SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    356001 5i43:D (1.95) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356002 5i43:D (1.95) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356003 5i44:A (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356004 5i44:A (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356005 5i44:B (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356006 5i44:B (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356007 5i44:D (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356008 5i44:D (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356009 5i44:D (2.621) BS03 dna ? GO:0003677 ... P45870 27085804
    356010 5i44:E (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356011 5i44:E (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356012 5i44:F (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356013 5i44:F (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356014 5i44:G (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356015 5i44:G (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356016 5i44:H (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356017 5i44:H (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356018 5i44:I (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356019 5i44:I (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356020 5i44:J (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356021 5i44:J (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356022 5i44:K (2.621) BS01 dna ? GO:0003677 ... P45870 27085804
    356023 5i44:K (2.621) BS02 dna ? GO:0003677 ... P45870 27085804
    356024 5i46:H (2.06) BS01 67O 3.4.21.21 GO:0004252 ... P08709 27015008
    356025 5i46:H (2.06) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27015008
    356026 5i48:A (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356027 5i48:B (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356028 5i48:C (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356029 5i48:D (1.5) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356030 5i49:A (1.8) BS01 ZN 2.7.7.52 N/A Q8WQX5 27744351
    356031 5i49:A (1.8) BS02 2KH 2.7.7.52 N/A Q8WQX5 27744351
    356032 5i4a:A (1.949) BS01 rna 3.1.24.- GO:0003676 ... H2J4R4 27035975
    356033 5i4a:C (1.949) BS01 rna 3.1.24.- GO:0003676 ... H2J4R4 27035975
    356034 5i4b:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356035 5i4b:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356036 5i4b:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P06608 27354283
    356037 5i4d:A (1.75) BS01 GAL ? GO:0005576 ... Q2G0X7 N/A
    356038 5i4d:A (1.75) BS02 SIA ? GO:0005576 ... Q2G0X7 N/A
    356039 5i4d:A (1.75) BS03 FUC ? GO:0005576 ... Q2G0X7 N/A
    356040 5i4d:B (1.75) BS01 SIA ? GO:0005576 ... Q2G0X7 N/A
    356041 5i4d:B (1.75) BS02 FUC ? GO:0005576 ... Q2G0X7 N/A
    356042 5i4e:A (2.25) BS01 AOV ? GO:0003774 ... P05095
    Q7Z406
    29256864
    356043 5i4e:A (2.25) BS02 MG ? GO:0003774 ... P05095
    Q7Z406
    29256864
    356044 5i4f:A (1.549) BS01 MAN N/A N/A N/A N/A
    356045 5i4j:A (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    356046 5i4j:B (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    356047 5i4j:C (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    356048 5i4j:D (2.394) BS01 ZN ? GO:0008199 ... B2J981 N/A
    356049 5i4k:A (1.79) BS01 MN ? GO:0005886 ... Q8Y653 N/A
    356050 5i4k:A (1.79) BS02 MN ? GO:0005886 ... Q8Y653 N/A
