SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    355601 5hzz:D (1.801) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355602 5hzz:D (1.801) BS02 MN ? GO:0046872 ... Q9RS96 27739259
    355603 5hzz:D (1.801) BS03 MN ? GO:0046872 ... Q9RS96 27739259
    355604 5i00:A (1.49) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355605 5i00:A (1.49) BS02 AFQ 2.4.2.29 GO:0002099 ... P28720 N/A
    355606 5i01:A (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    355607 5i01:B (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    355608 5i01:C (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    355609 5i01:D (2.37) BS01 ZN 5.3.1.28 GO:0005737 ... Q5F5E3 28063198
    355610 5i02:A (1.25) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355611 5i02:A (1.25) BS02 PK2 2.4.2.29 GO:0002099 ... P28720 N/A
    355612 5i03:A (1.73) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355613 5i03:A (1.73) BS02 NEZ 2.4.2.29 GO:0002099 ... P28720 N/A
    355614 5i04:A (2.42) BS01 GLC ? GO:0005515 ... P0AEX9
    P17813
    28564608
    355615 5i04:A (2.42) BS02 GLC ? GO:0005515 ... P0AEX9
    P17813
    28564608
    355616 5i06:A (1.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355617 5i06:A (1.36) BS02 E89 2.4.2.29 GO:0002099 ... P28720 N/A
    355618 5i07:A (1.89) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355619 5i07:A (1.89) BS02 NE8 2.4.2.29 GO:0002099 ... P28720 N/A
    355620 5i07:B (1.89) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355621 5i07:B (1.89) BS02 NE8 2.4.2.29 GO:0002099 ... P28720 N/A
    355622 5i09:A (1.44) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    355623 5i09:A (1.44) BS02 1UD 2.4.2.29 GO:0002099 ... P28720 N/A
    355624 5i0a:A (1.5) BS01 CPT 3.1.-.- GO:0016539 ... P9WHJ3 N/A
    355625 5i0a:A (1.5) BS02 TCE 3.1.-.- GO:0016539 ... P9WHJ3 N/A
    355626 5i0b:A (3.09) BS01 67U 2.7.11.1 GO:0004672 ... O96013 27117431
    355627 5i0d:A (1.77) BS01 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355628 5i0d:A (1.77) BS02 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355629 5i0d:A (1.77) BS03 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355630 5i0d:A (1.77) BS04 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355631 5i0d:A (1.77) BS05 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355632 5i0d:A (1.77) BS06 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355633 5i0d:A (1.77) BS07 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355634 5i0d:A (1.77) BS08 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355635 5i0d:A (1.77) BS09 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355636 5i0d:A (1.77) BS10 MG ? GO:0003824 ... Q8Y4J2 28089449
    355637 5i0d:A (1.77) BS11 CA ? GO:0003824 ... Q8Y4J2 28089449
    355638 5i0d:A (1.77) BS12 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355639 5i0d:B (1.77) BS01 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355640 5i0d:B (1.77) BS02 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355641 5i0d:B (1.77) BS03 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355642 5i0d:B (1.77) BS04 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355643 5i0d:B (1.77) BS05 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355644 5i0d:B (1.77) BS06 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355645 5i0d:B (1.77) BS07 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355646 5i0d:B (1.77) BS08 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355647 5i0d:B (1.77) BS09 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355648 5i0d:B (1.77) BS10 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355649 5i0d:B (1.77) BS11 MG ? GO:0003824 ... Q8Y4J2 28089449
