SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    362601 5j8a:DQ (3.1) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362602 5j8a:DQ (3.1) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362603 5j8a:DR (3.1) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362604 5j8a:DS (3.1) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362605 5j8a:DT (3.1) BS01 rna ? GO:0002181 ... P61175 27382179
    362606 5j8a:DU (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362607 5j8a:DV (3.1) BS01 rna ? GO:0000027 ... P60624 27382179
    362608 5j8a:DW (3.1) BS01 rna ? GO:0000027 ... P68919 27382179
    362609 5j8a:DW (3.1) BS02 rna ? GO:0000027 ... P68919 27382179
    362610 5j8a:DX (3.1) BS01 rna ? GO:0000027 ... P0A7L8 27382179
    362611 5j8a:DX (3.1) BS02 rna ? GO:0000027 ... P0A7L8 27382179
    362612 5j8a:DY (3.1) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362613 5j8a:DZ (3.1) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362614 5j8b:0 (2.6) BS01 rna ? GO:0003735 ... P60493 27092003
    362615 5j8b:0 (2.6) BS02 rna ? GO:0003735 ... P60493 27092003
    362616 5j8b:0 (2.6) BS03 MG ? GO:0003735 ... P60493 27092003
    362617 5j8b:1 (2.6) BS01 rna ? GO:0005840 ... P60494 27092003
    362618 5j8b:1 (2.6) BS02 rna ? GO:0005840 ... P60494 27092003
    362619 5j8b:1 (2.6) BS03 MG ? GO:0005840 ... P60494 27092003
    362620 5j8b:2 (2.6) BS01 rna ? GO:0005840 ... Q5SHP6 27092003
    362621 5j8b:3 (2.6) BS01 rna ? GO:0005840 ... Q5SHQ6 27092003
    362622 5j8b:3 (2.6) BS02 rna ? GO:0005840 ... Q5SHQ6 27092003
    362623 5j8b:4 (2.6) BS01 rna ? GO:0005840 ... Q5SJE1 27092003
    362624 5j8b:4 (2.6) BS02 ZN ? GO:0005840 ... Q5SJE1 27092003
    362625 5j8b:5 (2.6) BS01 rna ? GO:0005840 ... P80339 27092003
    362626 5j8b:5 (2.6) BS02 ZN ? GO:0005840 ... P80339 27092003
    362627 5j8b:6 (2.6) BS01 rna ? GO:0000049 ... P35871 27092003
    362628 5j8b:6 (2.6) BS02 rna ? GO:0000049 ... P35871 27092003
    362629 5j8b:6 (2.6) BS03 MG ? GO:0000049 ... P35871 27092003
    362630 5j8b:6 (2.6) BS04 ZN ? GO:0000049 ... P35871 27092003
    362631 5j8b:7 (2.6) BS01 rna ? GO:0005840 ... P80340 27092003
    362632 5j8b:7 (2.6) BS02 MG ? GO:0005840 ... P80340 27092003
    362633 5j8b:7 (2.6) BS03 MG ? GO:0005840 ... P80340 27092003
    362634 5j8b:8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 27092003
    362635 5j8b:9 (2.6) BS01 rna ? GO:0005737 ... Q5SHR2 27092003
    362636 5j8b:9 (2.6) BS02 ZN ? GO:0005737 ... Q5SHR2 27092003
    362637 5j8b:C (2.6) BS01 rna ? GO:0000049 ... P27150 27092003
    362638 5j8b:D (2.6) BS01 rna ? GO:0002181 ... P60405 27092003
    362639 5j8b:D (2.6) BS02 rna ? GO:0002181 ... P60405 27092003
    362640 5j8b:D (2.6) BS03 MG ? GO:0002181 ... P60405 27092003
    362641 5j8b:D (2.6) BS04 MG ? GO:0002181 ... P60405 27092003
    362642 5j8b:D (2.6) BS05 MG ? GO:0002181 ... P60405 27092003
    362643 5j8b:D (2.6) BS06 MG ? GO:0002181 ... P60405 27092003
    362644 5j8b:D (2.6) BS07 MG ? GO:0002181 ... P60405 27092003
    362645 5j8b:D (2.6) BS08 MG ? GO:0002181 ... P60405 27092003
    362646 5j8b:E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 27092003
    362647 5j8b:E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 27092003
    362648 5j8b:E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 27092003
    362649 5j8b:F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 27092003
    362650 5j8b:F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 27092003
    362651 5j8b:F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 27092003
    362652 5j8b:F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 27092003
    362653 5j8b:F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 27092003
    362654 5j8b:G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 27092003
    362655 5j8b:G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 27092003
    362656 5j8b:G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 27092003
    362657 5j8b:G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 27092003
    362658 5j8b:H (2.6) BS01 rna N/A N/A N/A 27092003
    362659 5j8b:J (2.6) BS01 rna ? GO:0005840 ... Q8VVE3 27092003
    362660 5j8b:K (2.6) BS01 rna ? GO:0003735 ... Q5SLP6 27092003
    362661 5j8b:N (2.6) BS01 rna ? GO:0003729 ... P60488 27092003
    362662 5j8b:N (2.6) BS02 MG ? GO:0003729 ... P60488 27092003
    362663 5j8b:O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 27092003
    362664 5j8b:O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 27092003
    362665 5j8b:P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 27092003
    362666 5j8b:P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 27092003
    362667 5j8b:Q (2.6) BS01 rna ? GO:0000049 ... P60489 27092003
    362668 5j8b:Q (2.6) BS02 rna ? GO:0000049 ... P60489 27092003
