SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    361601 5j4d:Q (3.1) BS01 rna ? GO:0003735 ... Q72JU9 27107638
    361602 5j4d:Q (3.1) BS02 rna ? GO:0003735 ... Q72JU9 27107638
    361603 5j4d:Q (3.1) BS03 MG ? GO:0003735 ... Q72JU9 27107638
    361604 5j4d:QA (3.1) BS01 rna ? GO:0003735 ... P62668 27107638
    361605 5j4d:QA (3.1) BS02 MG ? GO:0003735 ... P62668 27107638
    361606 5j4d:QB (3.1) BS01 rna ? GO:0003735 ... Q72I14 27107638
    361607 5j4d:QB (3.1) BS02 rna ? GO:0003735 ... Q72I14 27107638
    361608 5j4d:QB (3.1) BS03 MG ? GO:0003735 ... Q72I14 27107638
    361609 5j4d:QB (3.1) BS04 MG ? GO:0003735 ... Q72I14 27107638
    361610 5j4d:QB (3.1) BS05 MG ? GO:0003735 ... Q72I14 27107638
    361611 5j4d:QC (3.1) BS01 rna ? GO:0003676 ... P62663 27107638
    361612 5j4d:QC (3.1) BS02 MG ? GO:0003676 ... P62663 27107638
    361613 5j4d:R (3.1) BS01 rna ? GO:0000027 ... Q72L76 27107638
    361614 5j4d:R (3.1) BS02 MG ? GO:0000027 ... Q72L76 27107638
    361615 5j4d:RA (3.1) BS01 rna ? GO:0000049 ... P62669 27107638
    361616 5j4d:RA (3.1) BS02 rna ? GO:0000049 ... P62669 27107638
    361617 5j4d:RB (3.1) BS01 rna ? GO:0003735 ... Q72I23 27107638
    361618 5j4d:RB (3.1) BS02 MG ? GO:0003735 ... Q72I23 27107638
    361619 5j4d:RB (3.1) BS03 MG ? GO:0003735 ... Q72I23 27107638
    361620 5j4d:RB (3.1) BS04 MG ? GO:0003735 ... Q72I23 27107638
    361621 5j4d:RC (3.1) BS01 rna ? GO:0003723 ... P62664 27107638
    361622 5j4d:RC (3.1) BS02 MG ? GO:0003723 ... P62664 27107638
    361623 5j4d:RC (3.1) BS03 MG ? GO:0003723 ... P62664 27107638
    361624 5j4d:RC (3.1) BS04 MG ? GO:0003723 ... P62664 27107638
    361625 5j4d:RC (3.1) BS05 MG ? GO:0003723 ... P62664 27107638
    361626 5j4d:S (3.1) BS01 rna ? GO:0003723 ... Q72HR2 27107638
    361627 5j4d:S (3.1) BS02 MG ? GO:0003723 ... Q72HR2 27107638
    361628 5j4d:SA (3.1) BS01 rna ? GO:0000049 ... P62653 27107638
    361629 5j4d:SA (3.1) BS02 MG ? GO:0000049 ... P62653 27107638
    361630 5j4d:SA (3.1) BS03 MG ? GO:0000049 ... P62653 27107638
    361631 5j4d:SB (3.1) BS01 rna ? GO:0000049 ... Q72I11 27107638
    361632 5j4d:SB (3.1) BS02 MG ? GO:0000049 ... Q72I11 27107638
    361633 5j4d:SC (3.1) BS01 rna ? GO:0003723 ... P62665 27107638
    361634 5j4d:SC (3.1) BS02 MG ? GO:0003723 ... P62665 27107638
    361635 5j4d:T (3.1) BS01 rna ? GO:0003735 ... Q72I09 27107638
    361636 5j4d:T (3.1) BS02 MG ? GO:0003735 ... Q72I09 27107638
    361637 5j4d:TA (3.1) BS01 rna ? GO:0003735 ... P62654 27107638
    361638 5j4d:TB (3.1) BS01 rna ? GO:0003735 ... Q72I33 27107638
    361639 5j4d:TB (3.1) BS02 MG ? GO:0003735 ... Q72I33 27107638
    361640 5j4d:TC (3.1) BS01 rna ? GO:0003735 ... P62666 27107638
    361641 5j4d:U (3.1) BS01 rna ? GO:0003735 ... Q72I06 27107638
