkz:B (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    35213 1nkz:B (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    35214 1nkz:C (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    35215 1nkz:C (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    35216 1nkz:C (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    35217 1nkz:C (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    35218 1nkz:D (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    35219 1nkz:D (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    35220 1nkz:D (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    35221 1nkz:E (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    35222 1nkz:E (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    35223 1nkz:E (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    35224 1nkz:E (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    35225 1nkz:F (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    35226 1nkz:F (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    35227 1nkz:F (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    35228 1nl0:G (2.2) BS01 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35229 1nl0:G (2.2) BS02 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35230 1nl0:G (2.2) BS03 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35231 1nl0:G (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35232 1nl0:G (2.2) BS05 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35233 1nl0:G (2.2) BS06 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    35234 1nl1:A (1.9) BS01 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35235 1nl1:A (1.9) BS02 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35236 1nl1:A (1.9) BS03 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35237 1nl1:A (1.9) BS04 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35238 1nl1:A (1.9) BS05 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35239 1nl1:A (1.9) BS06 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35240 1nl2:A (2.3) BS01 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35241 1nl2:A (2.3) BS02 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35242 1nl2:A (2.3) BS03 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35243 1nl2:A (2.3) BS04 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35244 1nl2:A (2.3) BS05 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35245 1nl2:A (2.3) BS06 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    35246 1nl2:A (2.3) BS07 LPS 3.4.21.5 GO:0005509 ... P00735 12923575
    35247 1nl4:B (2.7) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 12657284
    35248 1nl4:B (2.7) BS02 HFP 2.5.1.58 GO:0003824 ... Q02293 12657284
    35249 1nl4:B (2.7) BS03 FTL 2.5.1.58 GO:0003824 ... Q02293 12657284
    35250 1nl5:A (2.1) BS01 GLC ? GO:0005515 ... P0AEX9 12794084
    35251 1nl5:A (2.1) BS02 GLC ? GO:0005515 ... P0AEX9 12794084
    35252 1nl6:A (2.8) BS01 750 3.4.22.38 GO:0006508 ... P43235 11311061 BindingDB: IC50=30nM, Ki=0.0048nM
    35253 1nl6:B (2.8) BS01 750 3.4.22.38 GO:0006508 ... P43235 11311061 BindingDB: IC50=30nM, Ki=0.0048nM
    35254 1nl7:A (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    35255 1nl7:B (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    35256 1nl9:A (2.4) BS01 989 3.1.3.48 GO:0004725 ... P18031 12670229 BindingDB: Ki=631nM
    35257 1nlf:B (1.95) BS01 SO4 ? GO:0005524 ... P20356 12777796
    35258 1nli:A (1.93) BS01 ADE 3.2.2.22 GO:0006952 ... P09989 12676436 MOAD: Kd=260uM
    35259 1nlj:A (2.4) BS01 2CA 3.4.22.38 GO:0006508 ... P43235 11311061 BindingDB: Ki=0.16nM, IC50=70nM
    35260 1nlj:B (2.4) BS01 2CA 3.4.22.38 GO:0006508 ... P43235 11311061 BindingDB: Ki=0.16nM, IC50=70nM
    35261 1nlk:L (2.0) BS01 ADP 2.7.4.6 GO:0004550 ... P15266 8263923
    35262 1nlk:R (2.0) BS01 ADP 2.7.4.6 GO:0004550 ... P15266 8263923
    35263 1nlm:A (2.5) BS01 UD1 2.4.1.227 GO:0005515 ... P17443 12538870
    35264 1nlm:B (2.5) BS01 UD1 2.4.1.227 GO:0005515 ... P17443 12538870
    35265 1nln:A (1.6) BS01 peptide 3.4.22.39 GO:0003677 ... P03252 12758141
    35266 1nlo:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 8807900
    35267 1nlp:C (-1.00) BS01 peptide 2.7.10.2 GO:0006897 ... P00523 8807900
    35268 1nls:A (0.94) BS01 MN ? GO:0030246 ... P02866 N/A
    35269 1nls:A (0.94) BS02 CA ? GO:0030246 ... P02866 N/A
    35270 1nlt:A (2.7) BS01 peptide ? GO:0006457 ... P25491 14656432
    35271 1nlt:A (2.7) BS02 ZN ? GO:0006457 ... P25491 14656432
