SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    362801 5j8q:A (1.702) BS01 PLP 2.8.1.7 GO:0005515 ... O32164 27382962
    362802 5j8q:A (1.702) BS02 ALA 2.8.1.7 GO:0005515 ... O32164 27382962
    362803 5j8s:A (1.5) BS01 MG 1.16.3.1 GO:0004322 ... P07798 27650996
    362804 5j8t:A (-1.00) BS01 CA N/A N/A N/A N/A
    362805 5j8u:A (1.75) BS01 6DL 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362806 5j8u:B (1.75) BS01 6DL 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362807 5j8w:A (1.11) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362808 5j8x:A (2.53) BS01 OK3 3.4.16.4
    3.5.2.6
    GO:0000270 ... P0AEB2 27499424
    362809 5j8z:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27316543
    362810 5j8z:A (1.7) BS02 FC4 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27316543 MOAD: Ki=5nM
    362811 5j8z:A (1.7) BS03 6KE 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27316543 MOAD: Ki=5nM
    BindingDB: Ki=5.0nM
    362812 5j91:AB (2.96) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362813 5j91:AB (2.96) BS02 ZN ? GO:0000028 ... P0A7V0 27382179
    362814 5j91:AC (2.96) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362815 5j91:AD (2.96) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362816 5j91:AE (2.96) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362817 5j91:AF (2.96) BS01 rna ? GO:0003735 ... P02358 27382179
    362818 5j91:AG (2.96) BS01 rna ? GO:0003723 ... P02359 27382179
    362819 5j91:AH (2.96) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362820 5j91:AI (2.96) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362821 5j91:AJ (2.96) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362822 5j91:AK (2.96) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362823 5j91:AL (2.96) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362824 5j91:AM (2.96) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    362825 5j91:AN (2.96) BS01 rna ? GO:0000028 ... P0AG59 27382179
    362826 5j91:AO (2.96) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    362827 5j91:AO (2.96) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362828 5j91:AP (2.96) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362829 5j91:AQ (2.96) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362830 5j91:AR (2.96) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362831 5j91:AS (2.96) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362832 5j91:AT (2.96) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362833 5j91:AU (2.96) BS01 rna ? GO:0003735 ... P68679 27382179
    362834 5j91:BB (2.96) BS01 rna ? GO:0000028 ... P0A7V0 27382179
    362835 5j91:BB (2.96) BS02 rna ? GO:0000028 ... P0A7V0 27382179
    362836 5j91:BC (2.96) BS01 rna ? GO:0003676 ... P0A7V3 27382179
    362837 5j91:BD (2.96) BS01 rna ? GO:0000028 ... P0A7V8 27382179
    362838 5j91:BD (2.96) BS02 rna ? GO:0000028 ... P0A7V8 27382179
    362839 5j91:BE (2.96) BS01 rna ? GO:0000028 ... P0A7W1 27382179
    362840 5j91:BF (2.96) BS01 rna ? GO:0003735 ... P02358 27382179
    362841 5j91:BG (2.96) BS01 rna ? GO:0003723 ... P02359 27382179
    362842 5j91:BH (2.96) BS01 rna ? GO:0000028 ... P0A7W7 27382179
    362843 5j91:BI (2.96) BS01 rna ? GO:0000049 ... P0A7X3 27382179
    362844 5j91:BJ (2.96) BS01 rna ? GO:0000049 ... P0A7R5 27382179
    362845 5j91:BK (2.96) BS01 rna ? GO:0002181 ... P0A7R9 27382179
    362846 5j91:BL (2.96) BS01 rna ? GO:0000049 ... P0A7S3 27382179
    362847 5j91:BM (2.96) BS01 rna ? GO:0000049 ... P0A7S9 27382179
    362848 5j91:BN (2.96) BS01 rna ? GO:0000028 ... P0AG59 27382179
    362849 5j91:BO (2.96) BS01 rna ? GO:0000028 ... P0ADZ4 27382179
    362850 5j91:BO (2.96) BS02 rna ? GO:0000028 ... P0ADZ4 27382179
    362851 5j91:BP (2.96) BS01 rna ? GO:0000028 ... P0A7T3 27382179