    361642 5j4d:UA (3.1) BS01 rna ? GO:0000049 ... P61941 27107638
    361643 5j4d:UA (3.1) BS02 MG ? GO:0000049 ... P61941 27107638
    361644 5j4d:UB (3.1) BS01 rna ? GO:0003735 ... Q72I20 27107638
    361645 5j4d:UB (3.1) BS02 rna ? GO:0003735 ... Q72I20 27107638
    361646 5j4d:UC (3.1) BS01 rna ? GO:0000049 ... P62667 27107638
    361647 5j4d:UC (3.1) BS02 rna ? GO:0000049 ... P62667 27107638
    361648 5j4d:UC (3.1) BS03 MG ? GO:0000049 ... P62667 27107638
    361649 5j4d:V (3.1) BS01 rna ? GO:0003723 ... Q72I15 27107638
    361650 5j4d:V (3.1) BS02 ZN ? GO:0003723 ... Q72I15 27107638
    361651 5j4d:VA (3.1) BS01 rna ? GO:0000049 ... P62655 27107638
    361652 5j4d:VA (3.1) BS02 rna ? GO:0000049 ... P62655 27107638
    361653 5j4d:VB (3.1) BS01 rna ? GO:0003735 ... Q72JU9 27107638
    361654 5j4d:VB (3.1) BS02 rna ? GO:0003735 ... Q72JU9 27107638
    361655 5j4d:VB (3.1) BS03 MG ? GO:0003735 ... Q72JU9 27107638
    361656 5j4d:VC (3.1) BS01 rna ? GO:0003735 ... P62668 27107638
    361657 5j4d:W (3.1) BS01 rna ? GO:0003723 ... Q72IA7 27107638
    361658 5j4d:W (3.1) BS02 rna ? GO:0003723 ... Q72IA7 27107638
    361659 5j4d:W (3.1) BS03 MG ? GO:0003723 ... Q72IA7 27107638
    361660 5j4d:WA (3.1) BS01 rna ? GO:0003735 ... P62656 27107638
    361661 5j4d:WB (3.1) BS01 rna ? GO:0000027 ... Q72L76 27107638
    361662 5j4d:WC (3.1) BS01 rna ? GO:0000049 ... P62669 27107638
    361663 5j4d:WC (3.1) BS02 rna ? GO:0000049 ... P62669 27107638
    361664 5j4d:WC (3.1) BS03 MG ? GO:0000049 ... P62669 27107638
    361665 5j4d:WC (3.1) BS04 MG ? GO:0000049 ... P62669 27107638
    361666 5j4d:X (3.1) BS01 rna ? GO:0003735 ... P60493 27107638
    361667 5j4d:X (3.1) BS02 rna ? GO:0003735 ... P60493 27107638
    361668 5j4d:X (3.1) BS03 rna ? GO:0003735 ... P60493 27107638
    361669 5j4d:X (3.1) BS04 MG ? GO:0003735 ... P60493 27107638
    361670 5j4d:X (3.1) BS05 MG ? GO:0003735 ... P60493 27107638
    361671 5j4d:X (3.1) BS06 MG ? GO:0003735 ... P60493 27107638
    361672 5j4d:XA (3.1) BS01 rna ? GO:0003735 ... P62657 27107638
    361673 5j4d:XA (3.1) BS02 rna ? GO:0003735 ... P62657 27107638
    361674 5j4d:XB (3.1) BS01 rna ? GO:0003723 ... Q72HR2 27107638
    361675 5j4d:XB (3.1) BS02 MG ? GO:0003723 ... Q72HR2 27107638
    361676 5j4d:XC (3.1) BS01 rna ? GO:0000049 ... P62653 27107638
    361677 5j4d:XC (3.1) BS02 MG ? GO:0000049 ... P62653 27107638
    361678 5j4d:Y (3.1) BS01 rna ? GO:0003735 ... Q72G84 27107638
    361679 5j4d:Y (3.1) BS02 rna ? GO:0003735 ... Q72G84 27107638
    361680 5j4d:Y (3.1) BS03 MG ? GO:0003735 ... Q72G84 27107638
    361681 5j4d:YA (3.1) BS01 rna ? GO:0003735 ... P62238 27107638
    361682 5j4d:YB (3.1) BS01 rna ? GO:0003735 ... Q72I09 27107638