    355650 5i0d:B (1.77) BS12 CA ? GO:0003824 ... Q8Y4J2 28089449
    355651 5i0d:B (1.77) BS13 GLC ? GO:0003824 ... Q8Y4J2 28089449
    355652 5i0e:B (2.3) BS01 GLC N/A GO:0003824 ... N/A 28089449
    355653 5i0e:B (2.3) BS02 GLC N/A GO:0003824 ... N/A 28089449
    355654 5i0f:B (1.85) BS01 GLC N/A GO:0003824 ... N/A 28089449
    355655 5i0f:B (1.85) BS02 GLC N/A GO:0003824 ... N/A 28089449
    355656 5i0f:B (1.85) BS03 BGC N/A GO:0003824 ... N/A 28089449
    355657 5i0f:B (1.85) BS04 GLC N/A GO:0003824 ... N/A 28089449
    355658 5i0f:B (1.85) BS05 CA N/A GO:0003824 ... N/A 28089449
    355659 5i0f:B (1.85) BS06 CA N/A GO:0003824 ... N/A 28089449
    355660 5i0f:B (1.85) BS07 CA N/A GO:0003824 ... N/A 28089449
    355661 5i0g:B (2.15) BS01 GLC N/A GO:0003824 ... N/A 28089449
    355662 5i0g:B (2.15) BS02 GLC N/A GO:0003824 ... N/A 28089449
    355663 5i0g:B (2.15) BS03 GLC N/A GO:0003824 ... N/A 28089449
    355664 5i0h:A (1.8) BS01 ADP ? GO:0003774 ... Q9HD67 27580874
    355665 5i0h:A (1.8) BS02 MG ? GO:0003774 ... Q9HD67 27580874
    355666 5i0h:A (1.8) BS03 BEF ? GO:0003774 ... Q9HD67 27580874
    355667 5i0h:B (1.8) BS01 ADP ? GO:0003774 ... Q9HD67 27580874
    355668 5i0h:B (1.8) BS02 MG ? GO:0003774 ... Q9HD67 27580874
    355669 5i0h:B (1.8) BS03 BEF ? GO:0003774 ... Q9HD67 27580874
    355670 5i0i:A (3.15) BS01 MG ? GO:0003774 ... Q9HD67 27580874
    355671 5i0i:A (3.15) BS02 ADP ? GO:0003774 ... Q9HD67 27580874
    355672 5i0i:B (3.15) BS01 MG ? GO:0003774 ... Q9HD67 27580874
    355673 5i0i:B (3.15) BS02 ADP ? GO:0003774 ... Q9HD67 27580874
    355674 5i0j:A (1.8) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355675 5i0j:B (1.8) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355676 5i0j:C (1.8) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355677 5i0j:D (1.8) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355678 5i0k:A (3.197) BS01 COO 2.3.1.292 N/A P96202 28377293
    355679 5i0l:A (2.45) BS01 H27 3.4.24.65 GO:0004222 ... P39900 27356908 MOAD: ic50=18nM
    355680 5i0l:A (2.45) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    355681 5i0l:A (2.45) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    355682 5i0l:A (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355683 5i0l:A (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355684 5i0l:A (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355685 5i0l:A (2.45) BS07 H27 3.4.24.65 GO:0004222 ... P39900 27356908 MOAD: ic50=18nM
    355686 5i0l:B (2.45) BS01 H27 3.4.24.65 GO:0004222 ... P39900 27356908 MOAD: ic50=18nM
    355687 5i0l:B (2.45) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    355688 5i0l:B (2.45) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    355689 5i0l:B (2.45) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355690 5i0l:B (2.45) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355691 5i0l:B (2.45) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    355692 5i0m:A (2.15) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355693 5i0m:B (2.15) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355694 5i0m:C (2.15) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355695 5i0m:D (2.15) BS01 UMP ? GO:0046872 ... Q9RS96 27739259
    355696 5i0n:A (2.28) BS01 ATP 2.7.1.67
    3.2.1.17
    GO:0003796 ... D9IEF7
    Q9BTU6
    N/A
    355697 5i0n:A (2.28) BS02 ATP 2.7.1.67
    3.2.1.17
    GO:0003796 ... D9IEF7
    Q9BTU6
    N/A
    355698 5i0n:A (2.28) BS03 CA 2.7.1.67
    3.2.1.17
    GO:0003796 ... D9IEF7
    Q9BTU6
    N/A
    355699 5i0p:A (2.5) BS01 ZN ? GO:0046872 ... B1YNR3 N/A
    355700 5i0p:A (2.5) BS02 ZN ? GO:0046872 ... B1YNR3 N/A