    362852 5j91:BQ (2.96) BS01 rna ? GO:0000028 ... P0AG63 27382179
    362853 5j91:BR (2.96) BS01 rna ? GO:0003735 ... P0A7T7 27382179
    362854 5j91:BS (2.96) BS01 rna ? GO:0003723 ... P0A7U3 27382179
    362855 5j91:BT (2.96) BS01 rna ? GO:0000028 ... P0A7U7 27382179
    362856 5j91:BU (2.96) BS01 rna ? GO:0003735 ... P68679 27382179
    362857 5j91:C0 (2.96) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362858 5j91:C0 (2.96) BS02 rna ? GO:0000027 ... P0AG51 27382179
    362859 5j91:C1 (2.96) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362860 5j91:C2 (2.96) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362861 5j91:C3 (2.96) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362862 5j91:C4 (2.96) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362863 5j91:C5 (2.96) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362864 5j91:C5 (2.96) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362865 5j91:CC (2.96) BS01 rna ? GO:0000027 ... P60422 27382179
    362866 5j91:CD (2.96) BS01 rna ? GO:0000027 ... P60438 27382179
    362867 5j91:CE (2.96) BS01 rna ? GO:0001070 ... P60723 27382179
    362868 5j91:CF (2.96) BS01 rna ? GO:0000027 ... P62399 27382179
    362869 5j91:CF (2.96) BS02 rna ? GO:0000027 ... P62399 27382179
    362870 5j91:CG (2.96) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362871 5j91:CH (2.96) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362872 5j91:CJ (2.96) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362873 5j91:CK (2.96) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362874 5j91:CL (2.96) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362875 5j91:CL (2.96) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362876 5j91:CM (2.96) BS01 rna ? GO:0002181 ... P02413 27382179
    362877 5j91:CN (2.96) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362878 5j91:CN (2.96) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362879 5j91:CO (2.96) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362880 5j91:CP (2.96) BS01 rna ? GO:0002181 ... P0C018 27382179
    362881 5j91:CP (2.96) BS02 rna ? GO:0002181 ... P0C018 27382179
    362882 5j91:CQ (2.96) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362883 5j91:CQ (2.96) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362884 5j91:CR (2.96) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362885 5j91:CS (2.96) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362886 5j91:CT (2.96) BS01 rna ? GO:0002181 ... P61175 27382179
    362887 5j91:CU (2.96) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362888 5j91:CV (2.96) BS01 rna ? GO:0000027 ... P60624 27382179
    362889 5j91:CW (2.96) BS01 rna ? GO:0000027 ... P68919 27382179
    362890 5j91:CW (2.96) BS02 rna ? GO:0000027 ... P68919 27382179
    362891 5j91:CX (2.96) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    362892 5j91:CX (2.96) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    362893 5j91:CY (2.96) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362894 5j91:CZ (2.96) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362895 5j91:D0 (2.96) BS01 rna ? GO:0000027 ... P0AG51 27382179
    362896 5j91:D1 (2.96) BS01 rna ? GO:0000027 ... P0A7N4 27382179
    362897 5j91:D2 (2.96) BS01 rna ? GO:0000027 ... P0A7N9 27382179
    362898 5j91:D3 (2.96) BS01 rna ? GO:0002181 ... P0A7P5 27382179
    362899 5j91:D4 (2.96) BS01 rna ? GO:0002181 ... P0A7Q1 27382179
    362900 5j91:D5 (2.96) BS01 rna ? GO:0002181 ... P0A7Q6 27382179
    362901 5j91:D5 (2.96) BS02 ZN ? GO:0002181 ... P0A7Q6 27382179
    362902 5j91:DC (2.96) BS01 rna ? GO:0000027 ... P60422 27382179
    362903 5j91:DD (2.96) BS01 rna ? GO:0000027 ... P60438 27382179
    362904 5j91:DE (2.96) BS01 rna ? GO:0001070 ... P60723 27382179
