SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    358601 5iqi:B (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358602 5iqi:B (2.15) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358603 5iqi:C (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358604 5iqi:C (2.15) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358605 5iqi:D (2.15) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358606 5iqi:D (2.15) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 27161980
    358607 5iqj:A (1.9) BS01 TTN ? N/A M1QWM5 N/A
    358608 5iqj:C (1.9) BS01 TTN ? N/A M1QWM5 N/A
    358609 5iqk:A (1.75) BS01 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358610 5iqk:A (1.75) BS02 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358611 5iqk:A (1.75) BS03 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358612 5iqk:B (1.75) BS01 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358613 5iqk:B (1.75) BS02 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358614 5iqk:B (1.75) BS03 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358615 5iqk:B (1.75) BS04 ZN 3.5.2.6 GO:0046872 ... A0A059Q5E8 27431213
    358616 5iql:A (2.1) BS01 peptide ? GO:0006355 ... Q9ULM3 27103431
    358617 5iqm:A (1.5) BS01 peptide ? GO:0005515 ... P08190 27351462
    358618 5iqm:A (1.5) BS02 peptide ? GO:0005515 ... P08190 27351462
    358619 5iqm:G (1.5) BS01 peptide ? GO:0005515 ... P08190 27351462
    358620 5iqm:G (1.5) BS02 peptide ? GO:0005515 ... P08190 27351462
    358621 5iqn:A (1.0) BS01 peptide ? GO:0005515 ... P08190 27351462
    358622 5iqn:A (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    358623 5iqn:G (1.0) BS01 peptide ? GO:0005515 ... P08190 27351462
    358624 5iqn:G (1.0) BS02 CO ? GO:0005515 ... P08190 27351462
    358625 5iqo:A (1.302) BS01 peptide ? GO:0005515 ... P08190 27351462
    358626 5iqo:A (1.302) BS02 peptide ? GO:0005515 ... P08190 27351462
    358627 5iqo:A (1.302) BS03 CO ? GO:0005515 ... P08190 27351462
    358628 5iqo:C (1.302) BS01 peptide ? GO:0005515 ... P08190 27351462
    358629 5iqo:C (1.302) BS02 peptide ? GO:0005515 ... P08190 27351462
    358630 5iqr:8 (3.0) BS01 rna 2.7.6.5 GO:0005515 ... P0AG20 27279228
    358631 5iqr:8 (3.0) BS02 rna 2.7.6.5 GO:0005515 ... P0AG20 27279228
    358632 5iqr:8 (3.0) BS03 rna 2.7.6.5 GO:0005515 ... P0AG20 27279228
    358633 5iqr:8 (3.0) BS04 ZN 2.7.6.5 GO:0005515 ... P0AG20 27279228
    358634 5iqr:B (3.0) BS01 rna ? GO:0000027 ... P60422 27279228
    358635 5iqr:B (3.0) BS02 rna ? GO:0000027 ... P60422 27279228
    358636 5iqr:C (3.0) BS01 rna ? GO:0000027 ... P60438 27279228
    358637 5iqr:D (3.0) BS01 rna ? GO:0001070 ... P60723 27279228
    358638 5iqr:E (3.0) BS01 rna ? GO:0000027 ... P62399 27279228
    358639 5iqr:E (3.0) BS02 rna ? GO:0000027 ... P62399 27279228
    358640 5iqr:E (3.0) BS03 rna ? GO:0000027 ... P62399 27279228
    358641 5iqr:F (3.0) BS01 rna ? GO:0000027 ... P0AG55 27279228
    358642 5iqr:G (3.0) BS01 rna ? GO:0002181 ... P0A7R1 27279228
    358643 5iqr:H (3.0) BS01 rna ? GO:0002181 ... P0A7J3 27279228
    358644 5iqr:I (3.0) BS01 rna ? GO:0000027 ... P0A7J7 27279228
    358645 5iqr:J (3.0) BS01 rna ? GO:0002181 ... P0AA10 27279228
    358646 5iqr:K (3.0) BS01 rna ? GO:0002181 ... P0ADY3 27279228
    358647 5iqr:K (3.0) BS02 rna ? GO:0002181 ... P0ADY3 27279228
    358648 5iqr:L (3.0) BS01 rna ? GO:0002181 ... P02413 27279228
    358649 5iqr:M (3.0) BS01 rna ? GO:0000027 ... P0ADY7 27279228