    355701 5i0p:B (2.5) BS01 ZN ? GO:0046872 ... B1YNR3 N/A
    355702 5i0p:B (2.5) BS02 ZN ? GO:0046872 ... B1YNR3 N/A
    355703 5i0p:C (2.5) BS01 ZN ? GO:0046872 ... B1YNR3 N/A
    355704 5i0p:C (2.5) BS02 ZN ? GO:0046872 ... B1YNR3 N/A
    355705 5i0p:D (2.5) BS01 ZN ? GO:0046872 ... B1YNR3 N/A
    355706 5i0p:D (2.5) BS02 ZN ? GO:0046872 ... B1YNR3 N/A
    355707 5i0r:A (1.35) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    355708 5i0r:A (1.35) BS02 DCY 1.13.11.20 GO:0005506 ... P21816 27477048
    355709 5i0r:A (1.35) BS03 CL 1.13.11.20 GO:0005506 ... P21816 27477048
    355710 5i0s:A (1.3) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    355711 5i0s:A (1.3) BS02 THJ 1.13.11.20 GO:0005506 ... P21816 27477048
    355712 5i0t:A (1.37) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    355713 5i0t:A (1.37) BS02 THJ 1.13.11.20 GO:0005506 ... P21816 27477048
    355714 5i0u:A (1.25) BS01 FE 1.13.11.20 GO:0005506 ... P21816 27477048
    355715 5i0u:A (1.25) BS02 DCY 1.13.11.20 GO:0005506 ... P21816 27477048
    355716 5i0v:A (1.65) BS01 FE ? GO:0046872 ... A0A0H3PA01 32780051
    355717 5i0v:A (1.65) BS02 CU ? GO:0046872 ... A0A0H3PA01 32780051
    355718 5i0v:B (1.65) BS01 CU ? GO:0046872 ... A0A0H3PA01 32780051
    355719 5i0v:B (1.65) BS02 FE ? GO:0046872 ... A0A0H3PA01 32780051
    355720 5i0w:A (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    355721 5i0w:B (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    355722 5i0w:B (1.55) BS02 FE2 ? GO:0046872 ... A0A0H3PA01 32780051
    355723 5i0x:A (1.5) BS01 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    355724 5i0x:B (1.5) BS01 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    355725 5i0x:B (1.5) BS02 CU ? GO:0046872 ... A0A1S4NYE6 32780051
    355726 5i0y:A (1.4) BS01 CU ? GO:0046872 ... A0A1S4NYE7 32780051
    355727 5i0y:B (1.4) BS01 CU ? GO:0046872 ... A0A1S4NYE7 32780051
    355728 5i10:A (2.0) BS01 MG ? GO:0008168 ... Q9ALM9 N/A
    355729 5i12:A (1.59) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 27356908
    355730 5i12:A (1.59) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 27356908
    355731 5i12:A (1.59) BS03 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    355732 5i12:A (1.59) BS04 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    355733 5i12:A (1.59) BS05 CA 3.4.24.35 GO:0004222 ... P14780 27356908
    355734 5i12:A (1.59) BS06 H27 3.4.24.35 GO:0004222 ... P14780 27356908 MOAD: ic50=1200nM
    355735 5i13:A (2.151) BS01 MN 3.1.-.- GO:0003723 ... P03433 27088785
    355736 5i13:A (2.151) BS02 MN 3.1.-.- GO:0003723 ... P03433 27088785
    355737 5i13:A (2.151) BS03 4P9 3.1.-.- GO:0003723 ... P03433 27088785 BindingDB: IC50=8300nM
    355738 5i13:A (2.151) BS04 4P9 3.1.-.- GO:0003723 ... P03433 27088785 BindingDB: IC50=8300nM
    355739 5i1f:A (2.15) BS01 UPG 2.7.7.9 GO:0003983 ... A4JT02 N/A
    355740 5i1q:A (1.5) BS01 67C 2.3.1.48
    2.7.11.1
    GO:0004402 ... P21675 27219867 MOAD: Kd=12nM
    BindingDB: IC50=9900nM
    355741 5i1r:A (-1.00) BS01 ZN ? N/A P04591 26946052
    355742 5i1r:A (-1.00) BS02 ZN ? N/A P04591 26946052
    355743 5i1t:A (2.6) BS01 ZN ? GO:0030288 ... Q18CL6 27226615
    355744 5i1v:A (1.84) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355745 5i1v:B (1.84) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355746 5i1v:C (1.84) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355747 5i1v:D (1.84) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355748 5i1w:A (2.15) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355749 5i1w:A (2.15) BS02 67L ? GO:0000166 ... H8Y6P5 N/A