    362905 5j91:DF (2.96) BS01 rna ? GO:0000027 ... P62399 27382179
    362906 5j91:DF (2.96) BS02 rna ? GO:0000027 ... P62399 27382179
    362907 5j91:DG (2.96) BS01 rna ? GO:0000027 ... P0AG55 27382179
    362908 5j91:DH (2.96) BS01 rna ? GO:0002181 ... P0A7R1 27382179
    362909 5j91:DH (2.96) BS02 rna ? GO:0002181 ... P0A7R1 27382179
    362910 5j91:DI (2.96) BS01 rna ? GO:0003735 ... P0A7J3 27382179
    362911 5j91:DJ (2.96) BS01 rna ? GO:0000027 ... P0A7J7 27382179
    362912 5j91:DK (2.96) BS01 rna ? GO:0002181 ... P0AA10 27382179
    362913 5j91:DL (2.96) BS01 rna ? GO:0002181 ... P0ADY3 27382179
    362914 5j91:DL (2.96) BS02 rna ? GO:0002181 ... P0ADY3 27382179
    362915 5j91:DM (2.96) BS01 rna ? GO:0002181 ... P02413 27382179
    362916 5j91:DN (2.96) BS01 rna ? GO:0000027 ... P0ADY7 27382179
    362917 5j91:DN (2.96) BS02 rna ? GO:0000027 ... P0ADY7 27382179
    362918 5j91:DO (2.96) BS01 rna ? GO:0000027 ... P0AG44 27382179
    362919 5j91:DP (2.96) BS01 rna ? GO:0002181 ... P0C018 27382179
    362920 5j91:DP (2.96) BS02 rna ? GO:0002181 ... P0C018 27382179
    362921 5j91:DQ (2.96) BS01 rna ? GO:0000027 ... P0A7K6 27382179
    362922 5j91:DQ (2.96) BS02 rna ? GO:0000027 ... P0A7K6 27382179
    362923 5j91:DR (2.96) BS01 rna ? GO:0000027 ... P0A7L3 27382179
    362924 5j91:DS (2.96) BS01 rna ? GO:0002181 ... P0AG48 27382179
    362925 5j91:DT (2.96) BS01 rna ? GO:0002181 ... P61175 27382179
    362926 5j91:DU (2.96) BS01 rna ? GO:0000027 ... P0ADZ0 27382179
    362927 5j91:DV (2.96) BS01 rna ? GO:0000027 ... P60624 27382179
    362928 5j91:DW (2.96) BS01 rna ? GO:0000027 ... P68919 27382179
    362929 5j91:DW (2.96) BS02 rna ? GO:0000027 ... P68919 27382179
    362930 5j91:DX (2.96) BS01 rna ? GO:0003735 ... P0A7L8 27382179
    362931 5j91:DX (2.96) BS02 rna ? GO:0003735 ... P0A7L8 27382179
    362932 5j91:DY (2.96) BS01 rna ? GO:0000027 ... P0A7M2 27382179
    362933 5j91:DZ (2.96) BS01 rna ? GO:0000027 ... P0A7M6 27382179
    362934 5j92:A (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    362935 5j92:B (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    362936 5j92:C (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    362937 5j92:D (1.95) BS01 FE2 1.14.11.- GO:0016491 ... Q13Q05 N/A
    362938 5j93:A (1.1) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362939 5j93:A (1.1) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362940 5j94:A (2.22002) BS01 1XF 3.4.22.38 GO:0006508 ... P43235 24518821 BindingDB: IC50=80000nM
    362941 5j95:A (2.5) BS01 6HH 2.7.11.1 GO:0004672 ... O95819 N/A
    362942 5j99:A (1.7) BS01 ADP 2.7.3.3 GO:0003824 ... P51541 27594681
    362943 5j99:A (1.7) BS02 ARG 2.7.3.3 GO:0003824 ... P51541 27594681
    362944 5j9a:A (1.997) BS01 ARG 2.7.3.3 GO:0003824 ... P51541 27594681
    362945 5j9a:A (1.997) BS02 ADP 2.7.3.3 GO:0003824 ... P51541 27594681
    362946 5j9f:A (2.1) BS01 GAR 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 27458733
    362947 5j9f:A (2.1) BS02 83A 2.1.2.2
    6.3.3.1
    6.3.4.13
    GO:0004644 ... P22102 27458733 MOAD: Ki=59nM
    BindingDB: IC50=666nM, Ki=59nM
    362948 5j9k:A (2.55) BS01 peptide ? GO:0006355 ... Q5NBT9 28630893
    362949 5j9k:A (2.55) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    362950 5j9k:B (2.55) BS01 peptide ? GO:0006355 ... Q5NBT9 28630893
    362951 5j9k:B (2.55) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    362952 5j9l:A (2.7515) BS01 6HF 2.7.11.25 GO:0004672 ... O43318
    Q15750
    28011204
    362953 5j9m:A (1.33) BS01 6HD 2.4.2.29 GO:0002099 ... P28720 N/A
    362954 5j9m:A (1.33) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    362955 5j9n:A (1.64) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    362956 5j9n:A (1.64) BS02 6H9 2.4.2.29 GO:0002099 ... P28720 N/A