    35272 1nlt:A (2.7) BS03 ZN ? GO:0006457 ... P25491 14656432
    35273 1nlu:A (1.3) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 14733955
    35274 1nlu:A (1.3) BS02 peptide 3.4.21.100 GO:0004252 ... P42790 14733955
    35275 1nlu:A (1.3) BS03 CA 3.4.21.100 GO:0004252 ... P42790 14733955
    35276 1nlv:A (1.8) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    35277 1nlv:G (1.8) BS01 CA ? GO:0051015 ... P06396 12732734
    35278 1nlw:A (2.0) BS01 dna ? GO:0000122 ... Q05195 12553908
    35279 1nlw:A (2.0) BS02 dna ? GO:0000122 ... Q05195 12553908
    35280 1nlw:B (2.0) BS01 dna ? GO:0046983 ... P61244 12553908
    35281 1nlw:B (2.0) BS02 dna ? GO:0046983 ... P61244 12553908
    35282 1nlw:D (2.0) BS01 dna ? GO:0000122 ... Q05195 12553908
    35283 1nlw:D (2.0) BS02 dna ? GO:0000122 ... Q05195 12553908
    35284 1nlw:E (2.0) BS01 dna ? GO:0046983 ... P61244 12553908
    35285 1nlw:E (2.0) BS02 dna ? GO:0046983 ... P61244 12553908
    35286 1nlx:A (2.8) BS01 ZN ? N/A P43215 N/A
    35287 1nlx:D (2.8) BS01 ZN ? N/A P43215 N/A
    35288 1nlx:E (2.8) BS01 ZN ? N/A P43215 N/A
    35289 1nlx:F (2.8) BS01 ZN ? N/A P43215 N/A
    35290 1nlx:G (2.8) BS01 ZN ? N/A P43215 N/A
    35291 1nlx:I (2.8) BS01 ZN ? N/A P43215 N/A
    35292 1nlx:K (2.8) BS01 ZN ? N/A P43215 N/A
    35293 1nlx:L (2.8) BS01 ZN ? N/A P43215 N/A
    35294 1nlx:M (2.8) BS01 ZN ? N/A P43215 N/A
    35295 1nlx:N (2.8) BS01 ZN ? N/A P43215 N/A
    35296 1nly:A (2.8) BS01 AGS ? GO:0000166 ... Q7BK04 12727865
    35297 1nly:B (2.8) BS01 AGS ? GO:0000166 ... Q7BK04 12727865
    35298 1nm0:A (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    35299 1nm0:A (2.3) BS02 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    35300 1nm0:A (2.3) BS03 HEM 1.11.1.6 GO:0004096 ... P42321 14646074
    35301 1nm0:A (2.3) BS04 FMT 1.11.1.6 GO:0004096 ... P42321 14646074
    35302 1nm0:A (2.3) BS05 GOL 1.11.1.6 GO:0004096 ... P42321 14646074
    35303 1nm1:A (1.8) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    35304 1nm1:G (1.8) BS01 CA ? GO:0051015 ... P06396 12732734
    35305 1nm5:A (2.4) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 12564924 MOAD: Kd=20uM
    35306 1nm5:B (2.4) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 12564924 MOAD: Kd=20uM
    35307 1nm5:C (2.4) BS01 NAP 7.1.1.1 N/A Q2RSB4 12564924
    35308 1nm6:A (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12873514
    35309 1nm6:A (1.8) BS02 L86 3.4.21.5 GO:0004252 ... P00734 12873514 MOAD: Ki=0.09nM
    BindingDB: Ki=0.090000nM
    35310 1nm9:A (2.1) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35311 1nm9:A (2.1) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35312 1nm9:A (2.1) BS03 GLC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35313 1nm9:A (2.1) BS04 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35314 1nm9:A (2.1) BS05 HMC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35315 1nm9:A (2.1) BS06 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    35316 1nma:H (3.0) BS01 MAN N/A N/A N/A 7517697
    35317 1nma:N (3.0) BS01 MAN 3.2.1.18 GO:0004308 ... P05803 7517697
    35318 1nmb:H (2.2) BS01 MAN N/A N/A N/A 7994573
    35319 1nmb:N (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 7994573
    35320 1nmb:N (2.2) BS02 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    35321 1nmb:N (2.2) BS03 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    35322 1nmb:N (2.2) BS04 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    35323 1nmb:N (2.2) BS05 CA 3.2.1.18 GO:0004308 ... P05803 7994573
    35324 1nmc:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    35325 1nmc:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    35326 1nmd:A (1.9) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    35327 1nmd:G (1.9) BS01 CA ? GO:0051015 ... P06396 12732734
    35328 1nme:A (1.6) BS01 158 3.4.22.56 GO:0004197 ... P42574 12563278
    35329 1nme:B (1.6) BS01 158 3.4.22.56 GO:0004197 ... P42574 12563278
    35330 1nme:B (1.6) BS02 159 3.4.22.56 GO:0004197 ... P42574 12563278
    35331 1nmi:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 N/A
    35332 1nmk:A (2.1) BS01 SFM 5.2.1.8 GO:0000413 ... P62937 12656618 MOAD: ic50=5.7nM
    35333 1nmk:B (2.1) BS01 SFM 5.2.1.8 GO:0000413 ... P62937 12656618 MOAD: ic50=5.7nM
    35334 1nml:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    35335 1nml:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    35336 1nmm:A (2.0) BS01 CA ? GO:0004461 ... P29752 11485999
    35337 1nmm:C (2.0) BS01 CA ? GO:0004461 ... P29752 11485999