    356051 5i4l:C0 (3.1) BS01 rna ? GO:0000054 ... Q08745 27296282
    356052 5i4l:C1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 27296282
    356053 5i4l:C2 (3.1) BS01 rna ? GO:0003735 ... P48589 27296282
    356054 5i4l:C3 (3.1) BS01 rna ? GO:0000462 ... P05756 27296282
    356055 5i4l:C3 (3.1) BS02 rna ? GO:0000462 ... P05756 27296282
    356056 5i4l:C3 (3.1) BS03 OHX ? GO:0000462 ... P05756 27296282
    356057 5i4l:C4 (3.1) BS01 rna ? GO:0000028 ... P39516 27296282
    356058 5i4l:C5 (3.1) BS01 rna ? GO:0000028 ... Q01855 27296282
    356059 5i4l:C5 (3.1) BS02 rna ? GO:0000028 ... Q01855 27296282
    356060 5i4l:C5 (3.1) BS03 OHX ? GO:0000028 ... Q01855 27296282
    356061 5i4l:C6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 27296282
    356062 5i4l:C7 (3.1) BS01 rna ? GO:0000028 ... P02407 27296282
    356063 5i4l:C8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 27296282
    356064 5i4l:C8 (3.1) BS02 MG ? GO:0000054 ... P0CX55 27296282
    356065 5i4l:C9 (3.1) BS01 rna ? GO:0000028 ... P07280 27296282
    356066 5i4l:D0 (3.1) BS01 rna ? GO:0000462 ... P38701 27296282
    356067 5i4l:D2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 27296282
    356068 5i4l:D3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 27296282
    356069 5i4l:D4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 27296282
    356070 5i4l:D5 (3.1) BS01 rna ? N/A Q3E792 27296282
    356071 5i4l:D6 (3.1) BS01 rna ? GO:0003735 ... P39939 27296282
    356072 5i4l:D6 (3.1) BS02 ZN ? GO:0003735 ... P39939 27296282
    356073 5i4l:D7 (3.1) BS01 rna ? GO:0000028 ... P35997 27296282
    356074 5i4l:D7 (3.1) BS02 ZN ? GO:0000028 ... P35997 27296282
    356075 5i4l:D8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 27296282
    356076 5i4l:D9 (3.1) BS01 rna ? GO:0002181 ... P41057 27296282
    356077 5i4l:D9 (3.1) BS02 ZN ? GO:0002181 ... P41057 27296282
    356078 5i4l:E0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 27296282
    356079 5i4l:E1 (3.1) BS01 rna ? GO:0003735 ... P05759 27296282
    356080 5i4l:L2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 27296282
    356081 5i4l:L2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 27296282
    356082 5i4l:L2 (3.1) BS03 MG ? GO:0002181 ... P0CX45 27296282
    356083 5i4l:L3 (3.1) BS01 rna ? GO:0000027 ... P14126 27296282
    356084 5i4l:L3 (3.1) BS02 OHX ? GO:0000027 ... P14126 27296282
    356085 5i4l:L4 (3.1) BS01 rna ? GO:0002181 ... P10664 27296282
    356086 5i4l:L4 (3.1) BS02 rna ? GO:0002181 ... P10664 27296282
    356087 5i4l:L4 (3.1) BS03 OHX ? GO:0002181 ... P10664 27296282
    356088 5i4l:L5 (3.1) BS01 rna ? GO:0000027 ... P26321 27296282
    356089 5i4l:L5 (3.1) BS02 rna ? GO:0000027 ... P26321 27296282
    356090 5i4l:L6 (3.1) BS01 rna ? GO:0000027 ... Q02326 27296282
    356091 5i4l:L7 (3.1) BS01 rna ? GO:0000463 ... P05737 27296282
    356092 5i4l:L7 (3.1) BS02 rna ? GO:0000463 ... P05737 27296282
    356093 5i4l:L8 (3.1) BS01 rna ? GO:0000470 ... P17076 27296282
    356094 5i4l:L8 (3.1) BS02 rna ? GO:0000470 ... P17076 27296282
    356095 5i4l:L9 (3.1) BS01 rna ? GO:0002181 ... P05738 27296282
    356096 5i4l:M0 (3.1) BS01 rna ? GO:0000027 ... P41805 27296282
    356097 5i4l:M0 (3.1) BS02 rna ? GO:0000027 ... P41805 27296282
    356098 5i4l:M0 (3.1) BS03 MG ? GO:0000027 ... P41805 27296282
    356099 5i4l:M1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 27296282
    356100 5i4l:M1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 27296282
