SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    361801 5j5b:AB (2.8) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    361802 5j5b:AC (2.8) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    361803 5j5b:AD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    361804 5j5b:AE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    361805 5j5b:AF (2.8) BS01 rna ? GO:0003735 ... P02358 27382179
    361806 5j5b:AG (2.8) BS01 rna ? GO:0003723 ... P02359 27382179
    361807 5j5b:AH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    361808 5j5b:AI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    361809 5j5b:AJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    361810 5j5b:AK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    361811 5j5b:AL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    361812 5j5b:AM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    361813 5j5b:AN (2.8) BS01 rna ? GO:0000028 ... P0AG59 27382179
    361814 5j5b:AO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    361815 5j5b:AO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    361816 5j5b:AP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    361817 5j5b:AQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 27382179
    361818 5j5b:AR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    361819 5j5b:AS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    361820 5j5b:AT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    361821 5j5b:AU (2.8) BS01 rna ? GO:0003735 ... P68679 27382179
    361822 5j5b:BB (2.8) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    361823 5j5b:BB (2.8) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    361824 5j5b:BC (2.8) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    361825 5j5b:BD (2.8) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    361826 5j5b:BD (2.8) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    361827 5j5b:BE (2.8) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    361828 5j5b:BF (2.8) BS01 rna ? GO:0003735 ... P02358 27382179
    361829 5j5b:BG (2.8) BS01 rna ? GO:0003723 ... P02359 27382179
    361830 5j5b:BH (2.8) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    361831 5j5b:BI (2.8) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    361832 5j5b:BJ (2.8) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    361833 5j5b:BK (2.8) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    361834 5j5b:BL (2.8) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    361835 5j5b:BM (2.8) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    361836 5j5b:BN (2.8) BS01 rna ? GO:0000028 ... P0AG59 27382179
    361837 5j5b:BO (2.8) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    361838 5j5b:BO (2.8) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    361839 5j5b:BP (2.8) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    361840 5j5b:BQ (2.8) BS01 rna ? GO:0000028 ... P0AG63 27382179
    361841 5j5b:BR (2.8) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    361842 5j5b:BS (2.8) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    361843 5j5b:BT (2.8) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    361844 5j5b:BU (2.8) BS01 rna ? GO:0003735 ... P68679 27382179
    361845 5j5b:C0 (2.8) BS01 rna ? GO:0000027 ... P0AG51 27382179
    361846 5j5b:C0 (2.8) BS02 rna ? GO:0000027 ... P0AG51 27382179
    361847 5j5b:C1 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    361848 5j5b:C2 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    361849 5j5b:C3 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    361850 5j5b:C4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    361851 5j5b:C5 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    361852 5j5b:C5 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    361853 5j5b:CC (2.8) BS01 rna ? GO:0000027 ... P60422 27382179
    361854 5j5b:CC (2.8) BS02 rna ? GO:0000027 ... P60422 27382179
    361855 5j5b:CD (2.8) BS01 rna ? GO:0000027 ... P60438 27382179
    361856 5j5b:CE (2.8) BS01 rna ? GO:0001070 ... P60723 27382179
    361857 5j5b:CF (2.8) BS01 rna ? GO:0000027 ... P62399 27382179
    361858 5j5b:CF (2.8) BS02 rna ? GO:0000027 ... P62399 27382179
    361859 5j5b:CG (2.8) BS01 rna ? GO:0000027 ... P0AG55 27382179
    361860 5j5b:CH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    361861 5j5b:CJ (2.8) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    361862 5j5b:CK (2.8) BS01 rna ? GO:0002181 ... P0AA10 27382179
    361863 5j5b:CL (2.8) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    361864 5j5b:CL (2.8) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    361865 5j5b:CM (2.8) BS01 rna ? GO:0002181 ... P02413 27382179
    361866 5j5b:CN (2.8) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    361867 5j5b:CN (2.8) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    361868 5j5b:CO (2.8) BS01 rna ? GO:0000027 ... P0AG44 27382179
    361869 5j5b:CP (2.8) BS01 rna ? GO:0002181 ... P0C018 27382179
    361870 5j5b:CP (2.8) BS02 rna ? GO:0002181 ... P0C018 27382179
    361871 5j5b:CQ (2.8) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    361872 5j5b:CQ (2.8) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    361873 5j5b:CR (2.8) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    361874 5j5b:CS (2.8) BS01 rna ? GO:0002181 ... P0AG48 27382179
    361875 5j5b:CT (2.8) BS01 rna ? GO:0002181 ... P61175 27382179
    361876 5j5b:CU (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    361877 5j5b:CV (2.8) BS01 rna ? GO:0000027 ... P60624 27382179
    361878 5j5b:CW (2.8) BS01 rna ? GO:0000027 ... P68919 27382179
    361879 5j5b:CW (2.8) BS02 rna ? GO:0000027 ... P68919 27382179
    361880 5j5b:CX (2.8) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    361881 5j5b:CX (2.8) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    361882 5j5b:CY (2.8) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    361883 5j5b:CZ (2.8) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    361884 5j5b:D0 (2.8) BS01 rna ? GO:0000027 ... P0AG51 27382179
    361885 5j5b:D1 (2.8) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    361886 5j5b:D2 (2.8) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    361887 5j5b:D3 (2.8) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    361888 5j5b:D4 (2.8) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    361889 5j5b:D5 (2.8) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    361890 5j5b:D5 (2.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    361891 5j5b:DC (2.8) BS01 rna ? GO:0000027 ... P60422 27382179
    361892 5j5b:DD (2.8) BS01 rna ? GO:0000027 ... P60438 27382179
    361893 5j5b:DE (2.8) BS01 rna ? GO:0001070 ... P60723 27382179
    361894 5j5b:DF (2.8) BS01 rna ? GO:0000027 ... P62399 27382179
    361895 5j5b:DF (2.8) BS02 rna ? GO:0000027 ... P62399 27382179
    361896 5j5b:DG (2.8) BS01 rna ? GO:0000027 ... P0AG55 27382179
    361897 5j5b:DH (2.8) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    361898 5j5b:DH (2.8) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    361899 5j5b:DI (2.8) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    361900 5j5b:DJ (2.8) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    361901 5j5b:DK (2.8) BS01 rna ? GO:0002181 ... P0AA10 27382179
