SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    363401 5jcs:D (9.5) BS01 rna ? GO:0000027 ... P26321 26619264
    363402 5jcs:D (9.5) BS02 rna ? GO:0000027 ... P26321 26619264
    363403 5jcs:E (9.5) BS01 rna ? GO:0000027 ... Q02326 26619264
    363404 5jcs:F (9.5) BS01 rna ? GO:0000463 ... P05737 26619264
    363405 5jcs:G (9.5) BS01 rna ? GO:0000470 ... P17076 26619264
    363406 5jcs:G (9.5) BS02 rna ? GO:0000470 ... P17076 26619264
    363407 5jcs:H (9.5) BS01 rna ? GO:0002181 ... P05738 26619264
    363408 5jcs:I (9.5) BS01 rna ? GO:0000055 ... P0CX43 26619264
    363409 5jcs:J (9.5) BS01 rna ? GO:0000027 ... P0C0W9 26619264
    363410 5jcs:J (9.5) BS02 rna ? GO:0000027 ... P0C0W9 26619264
    363411 5jcs:K (9.5) BS01 rna ? GO:0000027 ... P0CX53 26619264
    363412 5jcs:L (9.5) BS01 rna ? GO:0002181 ... Q12690 26619264
    363413 5jcs:L (9.5) BS02 rna ? GO:0002181 ... Q12690 26619264
    363414 5jcs:M (9.5) BS01 rna ? GO:0000027 ... P36105 26619264
    363415 5jcs:N (9.5) BS01 rna ? GO:0002181 ... P05748 26619264
    363416 5jcs:N (9.5) BS02 rna ? GO:0002181 ... P05748 26619264
    363417 5jcs:O (9.5) BS01 rna ? GO:0000470 ... P26784 26619264
    363418 5jcs:P (9.5) BS01 rna ? GO:0000448 ... P05740 26619264
    363419 5jcs:P (9.5) BS02 rna ? GO:0000448 ... P05740 26619264
    363420 5jcs:Q (9.5) BS01 rna ? GO:0002181 ... P0CX49 26619264
    363421 5jcs:R (9.5) BS01 rna ? GO:0002181 ... P0CX82 26619264
    363422 5jcs:S (9.5) BS01 rna ? GO:0002181 ... P0CX23 26619264
    363423 5jcs:S (9.5) BS02 rna ? GO:0002181 ... P0CX23 26619264
    363424 5jcs:T (9.5) BS01 rna ? GO:0002181 ... Q02753 26619264
    363425 5jcs:V (9.5) BS01 rna ? GO:0002181 ... P0CX41 26619264
    363426 5jcs:X (9.5) BS01 rna ? GO:0000027 ... P04456 26619264
    363427 5jcs:X (9.5) BS02 rna ? GO:0000027 ... P04456 26619264
    363428 5jcs:Y (9.5) BS01 rna ? GO:0002181 ... P05743 26619264
    363429 5jcs:Y (9.5) BS02 rna ? GO:0002181 ... P05743 26619264
    363430 5jcs:Z (9.5) BS01 rna ? GO:0002181 ... P0C2H6 26619264
    363431 5jcs:a (9.5) BS01 rna ? GO:0002181 ... P02406 26619264
    363432 5jcs:c (9.5) BS01 rna ? GO:0002181 ... P14120 26619264
    363433 5jcs:d (9.5) BS01 rna ? GO:0002181 ... P0C2H8 26619264
    363434 5jcs:e (9.5) BS01 rna ? GO:0002181 ... P38061 26619264
    363435 5jcs:f (9.5) BS01 rna ? GO:0000027 ... P05744 26619264
    363436 5jcs:g (9.5) BS01 rna ? GO:0002181 ... P87262 26619264
    363437 5jcs:h (9.5) BS01 rna ? GO:0000463 ... P0CX84 26619264
    363438 5jcs:h (9.5) BS02 rna ? GO:0000463 ... P0CX84 26619264
    363439 5jcs:i (9.5) BS01 rna ? GO:0002181 ... P05745 26619264
    363440 5jcs:j (9.5) BS01 rna ? GO:0000448 ... P49166 26619264
    363441 5jcs:j (9.5) BS02 rna ? GO:0000448 ... P49166 26619264
    363442 5jcs:k (9.5) BS01 rna ? GO:0002181 ... P49167 26619264
    363443 5jcs:l (9.5) BS01 rna ? GO:0002181 ... P04650 26619264
    363444 5jcs:l (9.5) BS02 rna ? GO:0002181 ... P04650 26619264
    363445 5jcs:n (9.5) BS01 rna ? GO:0000027 ... P33201 26619264
    363446 5jcs:o (9.5) BS01 rna ? GO:0000054 ... Q02892 26619264
    363447 5jcs:p (9.5) BS01 rna ? GO:0002181 ... P0CX25 26619264
    363448 5jcs:r (9.5) BS01 rna ? GO:0000055 ... P53313 26619264
    363449 5jcs:s (9.5) BS01 rna ? GO:0000027 ... Q12019 26619264
    363450 5jcs:u (9.5) BS01 rna 3.-.-.- GO:0000055 ... Q03862 26619264
    363451 5jct:A (1.73) BS01 FE 1.13.11.24 GO:0003712 ... O00625 28004573
    363452 5jct:A (1.73) BS02 6JQ 1.13.11.24 GO:0003712 ... O00625 28004573