    356101 5i4l:M3 (3.1) BS01 rna ? GO:0002181 ... Q12690 27296282
    356102 5i4l:M3 (3.1) BS02 rna ? GO:0002181 ... Q12690 27296282
    356103 5i4l:M4 (3.1) BS01 rna ? GO:0000027 ... P36105 27296282
    356104 5i4l:M5 (3.1) BS01 rna ? GO:0002181 ... P05748 27296282
    356105 5i4l:M5 (3.1) BS02 rna ? GO:0002181 ... P05748 27296282
    356106 5i4l:M5 (3.1) BS03 OHX ? GO:0002181 ... P05748 27296282
    356107 5i4l:M6 (3.1) BS01 rna ? GO:0000470 ... P26784 27296282
    356108 5i4l:M7 (3.1) BS01 rna ? GO:0000448 ... P05740 27296282
    356109 5i4l:M7 (3.1) BS02 rna ? GO:0000448 ... P05740 27296282
    356110 5i4l:M7 (3.1) BS03 MG ? GO:0000448 ... P05740 27296282
    356111 5i4l:M8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 27296282
    356112 5i4l:M9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 27296282
    356113 5i4l:M9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 27296282
    356114 5i4l:M9 (3.1) BS03 MG ? GO:0002181 ... P0CX82 27296282
    356115 5i4l:M9 (3.1) BS04 OHX ? GO:0002181 ... P0CX82 27296282
    356116 5i4l:N0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 27296282
    356117 5i4l:N0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 27296282
    356118 5i4l:N1 (3.1) BS01 rna ? GO:0002181 ... Q02753 27296282
    356119 5i4l:N1 (3.1) BS02 rna ? GO:0002181 ... Q02753 27296282
    356120 5i4l:N1 (3.1) BS03 OHX ? GO:0002181 ... Q02753 27296282
    356121 5i4l:N2 (3.1) BS01 rna ? GO:0003735 ... P05749 27296282
    356122 5i4l:N3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 27296282
    356123 5i4l:N3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 27296282
    356124 5i4l:N4 (3.1) BS01 rna ? GO:0003735 ... P04449 27296282
    356125 5i4l:N4 (3.1) BS02 rna ? GO:0003735 ... P04449 27296282
    356126 5i4l:N5 (3.1) BS01 rna ? GO:0003735 ... P04456 27296282
    356127 5i4l:N5 (3.1) BS02 rna ? GO:0003735 ... P04456 27296282
    356128 5i4l:N6 (3.1) BS01 rna ? GO:0002181 ... P05743 27296282
    356129 5i4l:N6 (3.1) BS02 rna ? GO:0002181 ... P05743 27296282
    356130 5i4l:N7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 27296282
    356131 5i4l:N7 (3.1) BS02 OHX ? GO:0002181 ... P0C2H6 27296282
    356132 5i4l:N8 (3.1) BS01 rna ? GO:0002181 ... P02406 27296282
    356133 5i4l:N9 (3.1) BS01 rna ? GO:0002181 ... P05747 27296282
    356134 5i4l:N9 (3.1) BS02 OHX ? GO:0002181 ... P05747 27296282
    356135 5i4l:O0 (3.1) BS01 rna ? GO:0002181 ... P14120 27296282
    356136 5i4l:O1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 27296282
    356137 5i4l:O1 (3.1) BS02 OHX ? GO:0002181 ... P0C2H8 27296282
    356138 5i4l:O2 (3.1) BS01 rna ? GO:0002181 ... P38061 27296282
    356139 5i4l:O3 (3.1) BS01 rna ? GO:0000027 ... P05744 27296282
    356140 5i4l:O3 (3.1) BS02 OHX ? GO:0000027 ... P05744 27296282
    356141 5i4l:O4 (3.1) BS01 rna ? GO:0002181 ... P87262 27296282
    356142 5i4l:O4 (3.1) BS02 MG ? GO:0002181 ... P87262 27296282
    356143 5i4l:O5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 27296282
    356144 5i4l:O5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 27296282
    356145 5i4l:O6 (3.1) BS01 rna ? GO:0002181 ... P05745 27296282
    356146 5i4l:O7 (3.1) BS01 rna ? GO:0000448 ... P49166 27296282
    356147 5i4l:O7 (3.1) BS02 rna ? GO:0000448 ... P49166 27296282
    356148 5i4l:O7 (3.1) BS03 OHX ? GO:0000448 ... P49166 27296282
    356149 5i4l:O7 (3.1) BS04 OHX ? GO:0000448 ... P49166 27296282
    356150 5i4l:O7 (3.1) BS05 ZN ? GO:0000448 ... P49166 27296282
