SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    359201 5it8:D1 (3.12) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    359202 5it8:D2 (3.12) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    359203 5it8:D3 (3.12) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    359204 5it8:D4 (3.12) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    359205 5it8:D5 (3.12) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    359206 5it8:D5 (3.12) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    359207 5it8:DC (3.12) BS01 rna ? GO:0000027 ... P60422 27382179
    359208 5it8:DD (3.12) BS01 rna ? GO:0000027 ... P60438 27382179
    359209 5it8:DE (3.12) BS01 rna ? GO:0001070 ... P60723 27382179
    359210 5it8:DF (3.12) BS01 rna ? GO:0000027 ... P62399 27382179
    359211 5it8:DF (3.12) BS02 rna ? GO:0000027 ... P62399 27382179
    359212 5it8:DG (3.12) BS01 rna ? GO:0000027 ... P0AG55 27382179
    359213 5it8:DH (3.12) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    359214 5it8:DH (3.12) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    359215 5it8:DI (3.12) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    359216 5it8:DJ (3.12) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    359217 5it8:DK (3.12) BS01 rna ? GO:0002181 ... P0AA10 27382179
    359218 5it8:DL (3.12) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    359219 5it8:DL (3.12) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    359220 5it8:DM (3.12) BS01 rna ? GO:0002181 ... P02413 27382179
    359221 5it8:DN (3.12) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    359222 5it8:DN (3.12) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    359223 5it8:DO (3.12) BS01 rna ? GO:0000027 ... P0AG44 27382179
    359224 5it8:DP (3.12) BS01 rna ? GO:0002181 ... P0C018 27382179
    359225 5it8:DP (3.12) BS02 rna ? GO:0002181 ... P0C018 27382179
    359226 5it8:DQ (3.12) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    359227 5it8:DQ (3.12) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    359228 5it8:DR (3.12) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    359229 5it8:DS (3.12) BS01 rna ? GO:0002181 ... P0AG48 27382179
    359230 5it8:DT (3.12) BS01 rna ? GO:0002181 ... P61175 27382179
    359231 5it8:DU (3.12) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    359232 5it8:DV (3.12) BS01 rna ? GO:0000027 ... P60624 27382179
    359233 5it8:DW (3.12) BS01 rna ? GO:0000027 ... P68919 27382179
    359234 5it8:DW (3.12) BS02 rna ? GO:0000027 ... P68919 27382179
    359235 5it8:DX (3.12) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    359236 5it8:DX (3.12) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    359237 5it8:DY (3.12) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    359238 5it8:DZ (3.12) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    359239 5it9:A (3.8) BS01 rna ? GO:0003735 ... Q6CN12 27159451
    359240 5it9:B (3.8) BS01 rna ? GO:0003735 ... Q6CWD0 27159451
    359241 5it9:C (3.8) BS01 rna ? GO:0003723 ... Q6CKL3 27159451
    359242 5it9:C (3.8) BS02 rna ? GO:0003723 ... Q6CKL3 27159451
    359243 5it9:D (3.8) BS01 rna ? GO:0003723 ... Q6CRK7 27159451
    359244 5it9:D (3.8) BS02 rna ? GO:0003723 ... Q6CRK7 27159451
    359245 5it9:E (3.8) BS01 rna ? GO:0003723 ... Q6CWJ2 27159451
    359246 5it9:F (3.8) BS01 rna ? GO:0003723 ... Q6CRA3 27159451
    359247 5it9:F (3.8) BS02 rna ? GO:0003723 ... Q6CRA3 27159451
    359248 5it9:G (3.8) BS01 rna ? GO:0003735 ... Q6CM04 27159451
    359249 5it9:H (3.8) BS01 rna ? GO:0003735 ... Q6CTD6 27159451
    359250 5it9:I (3.8) BS01 rna ? GO:0003735 ... Q6CMG3 27159451
