SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    364801 5jsc:B (1.5) BS02 FAD 1.3.8.- GO:0000166 ... Q13JS1 N/A
    364802 5jsc:C (1.5) BS01 FAD 1.3.8.- GO:0000166 ... Q13JS1 N/A
    364803 5jsc:C (1.5) BS02 FAD 1.3.8.- GO:0000166 ... Q13JS1 N/A
    364804 5jsc:D (1.5) BS01 FAD 1.3.8.- GO:0000166 ... Q13JS1 N/A
    364805 5jsc:D (1.5) BS02 FAD 1.3.8.- GO:0000166 ... Q13JS1 N/A
    364806 5jsd:A (1.48) BS01 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364807 5jsd:A (1.48) BS02 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364808 5jsd:A (1.48) BS03 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364809 5jsd:A (1.48) BS04 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364810 5jsd:A (1.48) BS05 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364811 5jsd:A (1.48) BS06 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364812 5jsd:A (1.48) BS07 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364813 5jsd:B (1.48) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364814 5jsd:B (1.48) BS02 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364815 5jsd:B (1.48) BS03 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364816 5jsd:B (1.48) BS04 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364817 5jsd:B (1.48) BS05 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364818 5jsd:B (1.48) BS06 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364819 5jsd:C (1.48) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364820 5jsd:C (1.48) BS02 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364821 5jsd:C (1.48) BS03 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364822 5jsd:C (1.48) BS04 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364823 5jsd:C (1.48) BS05 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364824 5jsd:C (1.48) BS06 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364825 5jse:A (1.89) BS01 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364826 5jse:A (1.89) BS02 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364827 5jse:A (1.89) BS03 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364828 5jse:A (1.89) BS04 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364829 5jse:B (1.89) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364830 5jse:B (1.89) BS02 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364831 5jse:B (1.89) BS03 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364832 5jse:B (1.89) BS04 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364833 5jse:C (1.89) BS01 GAL ? GO:0046718 ... A0A159BDB5 28209973
    364834 5jse:C (1.89) BS02 1GN ? GO:0046718 ... A0A159BDB5 28209973
    364835 5jse:C (1.89) BS03 BGC ? GO:0046718 ... A0A159BDB5 28209973
    364836 5jse:C (1.89) BS04 6PZ ? GO:0046718 ... A0A159BDB5 28209973
    364837 5jsf:A (1.842) BS01 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 27362750
    364838 5jsg:A (2.5) BS01 6P9 ? GO:0007276 ... Q9Y657 28504676 MOAD: Kd=14.2uM
    364839 5jsg:B (2.5) BS01 6P9 ? GO:0007276 ... Q9Y657 28504676 MOAD: Kd=14.2uM
    364840 5jsh:A (1.3) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364841 5jsh:A (1.3) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364842 5jsh:A (1.3) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364843 5jsh:A (1.3) BS04 6ML 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364844 5jsh:B (1.3) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364845 5jsh:B (1.3) BS02 6ML 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364846 5jsh:B (1.3) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364847 5jsh:B (1.3) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364848 5jsj:A (2.348) BS01 6PD ? GO:0007276 ... Q9Y657 28504676 MOAD: Kd=4uM
    BindingDB: Kd=4000nM