    358650 5iqr:M (3.0) BS02 rna ? GO:0000027 ... P0ADY7 27279228
    358651 5iqr:N (3.0) BS01 rna ? GO:0000027 ... P0AG44 27279228
    358652 5iqr:O (3.0) BS01 rna ? GO:0002181 ... P0C018 27279228
    358653 5iqr:O (3.0) BS02 rna ? GO:0002181 ... P0C018 27279228
    358654 5iqr:P (3.0) BS01 rna ? GO:0000027 ... P0A7K6 27279228
    358655 5iqr:P (3.0) BS02 rna ? GO:0000027 ... P0A7K6 27279228
    358656 5iqr:Q (3.0) BS01 rna ? GO:0000027 ... P0A7L3 27279228
    358657 5iqr:R (3.0) BS01 rna ? GO:0002181 ... P0AG48 27279228
    358658 5iqr:S (3.0) BS01 rna ? GO:0002181 ... P61175 27279228
    358659 5iqr:T (3.0) BS01 rna ? GO:0000027 ... P0ADZ0 27279228
    358660 5iqr:U (3.0) BS01 rna ? GO:0000027 ... P60624 27279228
    358661 5iqr:U (3.0) BS02 MG ? GO:0000027 ... P60624 27279228
    358662 5iqr:V (3.0) BS01 rna ? GO:0000027 ... P68919 27279228
    358663 5iqr:V (3.0) BS02 rna ? GO:0000027 ... P68919 27279228
    358664 5iqr:W (3.0) BS01 rna ? GO:0000027 ... P0A7L8 27279228
    358665 5iqr:W (3.0) BS02 rna ? GO:0000027 ... P0A7L8 27279228
    358666 5iqr:X (3.0) BS01 rna ? GO:0000027 ... P0A7M2 27279228
    358667 5iqr:Y (3.0) BS01 rna ? GO:0000027 ... P0A7M6 27279228
    358668 5iqr:Z (3.0) BS01 rna ? GO:0000027 ... P0AG51 27279228
    358669 5iqr:Z (3.0) BS02 rna ? GO:0000027 ... P0AG51 27279228
    358670 5iqr:a (3.0) BS01 rna ? GO:0002181 ... P0A7M9 27279228
    358671 5iqr:a (3.0) BS02 ZN ? GO:0002181 ... P0A7M9 27279228
    358672 5iqr:b (3.0) BS01 rna ? GO:0000027 ... P0A7N4 27279228
    358673 5iqr:c (3.0) BS01 rna ? GO:0000027 ... P0A7N9 27279228
    358674 5iqr:d (3.0) BS01 rna ? GO:0002181 ... P0A7P5 27279228
    358675 5iqr:e (3.0) BS01 rna ? GO:0002181 ... P0A7Q1 27279228
    358676 5iqr:f (3.0) BS01 rna ? GO:0002181 ... P0A7Q6 27279228
    358677 5iqr:f (3.0) BS02 ZN ? GO:0002181 ... P0A7Q6 27279228
    358678 5iqr:g (3.0) BS01 rna ? GO:0000028 ... P0A7V0 27279228
    358679 5iqr:h (3.0) BS01 rna ? GO:0000028 ... P0A7V3 27279228
    358680 5iqr:i (3.0) BS01 rna ? GO:0000028 ... P0A7V8 27279228
    358681 5iqr:j (3.0) BS01 rna ? GO:0000028 ... P0A7W1 27279228
    358682 5iqr:k (3.0) BS01 rna ? GO:0002181 ... P02358 27279228
    358683 5iqr:l (3.0) BS01 rna ? GO:0000028 ... P02359 27279228
    358684 5iqr:l (3.0) BS02 rna ? GO:0000028 ... P02359 27279228
    358685 5iqr:m (3.0) BS01 rna ? GO:0000028 ... P0A7W7 27279228
    358686 5iqr:n (3.0) BS01 rna ? GO:0000049 ... P0A7X3 27279228
    358687 5iqr:n (3.0) BS02 rna ? GO:0000049 ... P0A7X3 27279228
    358688 5iqr:o (3.0) BS01 rna ? GO:0000049 ... P0A7R5 27279228
    358689 5iqr:p (3.0) BS01 rna ? GO:0002181 ... P0A7R9 27279228
    358690 5iqr:q (3.0) BS01 rna ? GO:0000049 ... P0A7S3 27279228
    358691 5iqr:r (3.0) BS01 rna ? GO:0000049 ... P0A7S9 27279228
    358692 5iqr:r (3.0) BS02 rna ? GO:0000049 ... P0A7S9 27279228
    358693 5iqr:r (3.0) BS03 MG ? GO:0000049 ... P0A7S9 27279228
    358694 5iqr:s (3.0) BS01 rna ? GO:0000028 ... P0AG59 27279228
    358695 5iqr:t (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 27279228
    358696 5iqr:t (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 27279228
    358697 5iqr:u (3.0) BS01 rna ? GO:0000028 ... P0A7T3 27279228
    358698 5iqr:v (3.0) BS01 rna ? GO:0000028 ... P0AG63 27279228
    358699 5iqr:w (3.0) BS01 rna ? GO:0002181 ... P0A7T7 27279228
    358700 5iqr:x (3.0) BS01 rna ? GO:0000028 ... P0A7U3 27279228
    358701 5iqr:y (3.0) BS01 rna ? GO:0000028 ... P0A7U7 27279228
    358702 5iqr:z (3.0) BS01 rna ? GO:0000028 ... P68679 27279228