    363453 5jcu:A (1.93) BS01 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363454 5jcu:A (1.93) BS02 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363455 5jcu:B (1.93) BS01 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363456 5jcu:B (1.93) BS02 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363457 5jcu:C (1.93) BS01 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363458 5jcu:C (1.93) BS02 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363459 5jcu:D (1.93) BS01 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363460 5jcu:D (1.93) BS02 GVX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 27684484
    363461 5jcw:A (1.945) BS01 GVX 2.5.1.18 GO:0000302 ... P09211 27684484
    363462 5jcw:A (1.945) BS02 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    363463 5jcw:A (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    363464 5jcw:A (1.945) BS04 GSH 2.5.1.18 GO:0000302 ... P09211 27684484
    363465 5jcw:B (1.945) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 27684484
    363466 5jcw:B (1.945) BS02 GVX 2.5.1.18 GO:0000302 ... P09211 27684484
    363467 5jcw:B (1.945) BS03 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    363468 5jcw:B (1.945) BS04 CA 2.5.1.18 GO:0000302 ... P09211 27684484
    363469 5jcx:A (1.43) BS01 NAP ? GO:0000166 ... O76290 27411733
    363470 5jcx:A (1.43) BS02 CC6 ? GO:0000166 ... O76290 27411733 MOAD: ic50~60uM
    363471 5jcx:B (1.43) BS01 NAP ? GO:0000166 ... O76290 27411733
    363472 5jcx:B (1.43) BS02 CC6 ? GO:0000166 ... O76290 27411733 MOAD: ic50~60uM
    363473 5jcx:D (1.43) BS01 NAP ? GO:0000166 ... O76290 27411733
    363474 5jcx:D (1.43) BS02 CC6 ? GO:0000166 ... O76290 27411733 MOAD: ic50~60uM
    363475 5jcy:A (1.8) BS01 peptide ? N/A Q9Y4I1 27623148
    363476 5jcz:A (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    363477 5jcz:A (2.056) BS02 GDP 3.6.5.2 GO:0003924 ... P62491 27623148
    363478 5jcz:A (2.056) BS03 BEF 3.6.5.2 GO:0003924 ... P62491 27623148
    363479 5jcz:C (2.056) BS01 MG ? N/A Q9Y4I1 27623148
    363480 5jcz:D (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    363481 5jcz:D (2.056) BS02 GDP 3.6.5.2 GO:0003924 ... P62491 27623148
    363482 5jcz:D (2.056) BS03 BEF 3.6.5.2 GO:0003924 ... P62491 27623148
    363483 5jcz:I (2.056) BS01 MG 3.6.5.2 GO:0003924 ... P62491 27623148
    363484 5jcz:I (2.056) BS02 GDP 3.6.5.2 GO:0003924 ... P62491 27623148
    363485 5jcz:I (2.056) BS03 BEF 3.6.5.2 GO:0003924 ... P62491 27623148
    363486 5jd2:A (1.9) BS01 BYY ? GO:0009374 ... P22629 27811937
    363487 5jd2:B (1.9) BS01 BYY ? GO:0009374 ... P22629 27811937
    363488 5jd2:C (1.9) BS01 BYY ? GO:0009374 ... P22629 27811937
    363489 5jd2:D (1.9) BS01 BYY ? GO:0009374 ... P22629 27811937
    363490 5jd7:A (1.749) BS01 6JR 2.7.11.12 GO:0004692 ... Q13976 28793191
    363491 5jd9:A (1.63) BS01 MG ? GO:0000166 ... Q739M5 27185916
    363492 5jda:A (1.401) BS01 AMP 2.7.11.1 GO:0000166 ... Q739M5 27185916
    363493 5jda:A (1.401) BS02 MG 2.7.11.1 GO:0000166 ... Q739M5 27185916
    363494 5jdc:A (1.78) BS01 NAP ? GO:0000166 ... O76290 27411733
    363495 5jdc:A (1.78) BS02 6JP ? GO:0000166 ... O76290 27411733 MOAD: ic50=104.2uM
    363496 5jdc:B (1.78) BS01 NAP ? GO:0000166 ... O76290 27411733
    363497 5jdc:B (1.78) BS02 6JP ? GO:0000166 ... O76290 27411733 MOAD: ic50=104.2uM
    363498 5jdc:C (1.78) BS01 NAP ? GO:0000166 ... O76290 27411733
    363499 5jdc:C (1.78) BS02 6JP ? GO:0000166 ... O76290 27411733 MOAD: ic50=104.2uM
    363500 5jdc:D (1.78) BS01 NAP ? GO:0000166 ... O76290 27411733
    363501 5jdc:D (1.78) BS02 6JP ? GO:0000166 ... O76290 27411733 MOAD: ic50=104.2uM