    361683 5j4d:YB (3.1) BS02 MG ? GO:0003735 ... Q72I09 27107638
    361684 5j4d:YB (3.1) BS03 MG ? GO:0003735 ... Q72I09 27107638
    361685 5j4d:YC (3.1) BS01 rna ? GO:0003735 ... P62654 27107638
    361686 5j4d:YC (3.1) BS02 MG ? GO:0003735 ... P62654 27107638
    361687 5j4d:Z (3.1) BS01 rna ? GO:0003735 ... Q72I12 27107638
    361688 5j4d:ZA (3.1) BS01 rna ? GO:0003735 ... P62658 27107638
    361689 5j4d:ZB (3.1) BS01 rna ? GO:0003735 ... Q72I06 27107638
    361690 5j4d:ZB (3.1) BS02 MG ? GO:0003735 ... Q72I06 27107638
    361691 5j4d:ZC (3.1) BS01 rna ? GO:0000049 ... P61941 27107638
    361692 5j4e:A (2.67) BS01 FMN ? GO:0000166 ... Q88E39 27291287
    361693 5j4e:B (2.67) BS01 FMN ? GO:0000166 ... Q88E39 27291287
    361694 5j4e:C (2.67) BS01 FMN ? GO:0000166 ... Q88E39 27291287
    361695 5j4e:D (2.67) BS01 FMN ? GO:0000166 ... Q88E39 27291287
    361696 5j4h:A (1.374) BS01 1F1 ? GO:0003677 ... O74036 27725183
    361697 5j4h:A (1.374) BS02 CA ? GO:0003677 ... O74036 27725183
    361698 5j4k:A (1.346) BS01 CA ? GO:0003677 ... O74036 27725183
    361699 5j4k:A (1.346) BS02 6FZ ? GO:0003677 ... O74036 27725183
    361700 5j4n:A (2.594) BS01 AG2 ? GO:0003333 ... P60061 27582465
    361701 5j4n:B (2.594) BS01 AG2 ? GO:0003333 ... P60061 27582465
    361702 5j4r:A (1.65) BS01 AKG ? GO:0046872 ... A0A067YX61 N/A
    361703 5j4t:A (1.94) BS01 peptide ? GO:0019862 ... P18670 28111895
    361704 5j4t:A (1.94) BS02 peptide ? GO:0019862 ... P18670 28111895
    361705 5j4t:A (1.94) BS03 peptide ? GO:0019862 ... P18670 28111895
    361706 5j4t:A (1.94) BS04 MBG ? GO:0019862 ... P18670 28111895
    361707 5j4t:C (1.94) BS01 peptide ? GO:0019862 ... P18670 28111895
    361708 5j4t:C (1.94) BS02 peptide ? GO:0019862 ... P18670 28111895
    361709 5j4t:C (1.94) BS03 peptide ? GO:0019862 ... P18670 28111895
    361710 5j4t:E (1.94) BS01 peptide ? GO:0019862 ... P18670 28111895
    361711 5j4t:E (1.94) BS02 peptide ? GO:0019862 ... P18670 28111895
    361712 5j4t:E (1.94) BS03 peptide ? GO:0019862 ... P18670 28111895
    361713 5j4t:G (1.94) BS01 peptide ? GO:0019862 ... P18670 28111895
    361714 5j4t:G (1.94) BS02 peptide ? GO:0019862 ... P18670 28111895
    361715 5j4t:G (1.94) BS03 peptide ? GO:0019862 ... P18670 28111895
    361716 5j4t:G (1.94) BS04 MBG ? GO:0019862 ... P18670 28111895
    361717 5j4u:A (1.249) BS01 GSH 2.5.1.18 GO:0004364 ... B9I0G5 N/A
    361718 5j4v:A (2.94) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    361719 5j4v:A (2.94) BS02 6JH 3.6.4.- GO:0003677 ... P03072 27385654 BindingDB: IC50=1400nM
    361720 5j4x:A (1.65) BS01 peptide ? GO:0019862 ... P18670 28111895
    361721 5j4x:A (1.65) BS02 peptide ? GO:0019862 ... P18670 28111895
    361722 5j4x:A (1.65) BS03 peptide ? GO:0019862 ... P18670 28111895
