SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    356201 5i4l:d9 (3.1) BS01 rna ? GO:0002181 ... P41057 27296282
    356202 5i4l:d9 (3.1) BS02 ZN ? GO:0002181 ... P41057 27296282
    356203 5i4l:e0 (3.1) BS01 rna ? GO:0002181 ... P0CX33 27296282
    356204 5i4l:e1 (3.1) BS01 rna ? GO:0003735 ... P05759 27296282
    356205 5i4l:e1 (3.1) BS02 ZN ? GO:0003735 ... P05759 27296282
    356206 5i4l:l2 (3.1) BS01 rna ? GO:0002181 ... P0CX45 27296282
    356207 5i4l:l2 (3.1) BS02 rna ? GO:0002181 ... P0CX45 27296282
    356208 5i4l:l3 (3.1) BS01 rna ? GO:0000027 ... P14126 27296282
    356209 5i4l:l3 (3.1) BS02 OHX ? GO:0000027 ... P14126 27296282
    356210 5i4l:l4 (3.1) BS01 rna ? GO:0002181 ... P10664 27296282
    356211 5i4l:l4 (3.1) BS02 rna ? GO:0002181 ... P10664 27296282
    356212 5i4l:l4 (3.1) BS03 OHX ? GO:0002181 ... P10664 27296282
    356213 5i4l:l5 (3.1) BS01 rna ? GO:0000027 ... P26321 27296282
    356214 5i4l:l5 (3.1) BS02 rna ? GO:0000027 ... P26321 27296282
    356215 5i4l:l5 (3.1) BS03 OHX ? GO:0000027 ... P26321 27296282
    356216 5i4l:l5 (3.1) BS04 OHX ? GO:0000027 ... P26321 27296282
    356217 5i4l:l6 (3.1) BS01 rna ? GO:0000027 ... Q02326 27296282
    356218 5i4l:l7 (3.1) BS01 rna ? GO:0000463 ... P05737 27296282
    356219 5i4l:l7 (3.1) BS02 rna ? GO:0000463 ... P05737 27296282
    356220 5i4l:l7 (3.1) BS03 OHX ? GO:0000463 ... P05737 27296282
    356221 5i4l:l8 (3.1) BS01 rna ? GO:0000470 ... P17076 27296282
    356222 5i4l:l8 (3.1) BS02 rna ? GO:0000470 ... P17076 27296282
    356223 5i4l:l9 (3.1) BS01 rna ? GO:0002181 ... P05738 27296282
    356224 5i4l:l9 (3.1) BS02 OHX ? GO:0002181 ... P05738 27296282
    356225 5i4l:m0 (3.1) BS01 rna ? GO:0000027 ... P41805 27296282
    356226 5i4l:m0 (3.1) BS02 rna ? GO:0000027 ... P41805 27296282
    356227 5i4l:m0 (3.1) BS03 OHX ? GO:0000027 ... P41805 27296282
    356228 5i4l:m0 (3.1) BS04 OHX ? GO:0000027 ... P41805 27296282
    356229 5i4l:m1 (3.1) BS01 rna ? GO:0000027 ... Q3E757 27296282
    356230 5i4l:m1 (3.1) BS02 rna ? GO:0000027 ... Q3E757 27296282
    356231 5i4l:m2 (3.1) BS01 rna N/A N/A N/A 27296282
    356232 5i4l:m3 (3.1) BS01 rna ? GO:0002181 ... Q12690 27296282
    356233 5i4l:m3 (3.1) BS02 rna ? GO:0002181 ... Q12690 27296282
    356234 5i4l:m4 (3.1) BS01 rna ? GO:0000027 ... P36105 27296282
    356235 5i4l:m5 (3.1) BS01 rna ? GO:0002181 ... P05748 27296282
    356236 5i4l:m5 (3.1) BS02 rna ? GO:0002181 ... P05748 27296282
    356237 5i4l:m5 (3.1) BS03 OHX ? GO:0002181 ... P05748 27296282
    356238 5i4l:m5 (3.1) BS04 MG ? GO:0002181 ... P05748 27296282
    356239 5i4l:m6 (3.1) BS01 rna ? GO:0000470 ... P26784 27296282
    356240 5i4l:m7 (3.1) BS01 rna ? GO:0000448 ... P05740 27296282
    356241 5i4l:m7 (3.1) BS02 rna ? GO:0000448 ... P05740 27296282
    356242 5i4l:m7 (3.1) BS03 MG ? GO:0000448 ... P05740 27296282
    356243 5i4l:m8 (3.1) BS01 rna ? GO:0002181 ... P0CX49 27296282
    356244 5i4l:m9 (3.1) BS01 rna ? GO:0002181 ... P0CX82 27296282
    356245 5i4l:m9 (3.1) BS02 rna ? GO:0002181 ... P0CX82 27296282
    356246 5i4l:n0 (3.1) BS01 rna ? GO:0002181 ... P0CX23 27296282
    356247 5i4l:n0 (3.1) BS02 rna ? GO:0002181 ... P0CX23 27296282
    356248 5i4l:n1 (3.1) BS01 rna ? GO:0002181 ... Q02753 27296282
    356249 5i4l:n1 (3.1) BS02 rna ? GO:0002181 ... Q02753 27296282
    356250 5i4l:n1 (3.1) BS03 MG ? GO:0002181 ... Q02753 27296282
    356251 5i4l:n1 (3.1) BS04 OHX ? GO:0002181 ... Q02753 27296282
    356252 5i4l:n2 (3.1) BS01 rna ? GO:0003735 ... P05749 27296282