    363502 5jdf:A (2.65) BS01 CA ? GO:0005262 ... Q57556 27183196
    363503 5jdf:A (2.65) BS02 CA ? GO:0005262 ... Q57556 27183196
    363504 5jdg:A (2.407) BS01 NA ? GO:0005262 ... Q57556 27183196
    363505 5jdg:A (2.407) BS02 NA ? GO:0005262 ... Q57556 27183196
    363506 5jdg:A (2.407) BS03 CA ? GO:0005262 ... Q57556 27183196
    363507 5jdh:A (2.203) BS01 NA ? GO:0005262 ... Q57556 27183196
    363508 5jdh:A (2.203) BS02 CA ? GO:0005262 ... Q57556 27183196
    363509 5jdh:A (2.203) BS03 CA ? GO:0005262 ... Q57556 27183196
    363510 5jdi:A (1.38) BS01 NAP ? GO:0000166 ... O76290 27411733
    363511 5jdi:A (1.38) BS02 6JO ? GO:0000166 ... O76290 27411733
    363512 5jdi:B (1.38) BS01 NAP ? GO:0000166 ... O76290 27411733
    363513 5jdi:B (1.38) BS02 6JO ? GO:0000166 ... O76290 27411733
    363514 5jdi:C (1.38) BS01 NAP ? GO:0000166 ... O76290 27411733
    363515 5jdi:D (1.38) BS01 NAP ? GO:0000166 ... O76290 27411733
    363516 5jdi:D (1.38) BS02 6JO ? GO:0000166 ... O76290 27411733
    363517 5jdj:B (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    363518 5jdj:E (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    363519 5jdj:I (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    363520 5jdj:L (1.738) BS01 CA 2.7.11.1 N/A Q8WZ42 27683155
    363521 5jdm:A (2.558) BS01 NA ? GO:0005262 ... Q57556 27183196
    363522 5jdm:A (2.558) BS02 NA ? GO:0005262 ... Q57556 27183196
    363523 5jdn:A (2.3) BS01 NA ? GO:0005262 ... Q57556 27183196
    363524 5jdo:A (3.2) BS01 HEM ? N/A G0UVW6 27083048
    363525 5jdo:A (3.2) BS02 HEM ? N/A G0UVW6 27083048
    363526 5jdo:B (3.2) BS01 HEM ? N/A G0UVW6 27083048
    363527 5jdo:B (3.2) BS02 HEM ? N/A G0UVW6 27083048
    363528 5jdo:C (3.2) BS01 HEM ? GO:0004601 ... P69905 27083048
    363529 5jdo:C (3.2) BS02 OXY ? GO:0004601 ... P69905 27083048
    363530 5jdo:D (3.2) BS01 HEM ? GO:0004601 ... P68871 27083048
    363531 5jdo:D (3.2) BS02 OXY ? GO:0004601 ... P68871 27083048
    363532 5jdo:E (3.2) BS01 HEM ? GO:0004601 ... P69905 27083048
    363533 5jdo:E (3.2) BS02 OXY ? GO:0004601 ... P69905 27083048
    363534 5jdo:F (3.2) BS01 HEM ? GO:0004601 ... P68871 27083048
    363535 5jdq:A (2.5) BS01 NA ? GO:0005262 ... Q57556 27183196
    363536 5jdq:A (2.5) BS02 NA ? GO:0005262 ... Q57556 27183196
    363537 5jdq:A (2.5) BS03 NA ? GO:0005262 ... Q57556 27183196
    363538 5jdt:A (1.0) BS01 MTN 3.2.1.17 GO:0003796 ... P00720 27673570
    363539 5jdt:A (1.0) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 27673570
    363540 5jdu:D (1.7) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 27347732
    363541 5jdv:B (1.34) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841
    363542 5jdv:B (1.34) BS02 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363543 5jdw:A (2.6) BS01 GLY 2.1.4.1 GO:0005515 ... P50440 9915841
    363544 5jdx:A (-1.00) BS01 PNS ? GO:0017000 ... Q5W265 N/A
    363545 5jdy:A (1.77) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363546 5jdy:A (1.77) BS02 TOF ? GO:0008168 ... Q9LBJ0 27070241
    363547 5jdy:B (1.77) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363548 5jdy:B (1.77) BS02 TOF ? GO:0008168 ... Q9LBJ0 27070241
    363549 5jdz:A (1.6) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363550 5jdz:B (1.6) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363551 5je0:A (1.552) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363552 5je0:A (1.552) BS02 AZ8 ? GO:0008168 ... Q9LBJ0 27070241
    363553 5je0:B (1.552) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363554 5je0:B (1.552) BS02 AZ8 ? GO:0008168 ... Q9LBJ0 27070241