    361723 5j4x:A (1.65) BS04 MBG ? GO:0019862 ... P18670 28111895
    361724 5j4x:C (1.65) BS01 peptide ? GO:0019862 ... P18670 28111895
    361725 5j4x:C (1.65) BS02 peptide ? GO:0019862 ... P18670 28111895
    361726 5j4x:C (1.65) BS03 peptide ? GO:0019862 ... P18670 28111895
    361727 5j4x:E (1.65) BS01 peptide ? GO:0019862 ... P18670 28111895
    361728 5j4x:E (1.65) BS02 peptide ? GO:0019862 ... P18670 28111895
    361729 5j4x:E (1.65) BS03 peptide ? GO:0019862 ... P18670 28111895
    361730 5j4x:G (1.65) BS01 peptide ? GO:0019862 ... P18670 28111895
    361731 5j4x:G (1.65) BS02 peptide ? GO:0019862 ... P18670 28111895
    361732 5j4x:G (1.65) BS03 peptide ? GO:0019862 ... P18670 28111895
    361733 5j4y:A (2.59) BS01 ZN 3.6.4.- GO:0003677 ... P03072 27385654
    361734 5j4y:A (2.59) BS02 6JG 3.6.4.- GO:0003677 ... P03072 27385654 BindingDB: IC50=900nM
    361735 5j4z:AC (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    361736 5j4z:AC (5.8) BS02 HEM ? GO:0005739 ... P24959 27654913
    361737 5j4z:AD (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    361738 5j4z:AE (5.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    361739 5j4z:AN (5.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    361740 5j4z:AO (5.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    361741 5j4z:AP (5.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    361742 5j4z:B (5.8) BS01 SF4 N/A N/A N/A 27654913
    361743 5j4z:BN (5.8) BS01 HEA 7.1.1.9 GO:0004129 ... O78749 27654913
    361744 5j4z:BN (5.8) BS02 HEA 7.1.1.9 GO:0004129 ... O78749 27654913
    361745 5j4z:BO (5.8) BS01 CUA 7.1.1.9 GO:0004129 ... O78750 27654913
    361746 5j4z:E (5.8) BS01 FES N/A N/A N/A 27654913
    361747 5j4z:F (5.8) BS01 SF4 N/A N/A N/A 27654913
    361748 5j4z:G (5.8) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    361749 5j4z:G (5.8) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    361750 5j4z:G (5.8) BS03 FES N/A GO:0016020 ... N/A 27654913
    361751 5j4z:H (5.8) BS01 peptide N/A N/A N/A 27654913
    361752 5j4z:I (5.8) BS01 SF4 N/A N/A N/A 27654913
    361753 5j4z:I (5.8) BS02 SF4 N/A N/A N/A 27654913
    361754 5j50:A (2.05) BS01 peptide ? GO:0019862 ... P18670 N/A
    361755 5j50:A (2.05) BS02 peptide ? GO:0019862 ... P18670 N/A
    361756 5j50:A (2.05) BS03 peptide ? GO:0019862 ... P18670 N/A
    361757 5j50:A (2.05) BS04 NPO ? GO:0019862 ... P18670 N/A
    361758 5j50:C (2.05) BS01 peptide ? GO:0019862 ... P18670 N/A
    361759 5j50:C (2.05) BS02 peptide ? GO:0019862 ... P18670 N/A
    361760 5j50:C (2.05) BS03 peptide ? GO:0019862 ... P18670 N/A
    361761 5j50:C (2.05) BS04 NPO ? GO:0019862 ... P18670 N/A
    361762 5j50:E (2.05) BS01 peptide ? GO:0019862 ... P18670 N/A