    362669 5j8b:Q (2.6) BS03 rna ? GO:0000049 ... P60489 27092003
    362670 5j8b:Q (2.6) BS04 MG ? GO:0000049 ... P60489 27092003
    362671 5j8b:Q (2.6) BS05 MG ? GO:0000049 ... P60489 27092003
    362672 5j8b:R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 27092003
    362673 5j8b:R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 27092003
    362674 5j8b:R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 27092003
    362675 5j8b:S (2.6) BS01 rna ? GO:0005737 ... Q5SHQ4 27092003
    362676 5j8b:S (2.6) BS02 rna ? GO:0005737 ... Q5SHQ4 27092003
    362677 5j8b:T (2.6) BS01 rna ? GO:0003735 ... P60490 27092003
    362678 5j8b:T (2.6) BS02 rna ? GO:0003735 ... P60490 27092003
    362679 5j8b:U (2.6) BS01 rna ? GO:0000027 ... P60491 27092003
    362680 5j8b:U (2.6) BS02 MG ? GO:0000027 ... P60491 27092003
    362681 5j8b:V (2.6) BS01 rna ? GO:0003735 ... P60492 27092003
    362682 5j8b:V (2.6) BS02 MG ? GO:0003735 ... P60492 27092003
    362683 5j8b:W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 27092003
    362684 5j8b:W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 27092003
    362685 5j8b:X (2.6) BS01 rna ? GO:0005840 ... Q5SHP0 27092003
    362686 5j8b:X (2.6) BS02 MG ? GO:0005840 ... Q5SHP0 27092003
    362687 5j8b:Y (2.6) BS01 rna ? GO:0005840 ... Q5SHP9 27092003
    362688 5j8b:Y (2.6) BS02 ZN ? GO:0005840 ... Q5SHP9 27092003
    362689 5j8b:Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 27092003
    362690 5j8b:b (2.6) BS01 rna ? GO:0003735 ... P80371 27092003
    362691 5j8b:c (2.6) BS01 rna ? GO:0003729 ... P80372 27092003
    362692 5j8b:d (2.6) BS01 rna ? GO:0003735 ... P80373 27092003
    362693 5j8b:d (2.6) BS02 SF4 ? GO:0003735 ... P80373 27092003
    362694 5j8b:e (2.6) BS01 rna ? GO:0005840 ... Q5SHQ5 27092003
    362695 5j8b:f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 27092003
    362696 5j8b:g (2.6) BS01 rna ? GO:0000049 ... P17291 27092003
    362697 5j8b:g (2.6) BS02 rna ? GO:0000049 ... P17291 27092003
    362698 5j8b:h (2.6) BS01 rna N/A N/A N/A 27092003
    362699 5j8b:i (2.6) BS01 rna ? GO:0000049 ... P80374 27092003
    362700 5j8b:i (2.6) BS02 rna ? GO:0000049 ... P80374 27092003
    362701 5j8b:j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 27092003
    362702 5j8b:k (2.6) BS01 rna ? GO:0005840 ... P80376 27092003
    362703 5j8b:k (2.6) BS02 MG ? GO:0005840 ... P80376 27092003
    362704 5j8b:l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 27092003
    362705 5j8b:l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 27092003
    362706 5j8b:l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 27092003
    362707 5j8b:m (2.6) BS01 rna ? GO:0000049 ... P80377 27092003
    362708 5j8b:m (2.6) BS02 MG ? GO:0000049 ... P80377 27092003
    362709 5j8b:n (2.6) BS01 rna N/A N/A N/A 27092003
    362710 5j8b:n (2.6) BS02 MG N/A N/A N/A 27092003
    362711 5j8b:n (2.6) BS03 ZN N/A N/A N/A 27092003
    362712 5j8b:o (2.6) BS01 rna ? GO:0005737 ... Q5SJ76 27092003
    362713 5j8b:o (2.6) BS02 rna ? GO:0005737 ... Q5SJ76 27092003
    362714 5j8b:p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 27092003
    362715 5j8b:q (2.6) BS01 rna N/A N/A N/A 27092003
    362716 5j8b:r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 27092003
    362717 5j8b:s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 27092003
    362718 5j8b:t (2.6) BS01 rna ? GO:0005840 ... P80380 27092003
    362719 5j8b:z (2.6) BS01 rna 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362720 5j8b:z (2.6) BS02 rna 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362721 5j8b:z (2.6) BS03 rna 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362722 5j8b:z (2.6) BS04 rna 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362723 5j8b:z (2.6) BS05 MG 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362724 5j8b:z (2.6) BS06 MG 3.6.5.-
    3.6.5.n1
    GO:0003746 ... Q5SKA7
    Q5SLQ1
    27092003
    362725 5j8c:A (2.17) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 27382063
    362726 5j8d:A (1.85) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362727 5j8d:A (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362728 5j8d:A (1.85) BS03 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362729 5j8d:A (1.85) BS04 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362730 5j8d:B (1.85) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362731 5j8d:B (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362732 5j8d:B (1.85) BS03 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362733 5j8d:B (1.85) BS04 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362734 5j8d:C (1.85) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362735 5j8d:C (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362736 5j8d:C (1.85) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362737 5j8d:C (1.85) BS04 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362738 5j8d:D (1.85) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362739 5j8d:D (1.85) BS02 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362740 5j8d:D (1.85) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362741 5j8d:D (1.85) BS04 DND 1.-.-.- GO:0005829 ... Q01234 28578873