    364849 5jsj:B (2.348) BS01 6PD ? GO:0007276 ... Q9Y657 28504676 MOAD: Kd=4uM
    BindingDB: Kd=4000nM
    364850 5jsk:A (0.95) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364851 5jsk:A (0.95) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364852 5jsk:A (0.95) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364853 5jsk:B (0.95) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364854 5jsk:B (0.95) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364855 5jsk:B (0.95) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364856 5jsl:A (1.25) BS01 HEC ? GO:0005506 ... P00138 28451315
    364857 5jsl:A (1.25) BS02 ASC ? GO:0005506 ... P00138 28451315
    364858 5jsm:A (2.19) BS01 6NB 2.7.11.1 GO:0004672 ... P15056 27571413
    364859 5jsm:B (2.19) BS01 6NB 2.7.11.1 GO:0004672 ... P15056 27571413 MOAD: ic50=260nM
    364860 5jsm:C (2.19) BS01 6NB 2.7.11.1 GO:0004672 ... P15056 27571413 MOAD: ic50=260nM
    364861 5jsm:D (2.19) BS01 6NB 2.7.11.1 GO:0004672 ... P15056 27571413
    364862 5jso:A (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364863 5jso:B (2.0) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364864 5jsp:A (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364865 5jsp:A (2.2) BS02 DQY 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364866 5jsp:B (2.2) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364867 5jsp:B (2.2) BS02 DQY 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364868 5jsq:A (1.503) BS01 6MS 2.4.2.8 GO:0000166 ... Q07010 27786284 MOAD: Ki=21.3uM
    364869 5jsq:B (1.503) BS01 6MS 2.4.2.8 GO:0000166 ... Q07010 27786284 MOAD: Ki=21.3uM
    364870 5jsr:A (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364871 5jsr:B (2.5) BS01 FE 4.4.1.3 GO:0016829 ... D0CY60 27755868
    364872 5jss:E (1.19) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    364873 5jss:E (1.19) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364874 5jss:E (1.19) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364875 5jss:E (1.19) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364876 5jss:E (1.19) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364877 5jss:E (1.19) BS06 6NG 3.4.24.27 GO:0004222 ... P00800 27933956 MOAD: Kd=0.354uM
    364878 5jst:A (2.199) BS01 GLC ? GO:0005515 ... A6ZQL5
    P0AEX9
    28266564
    364879 5jst:A (2.199) BS02 GLC ? GO:0005515 ... A6ZQL5
    P0AEX9
    28266564
    364880 5jst:B (2.199) BS01 GLC ? GO:0005515 ... A6ZQL5
    P0AEX9
    28266564
    364881 5jst:B (2.199) BS02 GLC ? GO:0005515 ... A6ZQL5
    P0AEX9
    28266564
    364882 5jsu:A (1.4) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364883 5jsu:A (1.4) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364884 5jsu:A (1.4) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364885 5jsu:A (1.4) BS04 6ML 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364886 5jsu:B (1.4) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364887 5jsu:B (1.4) BS02 6ML 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364888 5jsu:B (1.4) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364889 5jsu:B (1.4) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364890 5jsv:A (1.17) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    364891 5jsv:A (1.17) BS02 6MQ 2.4.2.29 GO:0002099 ... P28720 N/A
    364892 5jsw:A (1.22) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    364893 5jsw:A (1.22) BS02 6MM 2.4.2.29 GO:0002099 ... P28720 N/A
    364894 5jsx:A (2.81) BS01 MN 2.4.1.266 GO:0016757 ... A5U1Q6 28625787
    364895 5jsx:A (2.81) BS02 UPG 2.4.1.266 GO:0016757 ... A5U1Q6 28625787
