SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    362001 5j5i:H (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788
    362002 5j5i:I (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    362003 5j5i:I (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788 MOAD: Kd=0.13uM
    362004 5j5i:J (2.326) BS01 6GM ? GO:0004888 ... P58154 28221788
    362005 5j5i:J (2.326) BS02 6GM ? GO:0004888 ... P58154 28221788
    362006 5j5j:A (3.29) BS01 MAN ? GO:0005509 ... Q02487
    Q14126
    27298358
    362007 5j5j:A (3.29) BS02 MAN ? GO:0005509 ... Q02487
    Q14126
    27298358
    362008 5j5j:A (3.29) BS03 MAN ? GO:0005509 ... Q02487
    Q14126
    27298358
    362009 5j5j:A (3.29) BS04 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362010 5j5j:A (3.29) BS05 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362011 5j5j:A (3.29) BS06 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362012 5j5j:A (3.29) BS07 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362013 5j5j:A (3.29) BS08 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362014 5j5j:A (3.29) BS09 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362015 5j5j:A (3.29) BS10 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362016 5j5j:A (3.29) BS11 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362017 5j5j:A (3.29) BS12 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362018 5j5j:A (3.29) BS13 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362019 5j5j:A (3.29) BS14 CA ? GO:0005509 ... Q02487
    Q14126
    27298358
    362020 5j5k:A (1.95) BS01 MAN ? N/A Q4WZA5 N/A
    362021 5j5l:A (1.7) BS01 ACD ? N/A Q4WZA5 N/A
    362022 5j5n:A (2.629) BS01 GSH 2.5.1.18 GO:0004364 ... B9I0G5 N/A
    362023 5j5n:B (2.629) BS01 GSH 2.5.1.18 GO:0004364 ... B9I0G5 N/A
    362024 5j5o:A (1.867) BS01 6G0 ? GO:0003723 ... P63073 28666355 MOAD: Ka=102.8M^-1
    362025 5j5o:B (1.867) BS01 6G0 ? GO:0003723 ... P63073 28666355 MOAD: Ka=102.8M^-1
    362026 5j5o:C (1.867) BS01 6G0 ? GO:0003723 ... P63073 28666355 MOAD: Ka=102.8M^-1
    362027 5j5o:D (1.867) BS01 6G0 ? GO:0003723 ... P63073 28666355 MOAD: Ka=102.8M^-1
    362028 5j5p:A (1.97) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 29968711
    362029 5j5p:A (1.97) BS02 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362030 5j5p:B (1.97) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 29968711
    362031 5j5p:B (1.97) BS02 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362032 5j5q:A (2.83) BS01 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362033 5j5q:B (2.83) BS01 dna 5.6.2.2 GO:0003677 ... Q59961 29968711
    362034 5j5q:B (2.83) BS02 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362035 5j5q:C (2.83) BS01 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362036 5j5q:D (2.83) BS01 ANP 5.6.2.2 GO:0003677 ... Q59961 29968711
    362037 5j5r:A (1.6) BS01 6G1 1.1.1.205 GO:0003824 ... G7CNL4 27726334 MOAD: Ki=130nM
    362038 5j5r:A (1.6) BS02 IMP 1.1.1.205 GO:0003824 ... G7CNL4 27726334
    362039 5j5s:A (2.153) BS01 6G3 2.7.10.2 GO:0004672 ... P00523 N/A
    362040 5j5s:B (2.153) BS01 6G3 2.7.10.2 GO:0004672 ... P00523 N/A
    362041 5j5t:A (2.85) BS01 6G2 2.7.11.1 GO:0004672 ... Q8IVH8 27727493
    362042 5j5x:A (2.6) BS01 peptide 2.7.11.11 GO:0000287 ... P17612 27389935
    362043 5j5x:A (2.6) BS02 6J9 2.7.11.11 GO:0000287 ... P17612 27389935
    362044 5j5y:A (1.75) BS01 6G6 ? GO:0003723 ... P63073 28666355 MOAD: Ka=82.8M^-1
    362045 5j5y:B (1.75) BS01 6G6 ? GO:0003723 ... P63073 28666355 MOAD: Ka=82.8M^-1
