SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    362401 5j88:BO (3.32) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362402 5j88:BP (3.32) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362403 5j88:BQ (3.32) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362404 5j88:BR (3.32) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362405 5j88:BS (3.32) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362406 5j88:BT (3.32) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362407 5j88:BU (3.32) BS01 rna ? GO:0003735 ... P68679 27382179
    362408 5j88:C0 (3.32) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362409 5j88:C0 (3.32) BS02 rna ? GO:0000027 ... P0AG51 27382179
    362410 5j88:C1 (3.32) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362411 5j88:C2 (3.32) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362412 5j88:C3 (3.32) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362413 5j88:C4 (3.32) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362414 5j88:C5 (3.32) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362415 5j88:C5 (3.32) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362416 5j88:CC (3.32) BS01 rna ? GO:0000027 ... P60422 27382179
    362417 5j88:CD (3.32) BS01 rna ? GO:0000027 ... P60438 27382179
    362418 5j88:CE (3.32) BS01 rna ? GO:0001070 ... P60723 27382179
    362419 5j88:CF (3.32) BS01 rna ? GO:0000027 ... P62399 27382179
    362420 5j88:CF (3.32) BS02 rna ? GO:0000027 ... P62399 27382179
    362421 5j88:CG (3.32) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362422 5j88:CH (3.32) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362423 5j88:CJ (3.32) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362424 5j88:CK (3.32) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362425 5j88:CL (3.32) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362426 5j88:CL (3.32) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362427 5j88:CM (3.32) BS01 rna ? GO:0002181 ... P02413 27382179
    362428 5j88:CN (3.32) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362429 5j88:CN (3.32) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362430 5j88:CO (3.32) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362431 5j88:CP (3.32) BS01 rna ? GO:0002181 ... P0C018 27382179
    362432 5j88:CP (3.32) BS02 rna ? GO:0002181 ... P0C018 27382179
    362433 5j88:CQ (3.32) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362434 5j88:CQ (3.32) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362435 5j88:CR (3.32) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362436 5j88:CS (3.32) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362437 5j88:CT (3.32) BS01 rna ? GO:0002181 ... P61175 27382179
    362438 5j88:CU (3.32) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362439 5j88:CV (3.32) BS01 rna ? GO:0000027 ... P60624 27382179
    362440 5j88:CW (3.32) BS01 rna ? GO:0000027 ... P68919 27382179
    362441 5j88:CW (3.32) BS02 rna ? GO:0000027 ... P68919 27382179
    362442 5j88:CX (3.32) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    362443 5j88:CX (3.32) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    362444 5j88:CY (3.32) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362445 5j88:CZ (3.32) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362446 5j88:D0 (3.32) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362447 5j88:D0 (3.32) BS02 rna ? GO:0000027 ... P0AG51 27382179
    362448 5j88:D1 (3.32) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362449 5j88:D2 (3.32) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362450 5j88:D3 (3.32) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362451 5j88:D4 (3.32) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362452 5j88:D5 (3.32) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362453 5j88:D5 (3.32) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362454 5j88:DC (3.32) BS01 rna ? GO:0000027 ... P60422 27382179
    362455 5j88:DD (3.32) BS01 rna ? GO:0000027 ... P60438 27382179
    362456 5j88:DE (3.32) BS01 rna ? GO:0001070 ... P60723 27382179
    362457 5j88:DF (3.32) BS01 rna ? GO:0000027 ... P62399 27382179
    362458 5j88:DF (3.32) BS02 rna ? GO:0000027 ... P62399 27382179
    362459 5j88:DG (3.32) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362460 5j88:DH (3.32) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362461 5j88:DH (3.32) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    362462 5j88:DI (3.32) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    362463 5j88:DJ (3.32) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362464 5j88:DK (3.32) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362465 5j88:DL (3.32) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362466 5j88:DL (3.32) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362467 5j88:DM (3.32) BS01 rna ? GO:0002181 ... P02413 27382179