    359251 5it9:J (3.8) BS01 rna ? GO:0003723 ... Q6CM18 27159451
    359252 5it9:K (3.8) BS01 rna ? GO:0003723 ... Q6CVZ5 27159451
    359253 5it9:L (3.8) BS01 rna ? GO:0003735 ... Q6CX80 27159451
    359254 5it9:M (3.8) BS01 rna ? GO:0003735 ... Q6CLU4 27159451
    359255 5it9:N (3.8) BS01 rna ? GO:0003735 ... Q6CJK0 27159451
    359256 5it9:O (3.8) BS01 rna ? GO:0003735 ... P27069 27159451
    359257 5it9:P (3.8) BS01 rna ? GO:0003723 ... Q6CKV4 27159451
    359258 5it9:Q (3.8) BS01 rna ? GO:0000462 ... Q875N2 27159451
    359259 5it9:R (3.8) BS01 rna ? GO:0003735 ... Q6CWU3 27159451
    359260 5it9:S (3.8) BS01 rna ? GO:0003676 ... Q6CWT9 27159451
    359261 5it9:T (3.8) BS01 rna ? GO:0000028 ... Q6CXM0 27159451
    359262 5it9:U (3.8) BS01 rna ? GO:0003735 ... Q6CIM1 27159451
    359263 5it9:V (3.8) BS01 rna ? GO:0003735 ... Q6CXT6 27159451
    359264 5it9:W (3.8) BS01 rna ? GO:0003735 ... Q6CW21 27159451
    359265 5it9:X (3.8) BS01 rna ? GO:0003735 ... Q875M3 27159451
    359266 5it9:Y (3.8) BS01 rna ? GO:0003735 ... Q6CU44 27159451
    359267 5it9:Z (3.8) BS01 rna ? N/A Q6CW78 27159451
    359268 5it9:Z (3.8) BS02 rna ? N/A Q6CW78 27159451
    359269 5it9:a (3.8) BS01 rna ? GO:0003735 ... Q6CS01 27159451
    359270 5it9:a (3.8) BS02 ZN ? GO:0003735 ... Q6CS01 27159451
    359271 5it9:b (3.8) BS01 rna ? GO:0003735 ... Q6CNL2 27159451
    359272 5it9:c (3.8) BS01 rna ? GO:0000028 ... P33285 27159451
    359273 5it9:d (3.8) BS01 rna ? GO:0002181 ... Q6CPG3 27159451
    359274 5it9:e (3.8) BS01 rna ? GO:0003735 ... Q6CUH5 27159451
    359275 5it9:f (3.8) BS01 rna ? GO:0003735 ... P69061 27159451
    359276 5it9:g (3.8) BS01 rna ? GO:0006417 ... Q6CNI7 27159451
    359277 5ita:A (1.95) BS01 6DC 2.7.11.1 GO:0004672 ... P15056 N/A BindingDB: IC50=6.0nM
    359278 5ita:B (1.95) BS01 6DC 2.7.11.1 GO:0004672 ... P15056 N/A BindingDB: IC50=6.0nM
    359279 5itc:A (1.999) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359280 5itc:B (1.999) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359281 5itc:C (1.999) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359282 5itd:A (3.02) BS01 6CY 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 27563400 BindingDB: IC50=262nM
    359283 5ite:A (2.182) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359284 5ite:B (2.182) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359285 5ite:C (2.182) BS01 RET ? GO:0005216 ... Q18DH8 28089451
    359286 5itf:A (2.51) BS01 peptide N/A N/A N/A 27834791
    359287 5itf:B (2.51) BS01 peptide N/A N/A N/A 27834791
    359288 5itf:C (2.51) BS01 peptide N/A N/A N/A 27834791
    359289 5itf:D (2.51) BS01 peptide N/A N/A N/A 27834791
    359290 5ith:A (2.31) BS01 dna ? GO:0003676 ... P31483 28184449
    359291 5iti:A (1.95) BS01 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    359292 5iti:A (1.95) BS02 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    359293 5iti:A (1.95) BS03 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    359294 5iti:A (1.95) BS04 CA 3.1.3.16 GO:0004722 ... Q8DGS1 N/A
    359295 5ito:A (2.35) BS01 6DB ? GO:0015276 ... P35120 27801902 MOAD: Kd=68.9uM
    359296 5ito:B (2.35) BS01 6DB ? GO:0015276 ... P35120 27801902 MOAD: Kd=68.9uM
    359297 5itp:A (1.85) BS01 6DB ? GO:0015276 ... P35120 27801902 MOAD: Kd=9.9uM
    359298 5itp:B (1.85) BS01 6DB ? GO:0015276 ... P35120 27801902 MOAD: Kd=9.9uM