    356253 5i4l:n3 (3.1) BS01 rna ? GO:0002181 ... P0CX41 27296282
    356254 5i4l:n3 (3.1) BS02 rna ? GO:0002181 ... P0CX41 27296282
    356255 5i4l:n3 (3.1) BS03 OHX ? GO:0002181 ... P0CX41 27296282
    356256 5i4l:n4 (3.1) BS01 rna ? GO:0003735 ... P04449 27296282
    356257 5i4l:n4 (3.1) BS02 rna ? GO:0003735 ... P04449 27296282
    356258 5i4l:n5 (3.1) BS01 rna ? GO:0003735 ... P04456 27296282
    356259 5i4l:n5 (3.1) BS02 rna ? GO:0003735 ... P04456 27296282
    356260 5i4l:n6 (3.1) BS01 rna ? GO:0002181 ... P05743 27296282
    356261 5i4l:n6 (3.1) BS02 rna ? GO:0002181 ... P05743 27296282
    356262 5i4l:n7 (3.1) BS01 rna ? GO:0002181 ... P0C2H6 27296282
    356263 5i4l:n8 (3.1) BS01 rna ? GO:0002181 ... P02406 27296282
    356264 5i4l:n9 (3.1) BS01 rna ? GO:0002181 ... P05747 27296282
    356265 5i4l:n9 (3.1) BS02 OHX ? GO:0002181 ... P05747 27296282
    356266 5i4l:o0 (3.1) BS01 rna ? GO:0002181 ... P14120 27296282
    356267 5i4l:o1 (3.1) BS01 rna ? GO:0002181 ... P0C2H8 27296282
    356268 5i4l:o2 (3.1) BS01 rna ? GO:0002181 ... P38061 27296282
    356269 5i4l:o3 (3.1) BS01 rna ? GO:0000027 ... P05744 27296282
    356270 5i4l:o3 (3.1) BS02 OHX ? GO:0000027 ... P05744 27296282
    356271 5i4l:o4 (3.1) BS01 rna ? GO:0002181 ... P87262 27296282
    356272 5i4l:o4 (3.1) BS02 MG ? GO:0002181 ... P87262 27296282
    356273 5i4l:o5 (3.1) BS01 rna ? GO:0000463 ... P0CX84 27296282
    356274 5i4l:o5 (3.1) BS02 rna ? GO:0000463 ... P0CX84 27296282
    356275 5i4l:o6 (3.1) BS01 rna ? GO:0002181 ... P05745 27296282
    356276 5i4l:o7 (3.1) BS01 rna ? GO:0000448 ... P49166 27296282
    356277 5i4l:o7 (3.1) BS02 rna ? GO:0000448 ... P49166 27296282
    356278 5i4l:o7 (3.1) BS03 OHX ? GO:0000448 ... P49166 27296282
    356279 5i4l:o7 (3.1) BS04 ZN ? GO:0000448 ... P49166 27296282
    356280 5i4l:o7 (3.1) BS05 OHX ? GO:0000448 ... P49166 27296282
    356281 5i4l:o8 (3.1) BS01 rna ? GO:0002181 ... P49167 27296282
    356282 5i4l:o9 (3.1) BS01 rna ? GO:0002181 ... P04650 27296282
    356283 5i4l:o9 (3.1) BS02 rna ? GO:0002181 ... P04650 27296282
    356284 5i4l:p0 (3.1) BS01 rna ? GO:0000027 ... P05317 27296282
    356285 5i4l:q0 (3.1) BS01 rna ? GO:0003735 ... P0CH08 27296282
    356286 5i4l:q0 (3.1) BS02 ZN ? GO:0003735 ... P0CH08 27296282
    356287 5i4l:q2 (3.1) BS01 rna ? GO:0002181 ... P0CX27 27296282
    356288 5i4l:q2 (3.1) BS02 OHX ? GO:0002181 ... P0CX27 27296282
    356289 5i4l:q3 (3.1) BS01 rna ? GO:0002181 ... P0CX25 27296282
    356290 5i4l:q3 (3.1) BS02 rna ? GO:0002181 ... P0CX25 27296282
    356291 5i4l:q3 (3.1) BS03 ZN ? GO:0002181 ... P0CX25 27296282
    356292 5i4l:s0 (3.1) BS01 rna ? GO:0003735 ... P32905 27296282
    356293 5i4l:s1 (3.1) BS01 rna ? GO:0003735 ... P33442 27296282
    356294 5i4l:s1 (3.1) BS02 OHX ? GO:0003735 ... P33442 27296282
    356295 5i4l:s2 (3.1) BS01 rna ? GO:0003723 ... P25443 27296282
    356296 5i4l:s3 (3.1) BS01 rna ? GO:0000054 ... P05750 27296282
    356297 5i4l:s4 (3.1) BS01 rna ? GO:0002181 ... P0CX35 27296282
    356298 5i4l:s5 (3.1) BS01 rna ? GO:0000028 ... P26783 27296282
    356299 5i4l:s6 (3.1) BS01 rna ? GO:0000462 ... P0CX37 27296282
    356300 5i4l:s7 (3.1) BS01 rna ? GO:0002181 ... P26786 27296282
    356301 5i4l:s8 (3.1) BS01 rna ? GO:0000462 ... P0CX39 27296282
    356302 5i4l:s8 (3.1) BS02 rna ? GO:0000462 ... P0CX39 27296282
    356303 5i4l:s8 (3.1) BS03 OHX ? GO:0000462 ... P0CX39 27296282
    356304 5i4l:s9 (3.1) BS01 rna ? GO:0000462 ... O13516 27296282
    356305 5i4l:sM (3.1) BS01 rna ? N/A P39015 27296282