    358703 5iqs:A (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358704 5iqs:A (2.0) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358705 5iqs:B (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358706 5iqs:B (2.0) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358707 5iqs:C (2.0) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358708 5iqs:C (2.0) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358709 5iqt:A (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358710 5iqt:A (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358711 5iqt:A (2.4) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358712 5iqt:B (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358713 5iqt:B (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358714 5iqt:B (2.4) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358715 5iqt:C (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358716 5iqt:C (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358717 5iqu:A (2.51) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358718 5iqu:A (2.51) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358719 5iqu:A (2.51) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358720 5iqv:A (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358721 5iqv:A (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358722 5iqv:A (2.4) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358723 5iqv:B (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358724 5iqv:B (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358725 5iqv:B (2.4) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358726 5iqv:C (2.4) BS01 FE2 ? GO:0046872 ... A0A067YX61 27348090
    358727 5iqv:C (2.4) BS02 AKG ? GO:0046872 ... A0A067YX61 27348090
    358728 5iqv:C (2.4) BS03 6CU ? GO:0046872 ... A0A067YX61 27348090
    358729 5iqx:A (1.05) BS01 HEM ? GO:0046872 ... G3XD33 27074415
    358730 5iqz:A (2.334) BS01 GLC ?
    2.3.1.-
    2.3.1.286
    GO:0005515 ... P0AEX9
    Q9NRC8
    27287224
    358731 5iqz:A (2.334) BS02 GLC ?
    2.3.1.-
    2.3.1.286
    GO:0005515 ... P0AEX9
    Q9NRC8
    27287224
    358732 5ir1:A (2.482) BS01 peptide N/A N/A N/A 27834791
    358733 5ir1:B (2.482) BS01 peptide N/A N/A N/A 27834791
    358734 5ir1:C (2.482) BS01 peptide N/A N/A N/A 27834791
    358735 5ir1:D (2.482) BS01 peptide N/A N/A N/A 27834791
    358736 5ir4:A (1.48) BS01 FE2 1.13.11.-
    1.13.11.33
    GO:0016702 ... Q9I4G8 27500637
    358737 5ir4:A (1.48) BS02 ZPE 1.13.11.-
    1.13.11.33
    GO:0016702 ... Q9I4G8 27500637
    358738 5ir5:A (1.9) BS01 FE2 1.13.11.-
    1.13.11.33
    GO:0016702 ... Q9I4G8 27500637
    358739 5ir5:A (1.9) BS02 ZPE 1.13.11.-
    1.13.11.33
    GO:0016702 ... Q9I4G8 27500637
    358740 5ir6:A (3.8) BS01 HEB ? GO:0005886 ... Q9Z9N1 27126043
    358741 5ir6:A (3.8) BS02 HEB ? GO:0005886 ... Q9Z9N1 27126043
    358742 5ir6:A (3.8) BS03 HDD ? GO:0005886 ... Q9Z9N1 27126043
    358743 5ira:A (1.5) BS01 9RU N/A GO:0009374 ... N/A 27571282
    358744 5irb:A (2.0) BS01 CA ? N/A A1YIY2 28808685
    358745 5irb:A (2.0) BS02 CA ? N/A A1YIY2 28808685
    358746 5irb:A (2.0) BS03 CA ? N/A A1YIY2 28808685
    358747 5irb:A (2.0) BS04 CA ? N/A A1YIY2 28808685
    358748 5irb:A (2.0) BS05 CA ? N/A A1YIY2 28808685
    358749 5irb:A (2.0) BS06 CA ? N/A A1YIY2 28808685
    358750 5irb:A (2.0) BS07 CA ? N/A A1YIY2 28808685
    358751 5irb:A (2.0) BS08 CA ? N/A A1YIY2 28808685
    358752 5irb:A (2.0) BS09 CA ? N/A A1YIY2 28808685