    355750 5i1w:B (2.15) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355751 5i1w:B (2.15) BS02 67L ? GO:0000166 ... H8Y6P5 N/A
    355752 5i1w:C (2.15) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355753 5i1w:C (2.15) BS02 67L ? GO:0000166 ... H8Y6P5 N/A
    355754 5i1w:D (2.15) BS01 FAD ? GO:0000166 ... H8Y6P5 N/A
    355755 5i1w:D (2.15) BS02 67K ? GO:0000166 ... H8Y6P5 N/A
    355756 5i1y:B (1.95) BS01 CO N/A N/A N/A N/A
    355757 5i22:A (-1.00) BS01 peptide ? N/A O00499 27268056
    355758 5i23:A (1.95) BS01 66V 2.4.1.161 GO:0003824 ... B3PEE6 27280170
    355759 5i24:A (1.85) BS01 66U 2.4.1.161 GO:0003824 ... B3PEE6 27280170
    355760 5i25:A (2.85) BS01 peptide 3.4.21.27 GO:0004252 ... P03951 27006387
    355761 5i26:A (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    355762 5i26:B (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    355763 5i26:C (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    355764 5i26:D (1.888) BS01 CU ? GO:0005507 ... P00282 27029516
    355765 5i28:A (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355766 5i28:B (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355767 5i28:C (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355768 5i28:D (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355769 5i28:E (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355770 5i28:F (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355771 5i28:G (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355772 5i28:H (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355773 5i28:I (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355774 5i28:J (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355775 5i28:K (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355776 5i28:L (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355777 5i28:M (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355778 5i28:N (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355779 5i28:O (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355780 5i28:P (1.95) BS01 CU ? GO:0005507 ... P00282 27029516
    355781 5i29:A (1.21) BS01 67B 2.3.1.48
    2.7.11.1
    GO:0004402 ... P21675 27219867 MOAD: Kd=15nM
    BindingDB: IC50=3600nM
    355782 5i29:A (1.21) BS02 CA 2.3.1.48
    2.7.11.1
    GO:0004402 ... P21675 27219867
    355783 5i2b:A (1.7) BS01 ZN 3.5.1.88 GO:0006412 ... B1FPK4 N/A
    355784 5i2b:A (1.7) BS02 BB2 3.5.1.88 GO:0006412 ... B1FPK4 N/A
    355785 5i2c:A (1.801) BS01 ARG ? GO:0005515 ... Q8WTX7 27487210
    355786 5i2c:B (1.801) BS01 ARG ? GO:0005515 ... Q8WTX7 27487210
    355787 5i2c:C (1.801) BS01 ARG ? GO:0005515 ... Q8WTX7 27487210
    355788 5i2c:D (1.801) BS01 ARG ? GO:0005515 ... Q8WTX7 27487210
    355789 5i2d:C (4.405) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27284196
    355790 5i2d:C (4.405) BS02 dna 2.7.7.6 GO:0000428 ... Q8RQE9 27284196
    355791 5i2d:C (4.405) BS03 rna 2.7.7.6 GO:0000428 ... Q8RQE9 27284196
    355792 5i2d:D (4.405) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    355793 5i2d:D (4.405) BS02 dna 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    355794 5i2d:D (4.405) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    355795 5i2d:D (4.405) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    355796 5i2d:D (4.405) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 27284196
    355797 5i2d:F (4.405) BS01 dna ? GO:0003677 ... Q5SKW1 27284196
    355798 5i2d:F (4.405) BS02 dna ? GO:0003677 ... Q5SKW1 27284196
    355799 5i2d:G (4.405) BS01 dna ? GO:0003677 ... Q53W63 27284196
    355800 5i2d:G (4.405) BS02 dna ? GO:0003677 ... Q53W63 27284196

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).