    362046 5j5z:A (1.84) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    362047 5j5z:B (1.84) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    362048 5j60:A (1.9) BS01 FAD ? GO:0000166 ... Q7NMP6 27418374
    362049 5j60:A (1.9) BS02 FAD ? GO:0000166 ... Q7NMP6 27418374
    362050 5j60:B (1.9) BS01 FAD ? GO:0000166 ... Q7NMP6 27418374
    362051 5j60:C (1.9) BS01 FAD ? GO:0000166 ... Q7NMP6 27418374
    362052 5j60:D (1.9) BS01 FAD ? GO:0000166 ... Q7NMP6 27418374
    362053 5j60:D (1.9) BS02 FAD ? GO:0000166 ... Q7NMP6 27418374
    362054 5j61:A (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362055 5j61:A (2.1) BS02 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362056 5j61:B (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362057 5j61:C (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362058 5j61:D (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362059 5j61:D (2.1) BS02 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362060 5j61:E (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362061 5j61:F (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362062 5j61:G (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362063 5j61:H (2.1) BS01 A3G 3.1.1.96 GO:0000049 ... Q8IIS0 27224426
    362064 5j62:A (2.15) BS01 FMN N/A GO:0016491 ... N/A 27623089
    362065 5j62:A (2.15) BS02 FMN N/A GO:0016491 ... N/A 27623089
    362066 5j62:B (2.15) BS01 FMN N/A GO:0016491 ... N/A 27623089
    362067 5j62:B (2.15) BS02 FMN N/A GO:0016491 ... N/A 27623089
    362068 5j63:A (2.5) BS01 G3N N/A GO:0003824 ... N/A 27171345
    362069 5j63:A (2.5) BS02 FNX N/A GO:0003824 ... N/A 27171345
    362070 5j63:B (2.5) BS01 G3N N/A GO:0003824 ... N/A 27171345
    362071 5j63:B (2.5) BS02 FNX N/A GO:0003824 ... N/A 27171345
    362072 5j63:C (2.5) BS01 G3N N/A GO:0003824 ... N/A 27171345
    362073 5j63:C (2.5) BS02 FNX N/A GO:0003824 ... N/A 27171345
    362074 5j63:D (2.5) BS01 G3N N/A GO:0003824 ... N/A 27171345
    362075 5j63:D (2.5) BS02 FNX N/A GO:0003824 ... N/A 27171345
    362076 5j64:A (1.38) BS01 6G7 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362077 5j67:A (3.16) BS01 MAN ? GO:0001764 ... O75129 27249642
    362078 5j67:A (3.16) BS02 I3P ? GO:0001764 ... O75129 27249642
    362079 5j67:C (3.16) BS01 MAN ? GO:0001764 ... O75129 27249642
    362080 5j67:C (3.16) BS02 I3P ? GO:0001764 ... O75129 27249642
    362081 5j68:A (5.221) BS01 MAN ? GO:0001764 ... O75129 27249642
    362082 5j6a:A (2.045) BS01 P46 2.7.11.2 GO:0004672 ... Q15119 28085286 MOAD: Kd=22nM
    362083 5j6b:A (1.95) BS01 NDP ? GO:0000166 ... Q2T801 N/A
    362084 5j6b:B (1.95) BS01 NDP ? GO:0000166 ... Q2T801 N/A
    362085 5j6b:C (1.95) BS01 NDP ? GO:0000166 ... Q2T801 N/A
    362086 5j6b:D (1.95) BS01 NDP ? GO:0000166 ... Q2T801 N/A
    362087 5j6c:A (2.096) BS01 FMN N/A GO:0016491 ... N/A 27623089
    362088 5j6c:A (2.096) BS02 FMN N/A GO:0016491 ... N/A 27623089
    362089 5j6c:B (2.096) BS01 FMN N/A GO:0016491 ... N/A 27623089
    362090 5j6c:B (2.096) BS02 FMN N/A GO:0016491 ... N/A 27623089
    362091 5j6d:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    362092 5j6d:A (1.9) BS02 6H5 1.14.16.4 GO:0004497 ... P17752 27146606 MOAD: ic50=6nM
    362093 5j6d:B (1.9) BS01 6H5 1.14.16.4 GO:0004497 ... P17752 27146606 MOAD: ic50=6nM
    362094 5j6d:B (1.9) BS02 FE 1.14.16.4 GO:0004497 ... P17752 27146606
    362095 5j6d:B (1.9) BS03 6H5 1.14.16.4 GO:0004497 ... P17752 27146606 MOAD: ic50=6nM
    362096 5j6f:A (2.75) BS01 MN 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    362097 5j6f:A (2.75) BS02 PRE 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    362098 5j6f:B (2.75) BS01 MN 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    362099 5j6f:B (2.75) BS02 PRE 2.5.1.54