    359299 5itr:A (2.46) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359300 5itr:A (2.46) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359301 5itr:B (2.46) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359302 5itr:C (2.46) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359303 5itt:A (2.53) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359304 5itt:A (2.53) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359305 5itt:B (2.53) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359306 5itt:C (2.53) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359307 5itu:A (2.41) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359308 5itu:A (2.41) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359309 5itu:A (2.41) BS03 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359310 5itu:B (2.41) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359311 5itu:B (2.41) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359312 5itu:C (2.41) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359313 5itu:C (2.41) BS02 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359314 5itv:A (2.26) BS01 NAI 1.1.1.385 GO:0016491 ... P39640 28158843
    359315 5itv:B (2.26) BS01 NAI 1.1.1.385 GO:0016491 ... P39640 28158843
    359316 5itv:C (2.26) BS01 NAI 1.1.1.385 GO:0016491 ... P39640 28158843
    359317 5itv:D (2.26) BS01 NAI 1.1.1.385 GO:0016491 ... P39640 28158843
    359318 5itx:A (2.65) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359319 5itx:B (2.65) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359320 5itx:E (2.65) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359321 5ity:A (2.48) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359322 5ity:B (2.48) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359323 5ity:C (2.48) BS01 dna 3.2.2.-
    4.2.99.18
    GO:0003676 ... Q96FI4 27354518
    359324 5itz:A (2.2) BS01 peptide 3.6.5.- GO:0000226 ... P81947 27219064
    359325 5itz:A (2.2) BS02 GTP 3.6.5.- GO:0000226 ... P81947 27219064
    359326 5itz:A (2.2) BS03 LOC 3.6.5.- GO:0000226 ... P81947 27219064
    359327 5itz:B (2.2) BS01 peptide ? GO:0000226 ... Q6B856 27219064
    359328 5itz:B (2.2) BS02 GDP ? GO:0000226 ... Q6B856 27219064
    359329 5itz:B (2.2) BS03 LOC ? GO:0000226 ... Q6B856 27219064 BindingDB: IC50=800nM, Ki=780nM
    359330 5iu0:A (1.499) BS01 MG 4.1.1.39 GO:0000287 ... O03042 29372894
    359331 5iu0:A (1.499) BS02 CAP 4.1.1.39 GO:0000287 ... O03042 29372894
    359332 5iu0:A (1.499) BS03 CAP 4.1.1.39 GO:0000287 ... O03042 29372894
    359333 5iu0:B (1.499) BS01 CAP 4.1.1.39 GO:0000287 ... O03042 29372894
    359334 5iu0:B (1.499) BS02 MG 4.1.1.39 GO:0000287 ... O03042 29372894
    359335 5iu0:B (1.499) BS03 CAP 4.1.1.39 GO:0000287 ... O03042 29372894
    359336 5iu2:A (2.7) BS01 6DA 2.7.11.25 GO:0004672 ... P41279 27502541 BindingDB: IC50=16nM
    359337 5iu2:B (2.7) BS01 6DA 2.7.11.25 GO:0004672 ... P41279 27502541 BindingDB: IC50=16nM
    359338 5iu4:A (1.72) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    27312113 MOAD: Ki=0.53nM
    359339 5iu4:A (1.72) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359340 5iu4:A (1.72) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359341 5iu4:A (1.72) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359342 5iu4:A (1.72) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359343 5iu6:A (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020
    359344 5iu6:B (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020
    359345 5iu6:C (2.51) BS01 7HX 2.4.2.1 GO:0003824 ... P0ABP8 29870020
    359346 5iu7:A (1.9) BS01 6DY ? GO:0001609 ... P0ABE7
    P29274
    27312113 MOAD: Ki=1.1nM
    359347 5iu7:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359348 5iu7:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359349 5iu7:A (1.9) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359350 5iu7:A (1.9) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359351 5iu8:A (2.002) BS01 6DZ ? GO:0001609 ... P0ABE7