    361902 5j5b:DL (2.8) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    361903 5j5b:DL (2.8) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    361904 5j5b:DM (2.8) BS01 rna ? GO:0002181 ... P02413 27382179
    361905 5j5b:DN (2.8) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    361906 5j5b:DN (2.8) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    361907 5j5b:DO (2.8) BS01 rna ? GO:0000027 ... P0AG44 27382179
    361908 5j5b:DP (2.8) BS01 rna ? GO:0002181 ... P0C018 27382179
    361909 5j5b:DP (2.8) BS02 rna ? GO:0002181 ... P0C018 27382179
    361910 5j5b:DQ (2.8) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    361911 5j5b:DQ (2.8) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    361912 5j5b:DR (2.8) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    361913 5j5b:DS (2.8) BS01 rna ? GO:0002181 ... P0AG48 27382179
    361914 5j5b:DT (2.8) BS01 rna ? GO:0002181 ... P61175 27382179
    361915 5j5b:DU (2.8) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    361916 5j5b:DV (2.8) BS01 rna ? GO:0000027 ... P60624 27382179
    361917 5j5b:DW (2.8) BS01 rna ? GO:0000027 ... P68919 27382179
    361918 5j5b:DW (2.8) BS02 rna ? GO:0000027 ... P68919 27382179
    361919 5j5b:DX (2.8) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    361920 5j5b:DX (2.8) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    361921 5j5b:DY (2.8) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    361922 5j5b:DZ (2.8) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    361923 5j5c:A (3.4) BS01 MG ? GO:0000139 ... P40616 27436755
    361924 5j5c:A (3.4) BS02 GTP ? GO:0000139 ... P40616 27436755
    361925 5j5d:A (2.4) BS01 6GT 4.3.3.7 GO:0005737 ... P9WP25 27501775
    361926 5j5f:A (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361927 5j5f:A (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361928 5j5f:B (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361929 5j5f:B (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361930 5j5f:C (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361931 5j5f:C (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361932 5j5f:D (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361933 5j5f:D (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361934 5j5f:E (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361935 5j5f:E (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361936 5j5f:F (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361937 5j5f:F (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361938 5j5f:G (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361939 5j5f:G (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361940 5j5f:H (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361941 5j5f:H (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361942 5j5f:I (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361943 5j5f:I (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361944 5j5f:J (2.04) BS01 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361945 5j5f:J (2.04) BS02 6GH ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.33uM
    361946 5j5g:A (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361947 5j5g:A (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361948 5j5g:B (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788
    361949 5j5g:B (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788
    361950 5j5g:C (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361951 5j5g:C (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361952 5j5g:D (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788
    361953 5j5g:D (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788
    361954 5j5g:E (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361955 5j5g:E (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361956 5j5g:F (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361957 5j5g:F (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361958 5j5g:G (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788
    361959 5j5g:G (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788
    361960 5j5g:H (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361961 5j5g:H (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361962 5j5g:I (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361963 5j5g:I (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361964 5j5g:J (2.036) BS01 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361965 5j5g:J (2.036) BS02 6GF ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.03uM
    361966 5j5h:A (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361967 5j5h:A (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361968 5j5h:B (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361969 5j5h:B (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361970 5j5h:C (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361971 5j5h:C (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361972 5j5h:D (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361973 5j5h:D (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361974 5j5h:E (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361975 5j5h:E (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361976 5j5h:F (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361977 5j5h:F (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361978 5j5h:G (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361979 5j5h:G (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361980 5j5h:H (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361981 5j5h:H (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361982 5j5h:I (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361983 5j5h:I (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361984 5j5h:J (2.7) BS01 6GK ? GO:0004888 ... P58154 28221788
    361985 5j5h:J (2.7) BS02 6GK ? GO:0004888 ... P58154 28221788
    361986 5j5i:A (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361987 5j5i:A (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361988 5j5i:B (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361989 5j5i:B (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361990 5j5i:C (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361991 5j5i:C (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361992 5j5i:D (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788
    361993 5j5i:D (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788
    361994 5j5i:E (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361995 5j5i:E (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361996 5j5i:F (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361997 5j5i:F (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361998 5j5i:G (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    361999 5j5i:G (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    362000 5j5i:H (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).