SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    360401 5j30:RD (3.2) BS01 rna ? GO:0002181 ... P60405 27681416
    360402 5j30:RD (3.2) BS02 rna ? GO:0002181 ... P60405 27681416
    360403 5j30:RD (3.2) BS03 MG ? GO:0002181 ... P60405 27681416
    360404 5j30:RD (3.2) BS04 MG ? GO:0002181 ... P60405 27681416
    360405 5j30:RD (3.2) BS05 MG ? GO:0002181 ... P60405 27681416
    360406 5j30:RD (3.2) BS06 MG ? GO:0002181 ... P60405 27681416
    360407 5j30:RD (3.2) BS07 MG ? GO:0002181 ... P60405 27681416
    360408 5j30:RD (3.2) BS08 MG ? GO:0002181 ... P60405 27681416
    360409 5j30:RD (3.2) BS09 MG ? GO:0002181 ... P60405 27681416
    360410 5j30:RD (3.2) BS10 MG ? GO:0002181 ... P60405 27681416
    360411 5j30:RD (3.2) BS11 MG ? GO:0002181 ... P60405 27681416
    360412 5j30:RD (3.2) BS12 MG ? GO:0002181 ... P60405 27681416
    360413 5j30:RE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    360414 5j30:RE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    360415 5j30:RE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    360416 5j30:RE (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 27681416
    360417 5j30:RF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    360418 5j30:RF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    360419 5j30:RF (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    360420 5j30:RF (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    360421 5j30:RF (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    360422 5j30:RF (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 27681416
    360423 5j30:RF (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 27681416
    360424 5j30:RF (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 27681416
    360425 5j30:RF (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 27681416
    360426 5j30:RF (3.2) BS10 MG ? GO:0003735 ... Q5SHN9 27681416
    360427 5j30:RF (3.2) BS11 MG ? GO:0003735 ... Q5SHN9 27681416
    360428 5j30:RF (3.2) BS12 MG ? GO:0003735 ... Q5SHN9 27681416
    360429 5j30:RG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    360430 5j30:RG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    360431 5j30:RG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    360432 5j30:RG (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    360433 5j30:RG (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 27681416
    360434 5j30:RG (3.2) BS06 MG ? GO:0000049 ... Q5SHQ0 27681416
    360435 5j30:RH (3.2) BS01 rna N/A GO:0003735 ... N/A 27681416
    360436 5j30:RI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    360437 5j30:RN (3.2) BS01 rna ? GO:0003729 ... P60488 27681416
    360438 5j30:RN (3.2) BS02 MG ? GO:0003729 ... P60488 27681416
    360439 5j30:RN (3.2) BS03 MG ? GO:0003729 ... P60488 27681416
    360440 5j30:RO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    360441 5j30:RO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    360442 5j30:RP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    360443 5j30:RP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 27681416
    360444 5j30:RP (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 27681416
    360445 5j30:RQ (3.2) BS01 rna ? GO:0000049 ... P60489 27681416
    360446 5j30:RQ (3.2) BS02 rna ? GO:0000049 ... P60489 27681416
    360447 5j30:RQ (3.2) BS03 MG ? GO:0000049 ... P60489 27681416
    360448 5j30:RQ (3.2) BS04 MG ? GO:0000049 ... P60489 27681416
    360449 5j30:RQ (3.2) BS05 MG ? GO:0000049 ... P60489 27681416
    360450 5j30:RQ (3.2) BS06 MG ? GO:0000049 ... P60489 27681416
    360451 5j30:RQ (3.2) BS07 MG ? GO:0000049 ... P60489 27681416
    360452 5j30:RR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    360453 5j30:RR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    360454 5j30:RR (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 27681416
    360455 5j30:RR (3.2) BS04 MG ? GO:0003735 ... Q9Z9H5 27681416
    360456 5j30:RS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    360457 5j30:RS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    360458 5j30:RT (3.2) BS01 rna ? GO:0003735 ... P60490 27681416
    360459 5j30:RT (3.2) BS02 rna ? GO:0003735 ... P60490 27681416
    360460 5j30:RU (3.2) BS01 rna ? GO:0000027 ... P60491 27681416
    360461 5j30:RU (3.2) BS02 MG ? GO:0000027 ... P60491 27681416
    360462 5j30:RU (3.2) BS03 MG ? GO:0000027 ... P60491 27681416
    360463 5j30:RU (3.2) BS04 MG ? GO:0000027 ... P60491 27681416
    360464 5j30:RU (3.2) BS05 MG ? GO:0000027 ... P60491 27681416
    360465 5j30:RU (3.2) BS06 MG ? GO:0000027 ... P60491 27681416
    360466 5j30:RV (3.2) BS01 rna ? GO:0003723 ... P60492 27681416
    360467 5j30:RV (3.2) BS02 MG ? GO:0003723 ... P60492 27681416
    360468 5j30:RV (3.2) BS03 MG ? GO:0003723 ... P60492 27681416
    360469 5j30:RV (3.2) BS04 MG ? GO:0003723 ... P60492 27681416