    5.4.99.5
    GO:0003849 ... L8A208 27502275
    362100 5j6g:A (3.3) BS01 peptide ? N/A P01898 27385590
    362101 5j6g:C (3.3) BS01 peptide ? N/A P01898 27385590
    362102 5j6h:A (2.3) BS01 peptide ? GO:0002474 ... P01898 27385590
    362103 5j6h:A (2.3) BS02 NCA ? GO:0002474 ... P01898 27385590
    362104 5j6l:A (1.75) BS01 6GC 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362105 5j6m:A (1.64) BS01 6FJ 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362106 5j6n:A (1.9) BS01 6FF 3.6.4.10 GO:0005524 ... P07900 29273709
    362107 5j6p:A (2.6) BS01 ZN ? N/A Q9P802 N/A
    362108 5j6p:B (2.6) BS01 ZN ? N/A Q9P802 N/A
    362109 5j6p:C (2.6) BS01 ZN ? N/A Q9P802 N/A
    362110 5j6s:A (2.8) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    362111 5j6s:A (2.8) BS02 6GA 3.4.11.- GO:0002250 ... Q6P179 28337326 BindingDB: IC50=>100000nM
    362112 5j6s:B (2.8) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    362113 5j6s:B (2.8) BS02 6GA 3.4.11.- GO:0002250 ... Q6P179 28337326 BindingDB: IC50=>100000nM
    362114 5j6y:A (1.03) BS01 CA ? N/A A1YIY3 28808685
    362115 5j6y:A (1.03) BS02 CA ? N/A A1YIY3 28808685
    362116 5j6y:A (1.03) BS03 CA ? N/A A1YIY3 28808685
    362117 5j6y:A (1.03) BS04 CA ? N/A A1YIY3 28808685
    362118 5j6y:A (1.03) BS05 CA ? N/A A1YIY3 28808685
    362119 5j6y:A (1.03) BS06 CA ? N/A A1YIY3 28808685
    362120 5j6y:A (1.03) BS07 GLC ? N/A A1YIY3 28808685
    362121 5j6y:A (1.03) BS08 BGC ? N/A A1YIY3 28808685
    362122 5j70:A (2.956) BS01 dna 3.6.4.- N/A P32657 N/A
    362123 5j70:A (2.956) BS02 dna 3.6.4.- N/A P32657 N/A
    362124 5j70:B (2.956) BS01 dna 3.6.4.- N/A P32657 N/A
    362125 5j70:B (2.956) BS02 dna 3.6.4.- N/A P32657 N/A
    362126 5j71:A (1.65) BS01 P35 2.7.11.2 GO:0004672 ... Q15119 28085286 BindingDB: Kd=110nM, IC50=195nM
    362127 5j72:A (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    362128 5j72:A (1.7) BS02 ZN 3.5.1.28 GO:0008745 ... Q183L9 28132783
    362129 5j72:B (1.7) BS01 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    362130 5j72:B (1.7) BS02 CA 3.5.1.28 GO:0008745 ... Q183L9 28132783
    362131 5j72:B (1.7) BS03 ZN 3.5.1.28 GO:0008745 ... Q183L9 28132783
    362132 5j74:A (2.7) BS01 6GN N/A N/A N/A 26442911
    362133 5j74:B (2.7) BS01 6GN N/A N/A N/A 26442911
    362134 5j75:A (2.0) BS01 6GQ N/A N/A N/A 26442911 MOAD: Ki=0.63nM
    362135 5j75:A (2.0) BS02 6GQ N/A N/A N/A 26442911 MOAD: Ki=0.63nM
    362136 5j75:B (2.0) BS01 6GQ N/A N/A N/A 26442911 MOAD: Ki=0.63nM
    362137 5j75:B (2.0) BS02 6GQ N/A N/A N/A 26442911 MOAD: Ki=0.63nM
    362138 5j79:A (2.69) BS01 6GE 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 27109867 BindingDB: IC50=20nM
    362139 5j79:B (2.69) BS01 6GE 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 27109867 BindingDB: IC50=20nM
    362140 5j7a:A (2.3) BS01 RET ? GO:0005216 ... P02945 27545823
    362141 5j7b:A (2.53) BS01 6GD 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 27109867
    362142 5j7b:B (2.53) BS01 6GD 2.7.10.2
    2.7.11.1
    GO:0004672 ... O43353 27109867
