SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    357001 5ib8:6E (3.13) BS01 rna ? GO:0000049 ... P17291 27174928
    357002 5ib8:6E (3.13) BS02 rna ? GO:0000049 ... P17291 27174928
    357003 5ib8:6I (3.13) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    357004 5ib8:6I (3.13) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    357005 5ib8:71 (3.13) BS01 rna ? GO:0000049 ... P27150 27174928
    357006 5ib8:71 (3.13) BS02 rna ? GO:0000049 ... P27150 27174928
    357007 5ib8:72 (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    357008 5ib8:75 (3.13) BS01 rna ? GO:0003735 ... P60490 27174928
    357009 5ib8:75 (3.13) BS02 rna ? GO:0003735 ... P60490 27174928
    357010 5ib8:78 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    357011 5ib8:7A (3.13) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    357012 5ib8:7E (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    357013 5ib8:7I (3.13) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    357014 5ib8:82 (3.13) BS01 rna ? GO:0000049 ... P80374 27174928
    357015 5ib8:85 (3.13) BS01 rna ? GO:0000027 ... P60491 27174928
    357016 5ib8:88 (3.13) BS01 rna ? GO:0000049 ... P60489 27174928
    357017 5ib8:88 (3.13) BS02 rna ? GO:0000049 ... P60489 27174928
    357018 5ib8:88 (3.13) BS03 rna ? GO:0000049 ... P60489 27174928
    357019 5ib8:8A (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    357020 5ib8:8E (3.13) BS01 rna ? GO:0000049 ... P80374 27174928
    357021 5ib8:8E (3.13) BS02 rna ? GO:0000049 ... P80374 27174928
    357022 5ib8:8I (3.13) BS01 rna N/A GO:0003735 ... N/A 27174928
    357023 5ib8:95 (3.13) BS01 rna ? GO:0003723 ... P60492 27174928
    357024 5ib8:98 (3.13) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    357025 5ib8:9A (3.13) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    357026 5ib8:9I (3.13) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    357027 5ib8:A5 (3.13) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    357028 5ib8:A8 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    357029 5ib8:A8 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    357030 5ib8:AA (3.13) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    357031 5ib8:AI (3.13) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    357032 5ib8:B5 (3.13) BS01 rna ? GO:0003735 ... Q5SHP0 27174928
    357033 5ib8:B5 (3.13) BS02 MG ? GO:0003735 ... Q5SHP0 27174928
    357034 5ib8:B8 (3.13) BS01 rna ? GO:0003735 ... P60490 27174928
    357035 5ib8:B8 (3.13) BS02 rna ? GO:0003735 ... P60490 27174928
    357036 5ib8:BA (3.13) BS01 rna ? GO:0003723 ... P80380 27174928
    357037 5ib8:BI (3.13) BS01 rna ? GO:0003723 ... P80380 27174928
    357038 5ib8:C5 (3.13) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    357039 5ib8:C8 (3.13) BS01 rna ? GO:0000027 ... P60491 27174928
    357040 5ib8:D5 (3.13) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    357041 5ib8:D5 (3.13) BS02 rna ? GO:0003723 ... Q5SHZ1 27174928
    357042 5ib8:D8 (3.13) BS01 rna ? GO:0003723 ... P60492 27174928
    357043 5ib8:E5 (3.13) BS01 rna ? GO:0003735 ... P60493 27174928
    357044 5ib8:E5 (3.13) BS02 rna ? GO:0003735 ... P60493 27174928
    357045 5ib8:E5 (3.13) BS03 rna ? GO:0003735 ... P60493 27174928
    357046 5ib8:E8 (3.13) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    357047 5ib8:F5 (3.13) BS01 rna ? GO:0003735 ... P60494 27174928
    357048 5ib8:F8 (3.13) BS01 rna ? GO:0003735 ... Q5SHP0 27174928