    362468 5j88:DN (3.32) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362469 5j88:DN (3.32) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362470 5j88:DO (3.32) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362471 5j88:DP (3.32) BS01 rna ? GO:0002181 ... P0C018 27382179
    362472 5j88:DP (3.32) BS02 rna ? GO:0002181 ... P0C018 27382179
    362473 5j88:DQ (3.32) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362474 5j88:DQ (3.32) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362475 5j88:DR (3.32) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362476 5j88:DS (3.32) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362477 5j88:DT (3.32) BS01 rna ? GO:0002181 ... P61175 27382179
    362478 5j88:DU (3.32) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362479 5j88:DV (3.32) BS01 rna ? GO:0000027 ... P60624 27382179
    362480 5j88:DW (3.32) BS01 rna ? GO:0000027 ... P68919 27382179
    362481 5j88:DW (3.32) BS02 rna ? GO:0000027 ... P68919 27382179
    362482 5j88:DX (3.32) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    362483 5j88:DX (3.32) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    362484 5j88:DY (3.32) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362485 5j88:DZ (3.32) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362486 5j89:A (2.2) BS01 6GX ? N/A Q9NZQ7 27083005 BindingDB: IC50=18nM, EC50=>10000nM
    362487 5j89:B (2.2) BS01 6GX ? N/A Q9NZQ7 27083005 BindingDB: IC50=18nM, EC50=>10000nM
    362488 5j89:C (2.2) BS01 6GX ? N/A Q9NZQ7 27083005 BindingDB: IC50=18nM, EC50=>10000nM
    362489 5j89:D (2.2) BS01 6GX ? N/A Q9NZQ7 27083005 BindingDB: IC50=18nM, EC50=>10000nM
    362490 5j8a:AB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362491 5j8a:AB (3.1) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    362492 5j8a:AC (3.1) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362493 5j8a:AD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362494 5j8a:AE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362495 5j8a:AF (3.1) BS01 rna ? GO:0003735 ... P02358 27382179
    362496 5j8a:AG (3.1) BS01 rna ? GO:0003723 ... P02359 27382179
    362497 5j8a:AH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362498 5j8a:AI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362499 5j8a:AJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362500 5j8a:AK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362501 5j8a:AL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362502 5j8a:AM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    362503 5j8a:AN (3.1) BS01 rna ? GO:0000028 ... P0AG59 27382179
    362504 5j8a:AO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    362505 5j8a:AO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362506 5j8a:AP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362507 5j8a:AQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362508 5j8a:AR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362509 5j8a:AS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362510 5j8a:AT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362511 5j8a:AU (3.1) BS01 rna ? GO:0003735 ... P68679 27382179
    362512 5j8a:BB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362513 5j8a:BB (3.1) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    362514 5j8a:BC (3.1) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362515 5j8a:BD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362516 5j8a:BD (3.1) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    362517 5j8a:BE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362518 5j8a:BF (3.1) BS01 rna ? GO:0003735 ... P02358 27382179
    362519 5j8a:BG (3.1) BS01 rna ? GO:0003723 ... P02359 27382179
    362520 5j8a:BH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362521 5j8a:BI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362522 5j8a:BJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362523 5j8a:BK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362524 5j8a:BL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362525 5j8a:BM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    362526 5j8a:BN (3.1) BS01 rna ? GO:0000028 ... P0AG59 27382179
    362527 5j8a:BO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    362528 5j8a:BO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362529 5j8a:BP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362530 5j8a:BQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362531 5j8a:BR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362532 5j8a:BS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362533 5j8a:BT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362534 5j8a:BU (3.1) BS01 rna ? GO:0003735 ... P68679 27382179