    356151 5i4l:O8 (3.1) BS01 rna ? GO:0002181 ... P49167 27296282
    356152 5i4l:O9 (3.1) BS01 rna ? GO:0002181 ... P04650 27296282
    356153 5i4l:O9 (3.1) BS02 rna ? GO:0002181 ... P04650 27296282
    356154 5i4l:Q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 27296282
    356155 5i4l:Q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 27296282
    356156 5i4l:Q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 27296282
    356157 5i4l:Q2 (3.1) BS02 ZN ? GO:0002181 ... P0CX27 27296282
    356158 5i4l:Q2 (3.1) BS03 OHX ? GO:0002181 ... P0CX27 27296282
    356159 5i4l:Q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 27296282
    356160 5i4l:Q3 (3.1) BS02 ZN ? GO:0002181 ... P0CX25 27296282
    356161 5i4l:S0 (3.1) BS01 rna ? GO:0003735 ... P32905 27296282
    356162 5i4l:S1 (3.1) BS01 rna ? GO:0003735 ... P33442 27296282
    356163 5i4l:S1 (3.1) BS02 OHX ? GO:0003735 ... P33442 27296282
    356164 5i4l:S2 (3.1) BS01 rna ? GO:0003723 ... P25443 27296282
    356165 5i4l:S3 (3.1) BS01 rna ? GO:0000054 ... P05750 27296282
    356166 5i4l:S4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 27296282
    356167 5i4l:S5 (3.1) BS01 rna ? GO:0000028 ... P26783 27296282
    356168 5i4l:S6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 27296282
    356169 5i4l:S7 (3.1) BS01 rna ? GO:0002181 ... P26786 27296282
    356170 5i4l:S8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 27296282
    356171 5i4l:S8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 27296282
    356172 5i4l:S8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 27296282
    356173 5i4l:S9 (3.1) BS01 rna ? GO:0000462 ... O13516 27296282
    356174 5i4l:S9 (3.1) BS02 OHX ? GO:0000462 ... O13516 27296282
    356175 5i4l:SM (3.1) BS01 rna ? N/A P39015 27296282
    356176 5i4l:SM (3.1) BS02 rna ? N/A P39015 27296282
    356177 5i4l:SR (3.1) BS01 rna ? GO:0001965 ... P38011 27296282
    356178 5i4l:SR (3.1) BS02 OHX ? GO:0001965 ... P38011 27296282
    356179 5i4l:c0 (3.1) BS01 rna ? GO:0000054 ... Q08745 27296282
    356180 5i4l:c1 (3.1) BS01 rna ? GO:0000028 ... P0CX47 27296282
    356181 5i4l:c2 (3.1) BS01 rna ? GO:0003735 ... P48589 27296282
    356182 5i4l:c3 (3.1) BS01 rna ? GO:0000462 ... P05756 27296282
    356183 5i4l:c3 (3.1) BS02 rna ? GO:0000462 ... P05756 27296282
    356184 5i4l:c4 (3.1) BS01 rna ? GO:0000028 ... P39516 27296282
    356185 5i4l:c5 (3.1) BS01 rna ? GO:0000028 ... Q01855 27296282
    356186 5i4l:c5 (3.1) BS02 OHX ? GO:0000028 ... Q01855 27296282
    356187 5i4l:c6 (3.1) BS01 rna ? GO:0000462 ... P0CX51 27296282
    356188 5i4l:c7 (3.1) BS01 rna ? GO:0000028 ... P02407 27296282
    356189 5i4l:c8 (3.1) BS01 rna ? GO:0000054 ... P0CX55 27296282
    356190 5i4l:c9 (3.1) BS01 rna ? GO:0000028 ... P07280 27296282
    356191 5i4l:c9 (3.1) BS02 MG ? GO:0000028 ... P07280 27296282
    356192 5i4l:d0 (3.1) BS01 rna ? GO:0000462 ... P38701 27296282
    356193 5i4l:d2 (3.1) BS01 rna ? GO:0002181 ... P0C0W1 27296282
    356194 5i4l:d3 (3.1) BS01 rna ? GO:0000462 ... P0CX29 27296282
    356195 5i4l:d4 (3.1) BS01 rna ? GO:0000462 ... P0CX31 27296282
    356196 5i4l:d5 (3.1) BS01 rna ? N/A Q3E792 27296282
    356197 5i4l:d6 (3.1) BS01 rna ? GO:0003735 ... P39939 27296282
    356198 5i4l:d6 (3.1) BS02 ZN ? GO:0003735 ... P39939 27296282
    356199 5i4l:d7 (3.1) BS01 rna ? GO:0000028 ... P35997 27296282
    356200 5i4l:d8 (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 27296282

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).