    357049 5ib8:G5 (3.13) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    357050 5ib8:G8 (3.13) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    357051 5ib8:H5 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    357052 5ib8:H5 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    357053 5ib8:H8 (3.13) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    357054 5ib8:I8 (3.13) BS01 rna ? GO:0003735 ... P60493 27174928
    357055 5ib8:I8 (3.13) BS02 rna ? GO:0003735 ... P60493 27174928
    357056 5ib8:J5 (3.13) BS01 rna ? GO:0003735 ... P80339 27174928
    357057 5ib8:J8 (3.13) BS01 rna ? GO:0003735 ... P60494 27174928
    357058 5ib8:K8 (3.13) BS01 rna ? GO:0003735 ... Q5SHP6 27174928
    357059 5ib8:L5 (3.13) BS01 rna ? GO:0003735 ... P80340 27174928
    357060 5ib8:L8 (3.13) BS01 rna ? GO:0003735 ... Q5SHQ6 27174928
    357061 5ib8:L8 (3.13) BS02 rna ? GO:0003735 ... Q5SHQ6 27174928
    357062 5ib8:M5 (3.13) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    357063 5ib8:M8 (3.13) BS01 rna ? GO:0003735 ... Q5SJE1 27174928
    357064 5ib8:M8 (3.13) BS02 rna ? GO:0003735 ... Q5SJE1 27174928
    357065 5ib8:N8 (3.13) BS01 rna ? GO:0003735 ... P80339 27174928
    357066 5ib8:P8 (3.13) BS01 rna ? GO:0003735 ... P80340 27174928
    357067 5ib8:Q8 (3.13) BS01 rna ? GO:0003735 ... Q5SKU1 27174928
    357068 5ib9:A (1.4) BS01 ZN ? GO:0004177 ... A2V759 N/A
    357069 5ib9:A (1.4) BS02 ZN ? GO:0004177 ... A2V759 N/A
    357070 5ib9:A (1.4) BS03 ZN ? GO:0004177 ... A2V759 N/A
    357071 5ib9:A (1.4) BS04 ZN ? GO:0004177 ... A2V759 N/A
    357072 5ib9:A (1.4) BS05 BES ? GO:0004177 ... A2V759 N/A
    357073 5ibb:11 (2.96) BS01 rna ? GO:0002181 ... P60405 27174928
    357074 5ibb:11 (2.96) BS02 rna ? GO:0002181 ... P60405 27174928
    357075 5ibb:11 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    357076 5ibb:12 (2.96) BS01 rna ? GO:0003735 ... P80371 27174928
    357077 5ibb:15 (2.96) BS01 rna ? GO:0003729 ... P60488 27174928
    357078 5ibb:19 (2.96) BS01 rna ? GO:0002181 ... P60405 27174928
    357079 5ibb:19 (2.96) BS02 rna ? GO:0002181 ... P60405 27174928
    357080 5ibb:19 (2.96) BS03 MG ? GO:0002181 ... P60405 27174928
    357081 5ibb:19 (2.96) BS04 MG ? GO:0002181 ... P60405 27174928
    357082 5ibb:1A (2.96) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    357083 5ibb:1E (2.96) BS01 rna ? GO:0003735 ... P80371 27174928
    357084 5ibb:1I (2.96) BS01 rna ? GO:0000049 ... Q5SHN7 27174928
    357085 5ibb:21 (2.96) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    357086 5ibb:21 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    357087 5ibb:22 (2.96) BS01 rna ? GO:0003676 ... P80372 27174928
    357088 5ibb:22 (2.96) BS02 rna ? GO:0003676 ... P80372 27174928
    357089 5ibb:25 (2.96) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    357090 5ibb:25 (2.96) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    357091 5ibb:29 (2.96) BS01 rna ? GO:0003735 ... Q5SHN8 27174928
    357092 5ibb:29 (2.96) BS02 MG ? GO:0003735 ... Q5SHN8 27174928
    357093 5ibb:2A (2.96) BS01 rna ? GO:0003735 ... P80376 27174928
    357094 5ibb:2A (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    357095 5ibb:2E (2.96) BS01 rna ? GO:0003676 ... P80372 27174928
    357096 5ibb:2E (2.96) BS02 rna ? GO:0003676 ... P80372 27174928
    357097 5ibb:2I (2.96) BS01 rna ? GO:0003735 ... P80376 27174928
    357098 5ibb:2I (2.96) BS02 MG ? GO:0003735 ... P80376 27174928
    357099 5ibb:31 (2.96) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    357100 5ibb:31 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    357101 5ibb:32 (2.96) BS01 rna ? GO:0003723 ... P80373 27174928