    362957 5j9o:A (1.41) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    362958 5j9o:A (1.41) BS02 6H8 2.4.2.29 GO:0002099 ... P28720 N/A
    362959 5j9q:A (3.25) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 27594449
    362960 5j9q:E (3.25) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 27594449
    362961 5j9q:I (3.25) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 27594449
    362962 5j9s:A (2.702) BS01 peptide ? N/A Q03111 28241141
    362963 5j9v:A (1.16) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362964 5j9v:A (1.16) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362965 5j9w:E (2.8) BS01 ACO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 27594449
    362966 5j9w:I (2.8) BS01 ACO 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 27594449
    362967 5j9x:A (1.8) BS01 6GC 3.6.4.10 GO:0005524 ... P07900 29273709 MOAD: Kd=0.000000064M
    362968 5j9y:A (2.8) BS01 6HL 2.7.10.1 GO:0004672 ... P00533 27496389 BindingDB: IC50=60nM
    362969 5j9z:A (2.5) BS01 6HJ 2.7.10.1 GO:0004672 ... P00533 27496389 BindingDB: IC50=35nM
    362970 5ja0:F (1.9) BS01 PO4 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 28098152
    362971 5ja0:F (1.9) BS02 FPP 2.5.1.1
    2.5.1.10
    GO:0004659 ... P14324 28098152 MOAD: Kd=5.3uM
    362972 5ja1:A (3.0) BS01 75C 6.2.1.72
    6.3.2.14
    GO:0003824 ... P11454 27597544
    362973 5ja2:A (3.0) BS01 75C 6.2.1.72
    6.3.2.14
    GO:0003824 ... P11454 27597544
    362974 5ja2:A (3.0) BS02 BU9 6.2.1.72
    6.3.2.14
    GO:0003824 ... P11454 27597544
    362975 5ja2:A (3.0) BS03 BU9 6.2.1.72
    6.3.2.14
    GO:0003824 ... P11454 27597544
    362976 5ja3:A (1.814) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 27580226
    362977 5ja3:A (1.814) BS02 U06 1.5.1.3 GO:0004146 ... P9WNX1 27580226 MOAD: ic50=173nM
    362978 5ja3:B (1.814) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 27580226
    362979 5ja3:B (1.814) BS02 U06 1.5.1.3 GO:0004146 ... P9WNX1 27580226 MOAD: ic50=173nM
    362980 5ja3:C (1.814) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 27580226
    362981 5ja3:C (1.814) BS02 U06 1.5.1.3 GO:0004146 ... P9WNX1 27580226 MOAD: ic50=173nM
    362982 5ja3:D (1.814) BS01 NDP 1.5.1.3 GO:0004146 ... P9WNX1 27580226
    362983 5ja3:D (1.814) BS02 U06 1.5.1.3 GO:0004146 ... P9WNX1 27580226 MOAD: ic50=173nM
    362984 5ja5:A (2.0) BS01 peptide ? GO:0006355 ... Q5NBT9 28630893
    362985 5ja5:A (2.0) BS02 ZN ? GO:0006355 ... Q5NBT9 28630893
    362986 5ja7:A (1.61) BS01 6HM 3.4.22.38 GO:0006508 ... P43235 27859061
    362987 5ja7:B (1.61) BS01 6HM 3.4.22.38 GO:0006508 ... P43235 27859061
    362988 5ja8:C (2.49) BS01 PDO ? GO:0003674 ... Q9KMA6 28334932
    362989 5ja8:D (2.49) BS01 PDO N/A N/A N/A 28334932
    362990 5jab:A (1.65) BS01 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362991 5jab:A (1.65) BS02 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362992 5jab:B (1.65) BS01 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362993 5jab:B (1.65) BS02 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362994 5jab:C (1.65) BS01 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362995 5jab:C (1.65) BS02 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362996 5jab:D (1.65) BS01 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362997 5jab:D (1.65) BS02 6J4 1.3.98.- GO:0005515 ... P9WLL7 27364382
    362998 5jac:A (1.18) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    362999 5jac:A (1.18) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 27650996
    363000 5jad:A (2.05) BS01 FB2 3.1.1.47 GO:0003847 ... Q13093 27167608 MOAD: Kd=3.4mM
    BindingDB: IC50=>1000000nM, Kd=3400000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).