    356306 5i4l:sM (3.1) BS02 rna ? N/A P39015 27296282
    356307 5i4l:sM (3.1) BS03 MG ? N/A P39015 27296282
    356308 5i4l:sR (3.1) BS01 rna ? GO:0001965 ... P38011 27296282
    356309 5i4l:sR (3.1) BS02 OHX ? GO:0001965 ... P38011 27296282
    356310 5i4m:A (1.8) BS01 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    356311 5i4m:A (1.8) BS02 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    356312 5i4m:B (1.8) BS01 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    356313 5i4m:B (1.8) BS02 ZN 3.5.1.87 GO:0016787 ... A4JQA0 N/A
    356314 5i4n:A (1.54) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 27029346 BindingDB: Kd=1300nM
    356315 5i4o:A (2.05) BS01 V28 3.4.24.65 GO:0004222 ... P39900 27356908
    356316 5i4o:A (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356317 5i4o:A (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356318 5i4o:A (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356319 5i4o:A (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356320 5i4o:A (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356321 5i4o:B (2.05) BS01 V28 3.4.24.65 GO:0004222 ... P39900 27356908
    356322 5i4o:B (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356323 5i4o:B (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356324 5i4o:B (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356325 5i4o:B (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356326 5i4o:B (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356327 5i4o:C (2.05) BS01 V28 3.4.24.65 GO:0004222 ... P39900 27356908
    356328 5i4o:C (2.05) BS02 V28 3.4.24.65 GO:0004222 ... P39900 27356908
    356329 5i4o:C (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356330 5i4o:C (2.05) BS04 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356331 5i4o:C (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356332 5i4o:C (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356333 5i4o:C (2.05) BS07 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356334 5i4o:D (2.05) BS01 V28 3.4.24.65 GO:0004222 ... P39900 27356908
    356335 5i4o:D (2.05) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356336 5i4o:D (2.05) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 27356908
    356337 5i4o:D (2.05) BS04 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356338 5i4o:D (2.05) BS05 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356339 5i4o:D (2.05) BS06 CA 3.4.24.65 GO:0004222 ... P39900 27356908
    356340 5i4r:C (3.3) BS01 GDP ? GO:0003924 ... P0CE48 28973472
    356341 5i4r:D (3.3) BS01 GDP ? GO:0003746 ... P0CE47 28973472
    356342 5i4r:G (3.3) BS01 GDP ? GO:0003924 ... P0CE48 28973472
    356343 5i4r:H (3.3) BS01 GDP ? GO:0003746 ... P0CE47 28973472
    356344 5i4u:A (2.372) BS01 67T 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 N/A
    356345 5i4v:A (2.61) BS01 67S ? GO:0003677 ... P55055
    Q15596
    26990539
    356346 5i4v:E (2.61) BS01 67S ? GO:0003677 ... P55055
    Q15596
    26990539
    356347 5i4x:A (1.607) BS01 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356348 5i4x:A (1.607) BS02 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356349 5i4x:A (1.607) BS03 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356350 5i4x:A (1.607) BS04 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356351 5i4x:A (1.607) BS05 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356352 5i4x:A (1.607) BS06 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356353 5i50:A (2.701) BS01 dna ? GO:0003700 ... P01106 27748763