    357102 5ibb:32 (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    357103 5ibb:35 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    357104 5ibb:39 (2.96) BS01 rna ? GO:0003735 ... Q5SHN9 27174928
    357105 5ibb:39 (2.96) BS02 MG ? GO:0003735 ... Q5SHN9 27174928
    357106 5ibb:39 (2.96) BS03 MG ? GO:0003735 ... Q5SHN9 27174928
    357107 5ibb:3A (2.96) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    357108 5ibb:3A (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    357109 5ibb:3E (2.96) BS01 rna ? GO:0003723 ... P80373 27174928
    357110 5ibb:3E (2.96) BS02 SF4 ? GO:0003723 ... P80373 27174928
    357111 5ibb:3I (2.96) BS01 rna ? GO:0000049 ... Q5SHN3 27174928
    357112 5ibb:3I (2.96) BS02 MG ? GO:0000049 ... Q5SHN3 27174928
    357113 5ibb:41 (2.96) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    357114 5ibb:41 (2.96) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    357115 5ibb:41 (2.96) BS03 rna ? GO:0000049 ... Q5SHQ0 27174928
    357116 5ibb:41 (2.96) BS04 MG ? GO:0000049 ... Q5SHQ0 27174928
    357117 5ibb:42 (2.96) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    357118 5ibb:42 (2.96) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    357119 5ibb:42 (2.96) BS03 MG ? GO:0003723 ... Q5SHQ5 27174928
    357120 5ibb:45 (2.96) BS01 rna ? GO:0000049 ... P60489 27174928
    357121 5ibb:45 (2.96) BS02 rna ? GO:0000049 ... P60489 27174928
    357122 5ibb:45 (2.96) BS03 rna ? GO:0000049 ... P60489 27174928
    357123 5ibb:49 (2.96) BS01 rna ? GO:0000049 ... Q5SHQ0 27174928
    357124 5ibb:49 (2.96) BS02 rna ? GO:0000049 ... Q5SHQ0 27174928
    357125 5ibb:49 (2.96) BS03 rna ? GO:0000049 ... Q5SHQ0 27174928
    357126 5ibb:4A (2.96) BS01 rna ? GO:0000049 ... P80377 27174928
    357127 5ibb:4E (2.96) BS01 rna ? GO:0003723 ... Q5SHQ5 27174928
    357128 5ibb:4E (2.96) BS02 rna ? GO:0003723 ... Q5SHQ5 27174928
    357129 5ibb:4I (2.96) BS01 rna ? GO:0000049 ... P80377 27174928
    357130 5ibb:51 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357131 5ibb:52 (2.96) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    357132 5ibb:55 (2.96) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    357133 5ibb:58 (2.96) BS01 rna ? GO:0003729 ... P60488 27174928
    357134 5ibb:59 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357135 5ibb:5A (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357136 5ibb:5A (2.96) BS02 ZN N/A GO:0003735 ... N/A 27174928
    357137 5ibb:5E (2.96) BS01 rna ? GO:0003735 ... Q5SLP8 27174928
    357138 5ibb:5E (2.96) BS02 MG ? GO:0003735 ... Q5SLP8 27174928
    357139 5ibb:5I (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357140 5ibb:5I (2.96) BS02 MG N/A GO:0003735 ... N/A 27174928
    357141 5ibb:5I (2.96) BS03 ZN N/A GO:0003735 ... N/A 27174928
    357142 5ibb:61 (2.96) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    357143 5ibb:62 (2.96) BS01 rna ? GO:0000049 ... P17291 27174928
    357144 5ibb:62 (2.96) BS02 rna ? GO:0000049 ... P17291 27174928
    357145 5ibb:65 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    357146 5ibb:65 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    357147 5ibb:68 (2.96) BS01 rna ? GO:0003735 ... Q5SHP8 27174928
    357148 5ibb:68 (2.96) BS02 rna ? GO:0003735 ... Q5SHP8 27174928
    357149 5ibb:69 (2.96) BS01 rna ? GO:0003735 ... Q5SLQ1 27174928
    357150 5ibb:69 (2.96) BS02 rna ? GO:0003735 ... Q5SLQ1 27174928