    360470 5j30:RW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    360471 5j30:RX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 27681416
    360472 5j30:RY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    360473 5j30:RY (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    360474 5j30:RZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    360475 5j30:RZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    360476 5j30:XB (3.2) BS01 rna ? GO:0003735 ... P80371 27681416
    360477 5j30:XC (3.2) BS01 rna ? GO:0003676 ... P80372 27681416
    360478 5j30:XD (3.2) BS01 rna ? GO:0003723 ... P80373 27681416
    360479 5j30:XD (3.2) BS02 SF4 ? GO:0003723 ... P80373 27681416
    360480 5j30:XE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 27681416
    360481 5j30:XE (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 27681416
    360482 5j30:XF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 27681416
    360483 5j30:XF (3.2) BS02 MG ? GO:0003735 ... Q5SLP8 27681416
    360484 5j30:XG (3.2) BS01 rna ? GO:0000049 ... P17291 27681416
    360485 5j30:XH (3.2) BS01 rna N/A GO:0003735 ... N/A 27681416
    360486 5j30:XI (3.2) BS01 rna ? GO:0000049 ... P80374 27681416
    360487 5j30:XJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 27681416
    360488 5j30:XK (3.2) BS01 rna ? GO:0003735 ... P80376 27681416
    360489 5j30:XL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 27681416
    360490 5j30:XM (3.2) BS01 rna ? GO:0000049 ... P80377 27681416
    360491 5j30:XN (3.2) BS01 rna N/A GO:0003735 ... N/A 27681416
    360492 5j30:XN (3.2) BS02 ZN N/A GO:0003735 ... N/A 27681416
    360493 5j30:XO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 27681416
    360494 5j30:XO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 27681416
    360495 5j30:XP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 27681416
    360496 5j30:XQ (3.2) BS01 rna N/A GO:0003735 ... N/A 27681416
    360497 5j30:XR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 27681416
    360498 5j30:XS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 27681416
    360499 5j30:XT (3.2) BS01 rna ? GO:0003723 ... P80380 27681416
    360500 5j30:XY (3.2) BS01 rna ? GO:0003747 ... P0A7I0 27681416
    360501 5j30:XY (3.2) BS02 rna ? GO:0003747 ... P0A7I0 27681416
    360502 5j30:XY (3.2) BS03 rna ? GO:0003747 ... P0A7I0 27681416
    360503 5j30:XY (3.2) BS04 rna ? GO:0003747 ... P0A7I0 27681416
    360504 5j30:XY (3.2) BS05 MG ? GO:0003747 ... P0A7I0 27681416
    360505 5j30:Y0 (3.2) BS01 rna ? GO:0003735 ... P60493 27681416
    360506 5j30:Y0 (3.2) BS02 rna ? GO:0003735 ... P60493 27681416
    360507 5j30:Y0 (3.2) BS03 rna ? GO:0003735 ... P60493 27681416
    360508 5j30:Y1 (3.2) BS01 rna ? GO:0003735 ... P60494 27681416
    360509 5j30:Y2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 27681416
    360510 5j30:Y3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 27681416
    360511 5j30:Y3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 27681416
    360512 5j30:Y4 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 27681416
    360513 5j30:Y4 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 27681416
    360514 5j30:Y5 (3.2) BS01 rna ? GO:0003735 ... P80339 27681416
    360515 5j30:Y5 (3.2) BS02 MG ? GO:0003735 ... P80339 27681416
    360516 5j30:Y5 (3.2) BS03 ZN ? GO:0003735 ... P80339 27681416
    360517 5j30:Y6 (3.2) BS01 rna ? GO:0000049 ... P35871 27681416
    360518 5j30:Y6 (3.2) BS02 ZN ? GO:0000049 ... P35871 27681416
    360519 5j30:Y7 (3.2) BS01 rna ? GO:0003735 ... P80340 27681416
    360520 5j30:Y7 (3.2) BS02 MG ? GO:0003735 ... P80340 27681416
    360521 5j30:Y7 (3.2) BS03 MG ? GO:0003735 ... P80340 27681416
    360522 5j30:Y8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 27681416
    360523 5j30:Y9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 27681416
    360524 5j30:Y9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 27681416
    360525 5j30:YD (3.2) BS01 rna ? GO:0002181 ... P60405 27681416
    360526 5j30:YD (3.2) BS02 rna ? GO:0002181 ... P60405 27681416
    360527 5j30:YD (3.2) BS03 MG ? GO:0002181 ... P60405 27681416
    360528 5j30:YD (3.2) BS04 MG ? GO:0002181 ... P60405 27681416
    360529 5j30:YD (3.2) BS05 MG ? GO:0002181 ... P60405 27681416
    360530 5j30:YD (3.2) BS06 MG ? GO:0002181 ... P60405 27681416
    360531 5j30:YD (3.2) BS07 MG ? GO:0002181 ... P60405 27681416
    360532 5j30:YD (3.2) BS08 MG ? GO:0002181 ... P60405 27681416
    360533 5j30:YD (3.2) BS09 MG ? GO:0002181 ... P60405 27681416
    360534 5j30:YE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 27681416
    360535 5j30:YE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 27681416
    360536 5j30:YE (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 27681416