    P29274
    27312113 MOAD: Ki=18nM
    359352 5iu8:A (2.002) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359353 5iu8:A (2.002) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359354 5iu8:A (2.002) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359355 5iu8:A (2.002) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359356 5iu9:A (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    359357 5iu9:A (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    359358 5iu9:A (3.59) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    359359 5iu9:A (3.59) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    359360 5iu9:A (3.59) BS05 CA ? GO:0005509 ... F8W3X3 27787195
    359361 5iu9:A (3.59) BS06 CA ? GO:0005509 ... F8W3X3 27787195
    359362 5iu9:A (3.59) BS07 CA ? GO:0005509 ... F8W3X3 27787195
    359363 5iu9:A (3.59) BS08 CA ? GO:0005509 ... F8W3X3 27787195
    359364 5iu9:A (3.59) BS09 CA ? GO:0005509 ... F8W3X3 27787195
    359365 5iu9:B (3.59) BS01 CA ? GO:0005509 ... F8W3X3 27787195
    359366 5iu9:B (3.59) BS02 CA ? GO:0005509 ... F8W3X3 27787195
    359367 5iu9:B (3.59) BS03 CA ? GO:0005509 ... F8W3X3 27787195
    359368 5iu9:B (3.59) BS04 CA ? GO:0005509 ... F8W3X3 27787195
    359369 5iu9:B (3.59) BS05 CA ? GO:0005509 ... F8W3X3 27787195
    359370 5iu9:B (3.59) BS06 CA ? GO:0005509 ... F8W3X3 27787195
    359371 5iu9:B (3.59) BS07 CA ? GO:0005509 ... F8W3X3 27787195
    359372 5iu9:B (3.59) BS08 CA ? GO:0005509 ... F8W3X3 27787195
    359373 5iu9:B (3.59) BS09 CA ? GO:0005509 ... F8W3X3 27787195
    359374 5iua:A (2.2) BS01 6DX ? GO:0001609 ... P0ABE7
    P29274
    27312113 MOAD: Ki=1.5nM
    359375 5iua:A (2.2) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359376 5iua:A (2.2) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359377 5iua:A (2.2) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359378 5iua:A (2.2) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359379 5iub:A (2.1) BS01 6DV ? GO:0001609 ... P0ABE7
    P29274
    27312113 MOAD: Ki=0.35nM
    359380 5iub:A (2.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359381 5iub:A (2.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359382 5iub:A (2.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    27312113
    359383 5iuc:A (1.253) BS01 GAL ? N/A Q939N5 21765814
    359384 5iuc:A (1.253) BS02 SIA ? N/A Q939N5 21765814
    359385 5iuc:A (1.253) BS03 MG ? N/A Q939N5 21765814
    359386 5iuc:B (1.253) BS01 GAL ? N/A Q939N5 21765814
    359387 5iuc:B (1.253) BS02 SIA ? N/A Q939N5 21765814
    359388 5iuc:B (1.253) BS03 MG ? N/A Q939N5 21765814
    359389 5iud:A (3.3) BS01 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359390 5iud:A (3.3) BS02 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359391 5iud:D (3.3) BS01 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359392 5iud:D (3.3) BS02 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359393 5iud:G (3.3) BS01 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359394 5iud:G (3.3) BS02 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359395 5iud:J (3.3) BS01 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359396 5iud:J (3.3) BS02 dna 2.7.7.7 GO:0000166 ... P09884 27032819
    359397 5iue:A (2.62) BS01 peptide ? N/A P30511 28636952
    359398 5iue:E (2.62) BS01 peptide ? N/A P30511 28636952
    359399 5iue:G (2.62) BS01 peptide ? N/A P30511 28636952
    359400 5iue:I (2.62) BS01 peptide ? N/A P30511 28636952

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).