    364896 5jsy:A (1.04) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364897 5jsy:A (1.04) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364898 5jsy:A (1.04) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364899 5jsy:B (1.04) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364900 5jsy:B (1.04) BS02 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364901 5jsy:B (1.04) BS03 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364902 5jt0:A (2.8) BS01 MN 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    364903 5jt0:A (2.8) BS02 UDP 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    364904 5jt0:A (2.8) BS03 XDX 2.4.1.266 GO:0000287 ... P9WMW9 28625787
    364905 5jt1:A (1.35) BS01 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364906 5jt1:A (1.35) BS02 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364907 5jt1:A (1.35) BS03 SF4 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364908 5jt1:A (1.35) BS04 6ML 1.12.2.1 GO:0005515 ... Q72AS4 28319099
    364909 5jt1:B (1.35) BS01 SF4 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364910 5jt1:B (1.35) BS02 6ML 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364911 5jt1:B (1.35) BS03 FCO 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364912 5jt1:B (1.35) BS04 FE2 1.12.7.2 GO:0005515 ... Q72AS3 28319099
    364913 5jt2:A (2.702) BS01 6NC 2.7.11.1 GO:0004672 ... P15056 27571413
    364914 5jt2:B (2.702) BS01 6NC 2.7.11.1 GO:0004672 ... P15056 27571413
    364915 5jt2:C (2.702) BS01 6NC 2.7.11.1 GO:0004672 ... P15056 27571413
    364916 5jt2:D (2.702) BS01 6NC 2.7.11.1 GO:0004672 ... P15056 27571413
    364917 5jt4:A (1.25) BS01 HEC ? GO:0005506 ... P00138 28451315
    364918 5jt4:A (1.25) BS02 ASC ? GO:0005506 ... P00138 28451315
    364919 5jt5:A (1.21) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    364920 5jt5:A (1.21) BS02 6NK 2.4.2.29 GO:0002099 ... P28720 N/A
    364921 5jt6:A (1.54) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    364922 5jt6:A (1.54) BS02 6N1 2.4.2.29 GO:0002099 ... P28720 N/A
    364923 5jt7:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    364924 5jt7:A (1.7) BS02 6N2 2.4.2.29 GO:0002099 ... P28720 N/A
    364925 5jt9:E (1.26) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    364926 5jt9:E (1.26) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364927 5jt9:E (1.26) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364928 5jt9:E (1.26) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364929 5jt9:E (1.26) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    364930 5jt9:E (1.26) BS06 7AF 3.4.24.27 GO:0004222 ... P00800 27933956 MOAD: Kd=0.233uM
    364931 5jtb:A (2.8) BS01 ZMA ? GO:0001609 ... P0ABE7
    P29274
    28508075
    364932 5jtb:A (2.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274
    28508075
    364933 5jtb:A (2.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274
    28508075
    364934 5jtb:A (2.8) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274
    28508075
    364935 5jtb:A (2.8) BS05 IOD ? GO:0001609 ... P0ABE7
    P29274
    28508075
    364936 5jtc:A (2.24) BS01 peptide 1.14.11.16 GO:0018193 ... Q12797 32457455
    364937 5jtc:A (2.24) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 32457455
    364938 5jtc:A (2.24) BS03 PD2 1.14.11.16 GO:0018193 ... Q12797 32457455
    364939 5jtd:A (1.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    364940 5jtd:A (1.5) BS02 RU8 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    364941 5jtd:B (1.5) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    364942 5jtd:B (1.5) BS02 RU8 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 27639964
    364943 5jte:AB (3.6) BS01 rna ? GO:0000028 ... P0A7V0 27380950
    364944 5jte:AC (3.6) BS01 rna ? GO:0000028 ... P0A7V3 27380950
    364945 5jte:AD (3.6) BS01 rna ? GO:0000028 ... P0A7V8 27380950
    364946 5jte:AE (3.6) BS01 rna ? GO:0000028 ... P0A7W1 27380950