    356354 5i50:A (2.701) BS02 dna ? GO:0003700 ... P01106 27748763
    356355 5i50:B (2.701) BS01 dna ? GO:0003700 ... P01106 27748763
    356356 5i50:B (2.701) BS02 dna ? GO:0003700 ... P01106 27748763
    356357 5i51:A (1.54) BS01 TPP 2.2.1.1 GO:0004802 ... P34736 27578891
    356358 5i51:A (1.54) BS02 F6R 2.2.1.1 GO:0004802 ... P34736 27578891
    356359 5i51:A (1.54) BS03 CA 2.2.1.1 GO:0004802 ... P34736 27578891
    356360 5i53:A (1.608) BS01 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356361 5i53:A (1.608) BS02 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356362 5i53:A (1.608) BS03 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356363 5i53:A (1.608) BS04 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356364 5i53:A (1.608) BS05 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356365 5i53:A (1.608) BS06 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356366 5i53:A (1.608) BS07 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356367 5i53:A (1.608) BS08 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356368 5i53:A (1.608) BS09 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356369 5i54:A (1.608) BS01 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356370 5i54:A (1.608) BS02 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356371 5i54:A (1.608) BS03 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356372 5i54:A (1.608) BS04 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356373 5i54:A (1.608) BS05 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356374 5i54:A (1.608) BS06 URE 3.2.1.17 GO:0003796 ... P00698 27573790
    356375 5i56:A (2.28) BS01 GLY ? GO:0015276 ... P35439 27618671
    356376 5i56:A (2.28) BS02 67P ? GO:0015276 ... P35439 27618671
    356377 5i56:B (2.28) BS01 GLU ? GO:0015276 ... Q00959 27618671
    356378 5i56:B (2.28) BS02 67P ? GO:0015276 ... Q00959 27618671 MOAD: ic50=1530nM
    BindingDB: IC50=170nM
    356379 5i57:A (1.7) BS01 GLY ? GO:0015276 ... P35439 27618671
    356380 5i57:B (1.7) BS01 GLU ? GO:0015276 ... Q00959 27618671
    356381 5i58:A (2.52) BS01 GLY ? GO:0015276 ... P35439 27618671
    356382 5i58:A (2.52) BS02 67R ? GO:0015276 ... P35439 27618671
    356383 5i58:B (2.52) BS01 GLU ? GO:0015276 ... Q00959 27618671
    356384 5i58:B (2.52) BS02 67R ? GO:0015276 ... Q00959 27618671
    356385 5i59:A (2.25) BS01 GLY ? GO:0015276 ... P35439 27618671
    356386 5i59:A (2.25) BS02 67Q ? GO:0015276 ... P35439 27618671
    356387 5i59:B (2.25) BS01 GLU ? GO:0015276 ... Q00959 27618671
    356388 5i59:B (2.25) BS02 67Q ? GO:0015276 ... Q00959 27618671 MOAD: ic50=641nM
    356389 5i5e:A (1.62) BS01 TPP 2.2.1.1 GO:0004802 ... P34736 27578891
    356390 5i5e:A (1.62) BS02 5SP 2.2.1.1 GO:0004802 ... P34736 27578891
    356391 5i5e:A (1.62) BS03 CA 2.2.1.1 GO:0004802 ... P34736 27578891
    356392 5i5g:A (1.95) BS01 POP 2.2.1.1 GO:0004802 ... P34736 27578891
    356393 5i5l:A (2.7) BS01 BLA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    356394 5i5l:A (2.7) BS02 CA 2.7.13.3 GO:0006355 ... Q7CY45 27466363
    356395 5i5m:A (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    356396 5i5m:A (1.37) BS02 BU3 1.7.2.4 GO:0004129 ... Q12M27 26885878
    356397 5i5m:A (1.37) BS03 BU3 1.7.2.4 GO:0004129 ... Q12M27 26885878
    356398 5i5m:A (1.37) BS04 BU3 1.7.2.4 GO:0004129 ... Q12M27 26885878
    356399 5i5m:B (1.37) BS01 CA 1.7.2.4 GO:0004129 ... Q12M27 26885878
    356400 5i5m:B (1.37) BS02 BU3 1.7.2.4 GO:0004129 ... Q12M27 26885878

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).