    361763 5j50:E (2.05) BS02 peptide ? GO:0019862 ... P18670 N/A
    361764 5j50:E (2.05) BS03 peptide ? GO:0019862 ... P18670 N/A
    361765 5j50:E (2.05) BS04 NPO ? GO:0019862 ... P18670 N/A
    361766 5j50:G (2.05) BS01 peptide ? GO:0019862 ... P18670 N/A
    361767 5j50:G (2.05) BS02 peptide ? GO:0019862 ... P18670 N/A
    361768 5j50:G (2.05) BS03 peptide ? GO:0019862 ... P18670 N/A
    361769 5j50:G (2.05) BS04 NPO ? GO:0019862 ... P18670 N/A
    361770 5j51:A (1.67) BS01 peptide ? GO:0019862 ... P18670 27808459
    361771 5j51:A (1.67) BS02 peptide ? GO:0019862 ... P18670 27808459
    361772 5j51:A (1.67) BS03 peptide ? GO:0019862 ... P18670 27808459
    361773 5j51:C (1.67) BS01 peptide ? GO:0019862 ... P18670 27808459
    361774 5j51:C (1.67) BS02 peptide ? GO:0019862 ... P18670 27808459
    361775 5j51:C (1.67) BS03 peptide ? GO:0019862 ... P18670 27808459
    361776 5j51:E (1.67) BS01 peptide ? GO:0019862 ... P18670 27808459
    361777 5j51:E (1.67) BS02 peptide ? GO:0019862 ... P18670 27808459
    361778 5j51:E (1.67) BS03 peptide ? GO:0019862 ... P18670 27808459
    361779 5j51:E (1.67) BS04 GLA ? GO:0019862 ... P18670 27808459
    361780 5j51:E (1.67) BS05 GLA ? GO:0019862 ... P18670 27808459
    361781 5j51:G (1.67) BS01 peptide ? GO:0019862 ... P18670 27808459
    361782 5j51:G (1.67) BS02 peptide ? GO:0019862 ... P18670 27808459
    361783 5j51:G (1.67) BS03 peptide ? GO:0019862 ... P18670 27808459
    361784 5j51:G (1.67) BS04 GLA ? GO:0019862 ... P18670 27808459
    361785 5j51:G (1.67) BS05 GLA ? GO:0019862 ... P18670 27808459
    361786 5j53:A (1.61) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361787 5j53:A (1.61) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361788 5j54:A (1.89) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361789 5j54:A (1.89) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361790 5j54:A (1.89) BS03 STL 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361791 5j55:A (1.75) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361792 5j55:A (1.75) BS02 OXY 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361793 5j55:A (1.75) BS03 V55 1.13.11.- GO:0010436 ... Q2GA76 27911781
    361794 5j58:A (2.8) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    361795 5j58:B (2.8) BS01 N56 6.1.1.10 GO:0000166 ... Q38C91 27788467
    361796 5j59:A (2.4) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    361797 5j59:B (2.4) BS01 N93 6.1.1.10 GO:0000166 ... Q38C91 27788467 MOAD: ic50<50nM
    361798 5j5a:A (2.7) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 27788467
    361799 5j5a:B (2.7) BS01 756 6.1.1.10 GO:0000166 ... Q38C91 27788467
    361800 5j5b:AB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 27382179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).