    363555 5je1:A (1.95) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363556 5je1:A (1.95) BS02 TOF ? GO:0008168 ... Q9LBJ0 27070241
    363557 5je1:B (1.95) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363558 5je1:B (1.95) BS02 TOF ? GO:0008168 ... Q9LBJ0 27070241
    363559 5je2:A (1.519) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363560 5je2:B (1.519) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363561 5je3:A (1.792) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363562 5je3:B (1.792) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363563 5je4:A (1.932) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363564 5je4:B (1.932) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363565 5je5:A (1.564) BS01 SAH ? GO:0008168 ... Q9LBJ0 27070241
    363566 5je5:A (1.564) BS02 AZ9 ? GO:0008168 ... Q9LBJ0 27070241
    363567 5je7:B (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841
    363568 5je7:B (1.15) BS02 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363569 5je7:B (1.15) BS03 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363570 5je8:A (2.1) BS01 NAD 1.1.1.31 GO:0000166 ... Q81DR6 27120461
    363571 5je8:B (2.1) BS01 NAD 1.1.1.31 GO:0000166 ... Q81DR6 27120461
    363572 5je8:C (2.1) BS01 NAD 1.1.1.31 GO:0000166 ... Q81DR6 27120461
    363573 5je8:D (2.1) BS01 NAD 1.1.1.31 GO:0000166 ... Q81DR6 27120461
    363574 5jea:B (2.65) BS01 rna ? GO:0000176 ... P46948 27345150
    363575 5jea:G (2.65) BS01 rna ? GO:0000176 ... Q08285 27345150
    363576 5jea:H (2.65) BS01 rna ? GO:0000178 ... P38792 27345150
    363577 5jea:J (2.65) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 27345150
    363578 5jea:J (2.65) BS02 ZN 3.1.13.-
    3.1.26.-
    GO:0000049 ... Q08162 27345150
    363579 5jeb:A (3.298) BS01 6JS 2.7.10.1 GO:0004672 ... P00533 27595329
    363580 5jee:A (1.49) BS01 CA ? GO:0003677 ... O74036 27725183
    363581 5jef:A (2.42) BS01 NO3 2.7.13.3 GO:0007165 ... P27896 28522691
    363582 5jef:B (2.42) BS01 NO3 2.7.13.3 GO:0007165 ... P27896 28522691
    363583 5jeg:B (1.19) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841
    363584 5jeg:B (1.19) BS02 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363585 5jeg:B (1.19) BS03 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363586 5jeh:B (1.13) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841
    363587 5jeh:B (1.13) BS02 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363588 5jei:A (1.229) BS01 FWD ? GO:0015276 ... P19491 28211453 BindingDB: Ki=4nM, EC50=460nM
    363589 5jej:A (2.0) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363590 5jej:B (2.0) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363591 5jej:B (2.0) BS02 peptide ? GO:0003700 ... Q14653 27302953
    363592 5jek:A (2.4) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363593 5jek:B (2.4) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363594 5jel:A (1.6) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363595 5jeo:A (1.719) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363596 5jep:B (1.19) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841
    363597 5jep:B (1.19) BS02 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363598 5jep:B (1.19) BS03 EVF 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28252841 BindingDB: Ki=30nM
    363599 5jer:A (2.913) BS01 peptide ? GO:0003700 ... Q14653 27302953
    363600 5jer:C (2.913) BS01 peptide ? GO:0003700 ... Q14653 27302953

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).