    358753 5irb:B (2.0) BS01 CA ? N/A A1YIY2 28808685
    358754 5irb:B (2.0) BS02 CA ? N/A A1YIY2 28808685
    358755 5irb:B (2.0) BS03 CA ? N/A A1YIY2 28808685
    358756 5irb:B (2.0) BS04 CA ? N/A A1YIY2 28808685
    358757 5irb:B (2.0) BS05 CA ? N/A A1YIY2 28808685
    358758 5irb:B (2.0) BS06 CA ? N/A A1YIY2 28808685
    358759 5irb:B (2.0) BS07 CA ? N/A A1YIY2 28808685
    358760 5irb:B (2.0) BS08 CA ? N/A A1YIY2 28808685
    358761 5irb:B (2.0) BS09 MG ? N/A A1YIY2 28808685
    358762 5irb:B (2.0) BS10 MG ? N/A A1YIY2 28808685
    358763 5irc:D (1.72) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 27481945
    358764 5irc:D (1.72) BS02 MG 3.6.5.2 GO:0000902 ... P61586 27481945
    358765 5irc:D (1.72) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 27481945
    358766 5irc:F (1.72) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 27481945
    358767 5irc:F (1.72) BS02 MG 3.6.5.2 GO:0000902 ... P61586 27481945
    358768 5irc:F (1.72) BS03 MGF 3.6.5.2 GO:0000902 ... P61586 27481945
    358769 5irl:A (3.09) BS01 ADP ? N/A G1T469 27283905
    358770 5irm:A (3.31) BS01 ADP ? N/A G1T469 27283905
    358771 5irm:C (3.31) BS01 ADP ? N/A G1T469 27283905
    358772 5irn:A (2.34) BS01 ADP ? N/A G1T469 27283905
    358773 5iro:A (2.64) BS01 peptide ? N/A P04439 27385781
    358774 5iro:D (2.64) BS01 peptide ? GO:0005537 ... Q8BEL5 27385781
    358775 5iro:E (2.64) BS01 peptide ? N/A P04439 27385781
    358776 5iro:I (2.64) BS01 peptide ? N/A P04439 27385781
    358777 5iro:M (2.64) BS01 peptide ? N/A P04439 27385781
    358778 5iro:Q (2.64) BS01 peptide ? N/A P04439 27385781
    358779 5iro:T (2.64) BS01 peptide ? GO:0005537 ... Q8BEL5 27385781
    358780 5iro:U (2.64) BS01 peptide ? N/A P04439 27385781
    358781 5iro:X (2.64) BS01 peptide ? GO:0005537 ... Q8BEL5 27385781
    358782 5irp:A (2.1) BS01 UAH 5.1.1.1 GO:0003824 ... P94494 30977502
    358783 5irp:A (2.1) BS02 TRS 5.1.1.1 GO:0003824 ... P94494 30977502
    358784 5irp:A (2.1) BS03 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    358785 5irp:B (2.1) BS01 UAH 5.1.1.1 GO:0003824 ... P94494 30977502
    358786 5irp:B (2.1) BS02 TRS 5.1.1.1 GO:0003824 ... P94494 30977502
    358787 5irp:B (2.1) BS03 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    358788 5irp:B (2.1) BS04 MG 5.1.1.1 GO:0003824 ... P94494 30977502
    358789 5irq:A (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    358790 5irq:A (2.202) BS02 6D7 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265 BindingDB: IC50=38nM
    358791 5irq:B (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    358792 5irq:B (2.202) BS02 6D7 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265 BindingDB: IC50=38nM
    358793 5irq:C (2.202) BS01 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    358794 5irq:C (2.202) BS02 7D6 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265 BindingDB: IC50=4.00nM, Kd=40nM
    358795 5irq:D (2.202) BS01 7D6 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265 BindingDB: IC50=4.00nM, Kd=40nM
    358796 5irq:D (2.202) BS02 HEM 1.14.14.19
    1.14.14.32
    GO:0004497 ... P05093 28373265
    358797 5irr:A (2.04) BS01 MG ? GO:0005525 ... A8IYS5 28476887
    358798 5irr:A (2.04) BS02 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    358799 5irr:A (2.04) BS03 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM
    358800 5irr:B (2.04) BS01 GSP ? GO:0005525 ... A8IYS5 28476887 MOAD: Kd=5.4uM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).