    357151 5ibb:6A (2.96) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    357152 5ibb:6A (2.96) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    357153 5ibb:6E (2.96) BS01 rna ? GO:0000049 ... P17291 27174928
    357154 5ibb:6E (2.96) BS02 rna ? GO:0000049 ... P17291 27174928
    357155 5ibb:6I (2.96) BS01 rna ? GO:0003735 ... Q5SJ76 27174928
    357156 5ibb:6I (2.96) BS02 rna ? GO:0003735 ... Q5SJ76 27174928
    357157 5ibb:71 (2.96) BS01 rna ? GO:0000049 ... P27150 27174928
    357158 5ibb:71 (2.96) BS02 rna ? GO:0000049 ... P27150 27174928
    357159 5ibb:72 (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357160 5ibb:75 (2.96) BS01 rna ? GO:0003735 ... P60490 27174928
    357161 5ibb:75 (2.96) BS02 rna ? GO:0003735 ... P60490 27174928
    357162 5ibb:78 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ7 27174928
    357163 5ibb:79 (2.96) BS01 rna ? GO:0000049 ... P27150 27174928
    357164 5ibb:79 (2.96) BS02 rna ? GO:0000049 ... P27150 27174928
    357165 5ibb:7A (2.96) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    357166 5ibb:7E (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357167 5ibb:7I (2.96) BS01 rna ? GO:0003735 ... Q5SJH3 27174928
    357168 5ibb:82 (2.96) BS01 rna ? GO:0000049 ... P80374 27174928
    357169 5ibb:85 (2.96) BS01 rna ? GO:0000027 ... P60491 27174928
    357170 5ibb:88 (2.96) BS01 rna ? GO:0000049 ... P60489 27174928
    357171 5ibb:88 (2.96) BS02 rna ? GO:0000049 ... P60489 27174928
    357172 5ibb:88 (2.96) BS03 rna ? GO:0000049 ... P60489 27174928
    357173 5ibb:88 (2.96) BS04 MG ? GO:0000049 ... P60489 27174928
    357174 5ibb:8A (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357175 5ibb:8E (2.96) BS01 rna ? GO:0000049 ... P80374 27174928
    357176 5ibb:8E (2.96) BS02 rna ? GO:0000049 ... P80374 27174928
    357177 5ibb:8I (2.96) BS01 rna N/A GO:0003735 ... N/A 27174928
    357178 5ibb:95 (2.96) BS01 rna ? GO:0003723 ... P60492 27174928
    357179 5ibb:98 (2.96) BS01 rna ? GO:0003735 ... Q9Z9H5 27174928
    357180 5ibb:9A (2.96) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    357181 5ibb:9I (2.96) BS01 rna ? GO:0003735 ... Q5SLQ0 27174928
    357182 5ibb:A5 (2.96) BS01 rna ? GO:0003735 ... Q5SHP3 27174928
    357183 5ibb:A8 (2.96) BS01 rna ? GO:0003735 ... Q5SHQ4 27174928
    357184 5ibb:A8 (2.96) BS02 rna ? GO:0003735 ... Q5SHQ4 27174928
    357185 5ibb:AA (2.96) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    357186 5ibb:AI (2.96) BS01 rna ? GO:0000028 ... Q5SHP2 27174928
    357187 5ibb:B5 (2.96) BS01 rna ? GO:0003735 ... Q5SHP0 27174928
    357188 5ibb:B8 (2.96) BS01 rna ? GO:0003735 ... P60490 27174928
    357189 5ibb:B8 (2.96) BS02 rna ? GO:0003735 ... P60490 27174928
    357190 5ibb:BA (2.96) BS01 rna ? GO:0003723 ... P80380 27174928
    357191 5ibb:BI (2.96) BS01 rna ? GO:0003723 ... P80380 27174928
    357192 5ibb:C5 (2.96) BS01 rna ? GO:0003723 ... Q5SHP9 27174928
    357193 5ibb:C5 (2.96) BS02 ZN ? GO:0003723 ... Q5SHP9 27174928
    357194 5ibb:C8 (2.96) BS01 rna ? GO:0000027 ... P60491 27174928
    357195 5ibb:D5 (2.96) BS01 rna ? GO:0003723 ... Q5SHZ1 27174928
    357196 5ibb:D8 (2.96) BS01 rna ? GO:0003723 ... P60492 27174928
    357197 5ibb:D8 (2.96) BS02 MG ? GO:0003723 ... P60492 27174928
    357198 5ibb:E5 (2.96) BS01 rna ? GO:0003735 ... P60493 27174928
    357199 5ibb:E5 (2.96) BS02 rna ? GO:0003735 ... P60493 27174928
    357200 5ibb:E8 (2.96) BS01 rna ? GO:0003735 ... Q5SHP3 27174928

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).