    362143 5j7f:A (2.0) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362144 5j7f:A (2.0) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362145 5j7f:B (2.0) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362146 5j7f:B (2.0) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362147 5j7f:C (2.0) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362148 5j7f:C (2.0) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362149 5j7f:D (2.0) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362150 5j7f:D (2.0) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362151 5j7g:A (1.85) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362152 5j7g:A (1.85) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362153 5j7g:B (1.85) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362154 5j7g:B (1.85) BS02 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362155 5j7g:C (1.85) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362156 5j7g:D (1.85) BS01 6GG 2.3.2.27 GO:0005634 ... Q00987 28482147 BindingDB: Ki=58nM
    362157 5j7i:B (4.0) BS01 APR N/A GO:0016491 ... N/A 27571338
    362158 5j7i:C (4.0) BS01 ADP N/A GO:0016491 ... N/A 27571338
    362159 5j7i:D (4.0) BS01 ADP N/A GO:0016491 ... N/A 27571338
    362160 5j7j:A (-1.00) BS01 peptide ? GO:0005102 ... P0DP33 29118000
    362161 5j7j:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 29118000
    362162 5j7j:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 29118000
    362163 5j7j:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 29118000
    362164 5j7j:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 29118000
    362165 5j7l:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362166 5j7l:AB (3.0) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    362167 5j7l:AC (3.0) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362168 5j7l:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362169 5j7l:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362170 5j7l:AF (3.0) BS01 rna ? GO:0003735 ... P02358 27382179
    362171 5j7l:AG (3.0) BS01 rna ? GO:0003723 ... P02359 27382179
    362172 5j7l:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362173 5j7l:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362174 5j7l:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362175 5j7l:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362176 5j7l:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362177 5j7l:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    362178 5j7l:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 27382179
    362179 5j7l:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    362180 5j7l:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362181 5j7l:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362182 5j7l:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362183 5j7l:AR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362184 5j7l:AS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362185 5j7l:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362186 5j7l:AU (3.0) BS01 rna ? GO:0003735 ... P68679 27382179
    362187 5j7l:BB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362188 5j7l:BB (3.0) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    362189 5j7l:BC (3.0) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362190 5j7l:BD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362191 5j7l:BD (3.0) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    362192 5j7l:BE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362193 5j7l:BF (3.0) BS01 rna ? GO:0003735 ... P02358 27382179
    362194 5j7l:BG (3.0) BS01 rna ? GO:0003723 ... P02359 27382179
    362195 5j7l:BH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362196 5j7l:BI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362197 5j7l:BJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362198 5j7l:BK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362199 5j7l:BL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362200 5j7l:BM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 27382179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).