    360537 5j30:YF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 27681416
    360538 5j30:YF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 27681416
    360539 5j30:YF (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 27681416
    360540 5j30:YF (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 27681416
    360541 5j30:YF (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 27681416
    360542 5j30:YG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 27681416
    360543 5j30:YG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 27681416
    360544 5j30:YG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 27681416
    360545 5j30:YG (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 27681416
    360546 5j30:YH (3.2) BS01 rna N/A GO:0003735 ... N/A 27681416
    360547 5j30:YI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 27681416
    360548 5j30:YI (3.2) BS02 rna ? GO:0003735 ... Q5SLQ1 27681416
    360549 5j30:YN (3.2) BS01 rna ? GO:0003729 ... P60488 27681416
    360550 5j30:YO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 27681416
    360551 5j30:YO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 27681416
    360552 5j30:YP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 27681416
    360553 5j30:YQ (3.2) BS01 rna ? GO:0000049 ... P60489 27681416
    360554 5j30:YQ (3.2) BS02 rna ? GO:0000049 ... P60489 27681416
    360555 5j30:YQ (3.2) BS03 MG ? GO:0000049 ... P60489 27681416
    360556 5j30:YR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 27681416
    360557 5j30:YR (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 27681416
    360558 5j30:YS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 27681416
    360559 5j30:YS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 27681416
    360560 5j30:YT (3.2) BS01 rna ? GO:0003735 ... P60490 27681416
    360561 5j30:YT (3.2) BS02 rna ? GO:0003735 ... P60490 27681416
    360562 5j30:YU (3.2) BS01 rna ? GO:0000027 ... P60491 27681416
    360563 5j30:YU (3.2) BS02 MG ? GO:0000027 ... P60491 27681416
    360564 5j30:YV (3.2) BS01 rna ? GO:0003723 ... P60492 27681416
    360565 5j30:YV (3.2) BS02 MG ? GO:0003723 ... P60492 27681416
    360566 5j30:YV (3.2) BS03 MG ? GO:0003723 ... P60492 27681416
    360567 5j30:YW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 27681416
    360568 5j30:YW (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 27681416
    360569 5j30:YW (3.2) BS03 MG ? GO:0003735 ... Q5SHP3 27681416
    360570 5j30:YX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 27681416
    360571 5j30:YY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 27681416
    360572 5j30:YY (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 27681416
    360573 5j30:YZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 27681416
    360574 5j30:YZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 27681416
    360575 5j31:A (2.4) BS01 peptide ? GO:0000122 ... P63104 27596722
    360576 5j31:B (2.4) BS01 peptide ? GO:0000122 ... P63104 27596722
    360577 5j32:A (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360578 5j32:A (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927 MOAD: Kd=8.3uM
    360579 5j32:B (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360580 5j32:B (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927
    360581 5j32:C (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360582 5j32:C (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927 MOAD: Kd=8.3uM
    360583 5j32:D (1.933) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360584 5j32:D (1.933) BS02 IPM 1.1.1.85 GO:0000287 ... P93832 27137927
    360585 5j33:A (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360586 5j33:A (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360587 5j33:B (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360588 5j33:C (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360589 5j33:C (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360590 5j33:C (3.492) BS03 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360591 5j33:D (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360592 5j33:D (3.492) BS02 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360593 5j33:E (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360594 5j33:E (3.492) BS02 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360595 5j33:E (3.492) BS03 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360596 5j33:F (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360597 5j33:G (3.492) BS01 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360598 5j33:G (3.492) BS02 NAD 1.1.1.85 GO:0000287 ... P93832 27137927
    360599 5j33:H (3.492) BS01 MG 1.1.1.85 GO:0000287 ... P93832 27137927
    360600 5j33:H (3.492) BS02 NAD 1.1.1.85 GO:0000287 ... P93832 27137927

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).