    364947 5jte:AF (3.6) BS01 rna ? GO:0002181 ... P02358 27380950
    364948 5jte:AG (3.6) BS01 rna ? GO:0000028 ... P02359 27380950
    364949 5jte:AG (3.6) BS02 rna ? GO:0000028 ... P02359 27380950
    364950 5jte:AH (3.6) BS01 rna ? GO:0000028 ... P0A7W7 27380950
    364951 5jte:AI (3.6) BS01 rna ? GO:0000049 ... P0A7X3 27380950
    364952 5jte:AJ (3.6) BS01 rna ? GO:0000049 ... P0A7R5 27380950
    364953 5jte:AK (3.6) BS01 rna ? GO:0002181 ... P0A7R9 27380950
    364954 5jte:AL (3.6) BS01 rna ? GO:0000049 ... P0A7S3 27380950
    364955 5jte:AM (3.6) BS01 rna ? GO:0000049 ... P0A7S9 27380950
    364956 5jte:AN (3.6) BS01 rna ? GO:0000028 ... P0AG59 27380950
    364957 5jte:AO (3.6) BS01 rna ? GO:0000028 ... P0ADZ4 27380950
    364958 5jte:AO (3.6) BS02 rna ? GO:0000028 ... P0ADZ4 27380950
    364959 5jte:AP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 27380950
    364960 5jte:AQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 27380950
    364961 5jte:AR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 27380950
    364962 5jte:AS (3.6) BS01 rna ? GO:0000028 ... P0A7U3 27380950
    364963 5jte:AT (3.6) BS01 rna ? GO:0000028 ... P0A7U7 27380950
    364964 5jte:AU (3.6) BS01 rna ? GO:0000028 ... P68679 27380950
    364965 5jte:B0 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 27380950
    364966 5jte:B1 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 27380950
    364967 5jte:B2 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 27380950
    364968 5jte:B3 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 27380950
    364969 5jte:B4 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 27380950
    364970 5jte:BC (3.6) BS01 rna ? GO:0000027 ... P60422 27380950
    364971 5jte:BC (3.6) BS02 rna ? GO:0000027 ... P60422 27380950
    364972 5jte:BD (3.6) BS01 rna ? GO:0000027 ... P60438 27380950
    364973 5jte:BE (3.6) BS01 rna ? GO:0001070 ... P60723 27380950
    364974 5jte:BF (3.6) BS01 rna ? GO:0000027 ... P62399 27380950
    364975 5jte:BF (3.6) BS02 rna ? GO:0000027 ... P62399 27380950
    364976 5jte:BF (3.6) BS03 rna ? GO:0000027 ... P62399 27380950
    364977 5jte:BG (3.6) BS01 rna ? GO:0000027 ... P0AG55 27380950
    364978 5jte:BH (3.6) BS01 rna ? GO:0002181 ... P0A7R1 27380950
    364979 5jte:BI (3.6) BS01 rna ? GO:0000027 ... P0A7J7 27380950
    364980 5jte:BJ (3.6) BS01 rna ? GO:0002181 ... P0AA10 27380950
    364981 5jte:BK (3.6) BS01 rna ? GO:0002181 ... P0ADY3 27380950
    364982 5jte:BK (3.6) BS02 rna ? GO:0002181 ... P0ADY3 27380950
    364983 5jte:BL (3.6) BS01 rna ? GO:0002181 ... P02413 27380950
    364984 5jte:BM (3.6) BS01 rna ? GO:0000027 ... P0ADY7 27380950
    364985 5jte:BM (3.6) BS02 rna ? GO:0000027 ... P0ADY7 27380950
    364986 5jte:BN (3.6) BS01 rna ? GO:0000027 ... P0AG44 27380950
    364987 5jte:BO (3.6) BS01 rna ? GO:0002181 ... P0C018 27380950
    364988 5jte:BO (3.6) BS02 rna ? GO:0002181 ... P0C018 27380950
    364989 5jte:BP (3.6) BS01 rna ? GO:0000027 ... P0A7K6 27380950
    364990 5jte:BP (3.6) BS02 rna ? GO:0000027 ... P0A7K6 27380950
    364991 5jte:BQ (3.6) BS01 rna ? GO:0000027 ... P0A7L3 27380950
    364992 5jte:BR (3.6) BS01 rna ? GO:0002181 ... P0AG48 27380950
    364993 5jte:BS (3.6) BS01 rna ? GO:0002181 ... P61175 27380950
    364994 5jte:BT (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 27380950
    364995 5jte:BU (3.6) BS01 rna ? GO:0000027 ... P60624 27380950
    364996 5jte:BV (3.6) BS01 rna ? GO:0000027 ... P68919 27380950
    364997 5jte:BW (3.6) BS01 rna ? GO:0000027 ... P0A7L8 27380950
    364998 5jte:BW (3.6) BS02 rna ? GO:0000027 ... P0A7L8 27380950
    364999 5jte:BX (3.6) BS01 rna ? GO:0000027 ... P0A7M2 27380950
    365000 5jte:BY (3.6) BS01 rna ? GO:0000027 ... P0A7M6 27380950

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).