    362742 5j8f:A (2.6) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 27382063
    362743 5j8g:A (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362744 5j8g:A (1.9) BS02 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362745 5j8g:A (1.9) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362746 5j8g:A (1.9) BS04 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362747 5j8g:B (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362748 5j8g:B (1.9) BS02 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362749 5j8g:B (1.9) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362750 5j8g:B (1.9) BS04 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362751 5j8g:C (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362752 5j8g:C (1.9) BS02 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362753 5j8g:C (1.9) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362754 5j8g:D (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362755 5j8g:D (1.9) BS02 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362756 5j8g:D (1.9) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 28578873
    362757 5j8g:D (1.9) BS04 4NB 1.-.-.- GO:0005829 ... Q01234 28578873
    362758 5j8h:A (-1.00) BS01 peptide ? GO:0000086 ... P0DP23 27499441
    362759 5j8h:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 27499441
    362760 5j8h:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 27499441
    362761 5j8i:A (2.404) BS01 6H4 2.7.11.25 GO:0004672 ... O43318
    Q15750
    28011204
    362762 5j8k:AC (7.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    362763 5j8k:AC (7.8) BS02 HEM ? GO:0005739 ... P24959 27654913
    362764 5j8k:AD (7.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    362765 5j8k:AE (7.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    362766 5j8k:AN (7.8) BS01 HEM ? GO:0005739 ... P24959 27654913
    362767 5j8k:AO (7.8) BS01 HEM N/A GO:0009055 ... N/A 27654913
    362768 5j8k:AP (7.8) BS01 FES N/A GO:0008121 ... N/A 27654913
    362769 5j8k:B (7.8) BS01 SF4 N/A N/A N/A 27654913
    362770 5j8k:E (7.8) BS01 FES N/A N/A N/A 27654913
    362771 5j8k:F (7.8) BS01 SF4 N/A N/A N/A 27654913
    362772 5j8k:G (7.8) BS01 SF4 N/A GO:0016020 ... N/A 27654913
    362773 5j8k:G (7.8) BS02 SF4 N/A GO:0016020 ... N/A 27654913
    362774 5j8k:G (7.8) BS03 FES N/A GO:0016020 ... N/A 27654913
    362775 5j8k:H (7.8) BS01 peptide N/A N/A N/A 27654913
    362776 5j8k:I (7.8) BS01 SF4 N/A N/A N/A 27654913
    362777 5j8k:I (7.8) BS02 SF4 N/A N/A N/A 27654913
    362778 5j8l:A (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    362779 5j8l:A (1.73) BS02 TGJ 5.1.3.31 GO:0016853 ... O50580 27368739
    362780 5j8l:A (1.73) BS03 TGJ 5.1.3.31 GO:0016853 ... O50580 27368739
    362781 5j8l:A (1.73) BS04 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362782 5j8l:A (1.73) BS05 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362783 5j8l:B (1.73) BS01 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362784 5j8l:B (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    362785 5j8l:B (1.73) BS03 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362786 5j8l:B (1.73) BS04 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362787 5j8l:C (1.73) BS01 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    362788 5j8l:C (1.73) BS02 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362789 5j8l:C (1.73) BS03 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362790 5j8l:C (1.73) BS04 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362791 5j8l:D (1.73) BS01 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362792 5j8l:D (1.73) BS02 MN 5.1.3.31 GO:0016853 ... O50580 27368739
    362793 5j8l:D (1.73) BS03 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362794 5j8l:D (1.73) BS04 TGK 5.1.3.31 GO:0016853 ... O50580 27368739
    362795 5j8m:A (1.9) BS01 6DL 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362796 5j8m:B (1.9) BS01 6DL 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362797 5j8n:A (1.44) BS01 MG 3.1.11.2 GO:0003677 ... Q8PSD1 N/A
    362798 5j8o:A (2.3) BS01 6GZ ? N/A Q9NZQ7 27083005 BindingDB: IC50=146nM
    362799 5j8o:B (2.3) BS01 6GZ ? N/A Q9NZQ7 27083005 BindingDB: IC50=146nM
    362800 5j8p:A (1.554) BS01 MG ? N/A P62987 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).