    362535 5j8a:C0 (3.1) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362536 5j8a:C0 (3.1) BS02 rna ? GO:0000027 ... P0AG51 27382179
    362537 5j8a:C1 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362538 5j8a:C2 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362539 5j8a:C3 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362540 5j8a:C4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362541 5j8a:C5 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362542 5j8a:C5 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362543 5j8a:CC (3.1) BS01 rna ? GO:0000027 ... P60422 27382179
    362544 5j8a:CC (3.1) BS02 rna ? GO:0000027 ... P60422 27382179
    362545 5j8a:CD (3.1) BS01 rna ? GO:0000027 ... P60438 27382179
    362546 5j8a:CE (3.1) BS01 rna ? GO:0001070 ... P60723 27382179
    362547 5j8a:CF (3.1) BS01 rna ? GO:0000027 ... P62399 27382179
    362548 5j8a:CF (3.1) BS02 rna ? GO:0000027 ... P62399 27382179
    362549 5j8a:CG (3.1) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362550 5j8a:CH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362551 5j8a:CJ (3.1) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362552 5j8a:CK (3.1) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362553 5j8a:CL (3.1) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362554 5j8a:CL (3.1) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362555 5j8a:CM (3.1) BS01 rna ? GO:0002181 ... P02413 27382179
    362556 5j8a:CN (3.1) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362557 5j8a:CN (3.1) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362558 5j8a:CO (3.1) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362559 5j8a:CP (3.1) BS01 rna ? GO:0002181 ... P0C018 27382179
    362560 5j8a:CP (3.1) BS02 rna ? GO:0002181 ... P0C018 27382179
    362561 5j8a:CQ (3.1) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362562 5j8a:CQ (3.1) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362563 5j8a:CR (3.1) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362564 5j8a:CS (3.1) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362565 5j8a:CT (3.1) BS01 rna ? GO:0002181 ... P61175 27382179
    362566 5j8a:CU (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362567 5j8a:CV (3.1) BS01 rna ? GO:0000027 ... P60624 27382179
    362568 5j8a:CW (3.1) BS01 rna ? GO:0000027 ... P68919 27382179
    362569 5j8a:CW (3.1) BS02 rna ? GO:0000027 ... P68919 27382179
    362570 5j8a:CX (3.1) BS01 rna ? GO:0000027 ... P0A7L8 27382179
    362571 5j8a:CX (3.1) BS02 rna ? GO:0000027 ... P0A7L8 27382179
    362572 5j8a:CY (3.1) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362573 5j8a:CZ (3.1) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362574 5j8a:D0 (3.1) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362575 5j8a:D0 (3.1) BS02 rna ? GO:0000027 ... P0AG51 27382179
    362576 5j8a:D1 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362577 5j8a:D2 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362578 5j8a:D3 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362579 5j8a:D4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362580 5j8a:D5 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362581 5j8a:D5 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362582 5j8a:DC (3.1) BS01 rna ? GO:0000027 ... P60422 27382179
    362583 5j8a:DD (3.1) BS01 rna ? GO:0000027 ... P60438 27382179
    362584 5j8a:DE (3.1) BS01 rna ? GO:0001070 ... P60723 27382179
    362585 5j8a:DF (3.1) BS01 rna ? GO:0000027 ... P62399 27382179
    362586 5j8a:DF (3.1) BS02 rna ? GO:0000027 ... P62399 27382179
    362587 5j8a:DG (3.1) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362588 5j8a:DH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362589 5j8a:DH (3.1) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    362590 5j8a:DI (3.1) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    362591 5j8a:DJ (3.1) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362592 5j8a:DK (3.1) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362593 5j8a:DL (3.1) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362594 5j8a:DL (3.1) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362595 5j8a:DM (3.1) BS01 rna ? GO:0002181 ... P02413 27382179
    362596 5j8a:DN (3.1) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362597 5j8a:DN (3.1) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362598 5j8a:DO (3.1) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362599 5j8a:DP (3.1) BS01 rna ? GO:0002181 ... P0C018 27382179
    362600 5j8a:DP (3.1) BS02 rna ? GO:0002181 ... P0C018 27382179

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).