    35338 1nmo:A (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35339 1nmo:A (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35340 1nmo:B (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35341 1nmo:B (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35342 1nmo:C (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35343 1nmo:C (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35344 1nmo:D (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35345 1nmo:D (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35346 1nmo:E (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35347 1nmo:E (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35348 1nmo:F (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    35349 1nmo:F (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    35350 1nmp:A (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35351 1nmp:A (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    35352 1nmp:B (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35353 1nmp:C (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35354 1nmp:C (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    35355 1nmp:D (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35356 1nmp:D (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    35357 1nmp:E (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35358 1nmp:E (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    35359 1nmp:F (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    35360 1nmp:F (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    35361 1nmq:A (2.4) BS01 160 3.4.22.56 GO:0001554 ... P42574 12563278
    35362 1nmq:B (2.4) BS01 160 3.4.22.56 GO:0001554 ... P42574 12563278
    35363 1nms:A (1.7) BS01 161 3.4.22.56 GO:0001554 ... P42574 12563278
    35364 1nms:B (1.7) BS01 161 3.4.22.56 GO:0001554 ... P42574 12563278
    35365 1nmu:A (2.31) BS01 GLC ? GO:0005515 ... P0AEX9 12589748
    35366 1nmu:A (2.31) BS02 GLC ? GO:0005515 ... P0AEX9 12589748
    35367 1nmu:A (2.31) BS03 GLC ? GO:0005515 ... P0AEX9 12589748
    35368 1nmu:A (2.31) BS04 GLC ? GO:0005515 ... P0AEX9 12589748
    35369 1nmu:C (2.31) BS01 GLC ? GO:0005515 ... P0AEX9 12589748
    35370 1nmu:C (2.31) BS02 GLC ? GO:0005515 ... P0AEX9 12589748
    35371 1nmu:C (2.31) BS03 GLC ? GO:0005515 ... P0AEX9 12589748
    35372 1nmu:C (2.31) BS04 GLC ? GO:0005515 ... P0AEX9 12589748
    35373 1nmw:A (-1.00) BS01 SO4 5.2.1.8 GO:0003755 ... Q13526 12721297
    35374 1nmx:A (1.7) BS01 FDM 2.7.4.9 GO:0004550 ... P23919 12614151
    35375 1nmx:A (1.7) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    35376 1nmy:A (1.6) BS01 FDM 2.7.4.9 GO:0004550 ... P23919 12614151
    35377 1nmy:A (1.6) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    35378 1nmy:A (1.6) BS03 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    35379 1nmz:A (1.75) BS01 NYM 2.7.4.9 GO:0004550 ... P23919 12614151
    35380 1nmz:A (1.75) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    35381 1nn0:A (1.6) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    35382 1nn0:A (1.6) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    35383 1nn1:A (1.9) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    35384 1nn1:A (1.9) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    35385 1nn2:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P06820 1920428
    35386 1nn3:A (1.55) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    35387 1nn3:A (1.55) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    35388 1nn5:A (1.5) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    35389 1nn5:A (1.5) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    35390 1nn7:A (2.1) BS01 ZN ? GO:0005249 ... Q63881 12835418
    35391 1nna:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 8371267
    35392 1nnb:A (2.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 8371267
    35393 1nnb:A (2.8) BS02 DAN 3.2.1.18 GO:0004308 ... P03472 8371267 BindingDB: IC50=13000nM
    35394 1nnc:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 7549872
    35395 1nnc:A (1.8) BS02 ZMR 3.2.1.18 GO:0004308 ... P03472 7549872
    35396 1nne:A (3.11) BS01 dna ? GO:0003677 ... Q56215 12582174
    35397 1nne:A (3.11) BS02 dna ? GO:0003677 ... Q56215 12582174
    35398 1nne:A (3.11) BS03 BEF ? GO:0003677 ... Q56215 12582174
    35399 1nne:A (3.11) BS04 ADP ? GO:0003677 ... Q56215 12582174
    35400 1nne:B (3.11) BS01 dna ? GO:0003677 ... Q56215 12582174

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).