SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    365201 5juo:KB (4.0) BS02 rna ? GO:0000462 ... P05756 27159452
    365202 5juo:L (4.0) BS01 rna ? GO:0000470 ... P17076 27159452
    365203 5juo:L (4.0) BS02 rna ? GO:0000470 ... P17076 27159452
    365204 5juo:LA (4.0) BS01 rna ? GO:0002181 ... P87262 27159452
    365205 5juo:LB (4.0) BS01 rna ? GO:0000028 ... P06367 27159452
    365206 5juo:M (4.0) BS01 rna ? GO:0002181 ... P05738 27159452
    365207 5juo:MA (4.0) BS01 rna ? GO:0000463 ... P0CX84 27159452
    365208 5juo:MA (4.0) BS02 rna ? GO:0000463 ... P0CX84 27159452
    365209 5juo:MB (4.0) BS01 rna ? GO:0000028 ... Q01855 27159452
    365210 5juo:N (4.0) BS01 rna ? GO:0000027 ... P41805 27159452
    365211 5juo:N (4.0) BS02 rna ? GO:0000027 ... P41805 27159452
    365212 5juo:NA (4.0) BS01 rna ? GO:0002181 ... P05745 27159452
    365213 5juo:NB (4.0) BS01 rna ? GO:0000462 ... P0CX51 27159452
    365214 5juo:O (4.0) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    365215 5juo:O (4.0) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    365216 5juo:OA (4.0) BS01 rna ? GO:0000448 ... P49166 27159452
    365217 5juo:OA (4.0) BS02 rna ? GO:0000448 ... P49166 27159452
    365218 5juo:OB (4.0) BS01 rna ? GO:0000028 ... P02407 27159452
    365219 5juo:P (4.0) BS01 rna ? GO:0000027 ... P0CX53 27159452
    365220 5juo:PA (4.0) BS01 rna ? GO:0002181 ... P49167 27159452
    365221 5juo:PB (4.0) BS01 rna ? GO:0000054 ... P0CX55 27159452
    365222 5juo:Q (4.0) BS01 rna ? GO:0002181 ... Q12690 27159452
    365223 5juo:Q (4.0) BS02 rna ? GO:0002181 ... Q12690 27159452
    365224 5juo:QA (4.0) BS01 rna ? GO:0002181 ... P04650 27159452
    365225 5juo:QA (4.0) BS02 rna ? GO:0002181 ... P04650 27159452
    365226 5juo:QB (4.0) BS01 rna ? GO:0000028 ... P07280 27159452
    365227 5juo:R (4.0) BS01 rna ? GO:0000027 ... P36105 27159452
    365228 5juo:RA (4.0) BS01 rna ? GO:0000027 ... P0CH08 27159452
    365229 5juo:RB (4.0) BS01 rna ? GO:0000462 ... P38701 27159452
    365230 5juo:S (4.0) BS01 rna ? GO:0002181 ... P05748 27159452
    365231 5juo:S (4.0) BS02 rna ? GO:0002181 ... P05748 27159452
    365232 5juo:T (4.0) BS01 rna ? GO:0000470 ... P26784 27159452
    365233 5juo:TA (4.0) BS01 rna ? GO:0002181 ... P0CX27 27159452
    365234 5juo:TA (4.0) BS02 rna ? GO:0002181 ... P0CX27 27159452
    365235 5juo:TB (4.0) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    365236 5juo:U (4.0) BS01 rna ? GO:0000448 ... P05740 27159452
    365237 5juo:U (4.0) BS02 rna ? GO:0000448 ... P05740 27159452
    365238 5juo:UA (4.0) BS01 rna ? GO:0002181 ... P0CX25 27159452
    365239 5juo:UA (4.0) BS02 rna ? GO:0002181 ... P0CX25 27159452
    365240 5juo:UB (4.0) BS01 rna ? GO:0000462 ... P0CX29 27159452
    365241 5juo:V (4.0) BS01 rna ? GO:0002181 ... P0CX49 27159452
    365242 5juo:VA (4.0) BS01 rna ? GO:0000027 ... P05317 27159452
    365243 5juo:VB (4.0) BS01 rna ? GO:0000462 ... P0CX31 27159452
    365244 5juo:W (4.0) BS01 rna ? GO:0002181 ... P0CX82 27159452
    365245 5juo:W (4.0) BS02 rna ? GO:0002181 ... P0CX82 27159452
    365246 5juo:WA (4.0) BS01 rna ? GO:0001965 ... P38011 27159452
    365247 5juo:WB (4.0) BS01 rna ? GO:0002181 ... Q3E792 27159452
    365248 5juo:WB (4.0) BS02 rna ? GO:0002181 ... Q3E792 27159452
    365249 5juo:X (4.0) BS01 rna ? GO:0002181 ... P0CX23 27159452
    365250 5juo:X (4.0) BS02 rna ? GO:0002181 ... P0CX23 27159452
    365251 5juo:XA (4.0) BS01 rna ? GO:0000028 ... P32905 27159452
    365252 5juo:XB (4.0) BS01 rna ? GO:0000054 ... P39938 27159452
    365253 5juo:Y (4.0) BS01 rna ? GO:0002181 ... Q02753 27159452
    365254 5juo:Y (4.0) BS02 rna ? GO:0002181 ... Q02753 27159452
    365255 5juo:YA (4.0) BS01 rna ? GO:0000462 ... P33442 27159452
    365256 5juo:YB (4.0) BS01 rna ? GO:0000028 ... P35997 27159452
    365257 5juo:Z (4.0) BS01 rna ? GO:0002181 ... P05749 27159452
    365258 5juo:ZA (4.0) BS01 rna ? GO:0000054 ... P25443 27159452
    365259 5juo:ZA (4.0) BS02 rna ? GO:0000054 ... P25443 27159452
    365260 5juo:ZB (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    365261 5jup:AA (3.5) BS01 rna ? GO:0002181 ... P0CX41 27159452
    365262 5jup:AB (3.5) BS01 rna ? GO:0000054 ... P05750 27159452
    365263 5jup:AC (3.5) BS01 rna ? GO:0002181 ... P41057 27159452
    365264 5jup:BA (3.5) BS01 rna ? GO:0002181 ... P04449 27159452
    365265 5jup:BB (3.5) BS01 rna ? GO:0002181 ... P0CX35 27159452
    365266 5jup:BC (3.5) BS01 rna ? GO:0002181 ... P0CX33 27159452
    365267 5jup:CA (3.5) BS01 rna ? GO:0000027 ... P04456 27159452
    365268 5jup:CA (3.5) BS02 rna ? GO:0000027 ... P04456 27159452
    365269 5jup:CB (3.5) BS01 rna ? GO:0000028 ... P26783 27159452
    365270 5jup:CB (3.5) BS02 rna ? GO:0000028 ... P26783 27159452
    365271 5jup:CC (3.5) BS01 rna ? GO:0000028 ... P05759 27159452
    365272 5jup:DA (3.5) BS01 rna ? GO:0002181 ... P05743 27159452
    365273 5jup:DA (3.5) BS02 rna ? GO:0002181 ... P05743 27159452
    365274 5jup:DB (3.5) BS01 rna ? GO:0000462 ... P0CX37 27159452
    365275 5jup:DC (3.5) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365276 5jup:DC (3.5) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365277 5jup:DC (3.5) BS03 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365278 5jup:DC (3.5) BS04 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    365279 5jup:DC (3.5) BS05 MG 3.6.5.- GO:0003746 ... P32324 27159452
    365280 5jup:DC (3.5) BS06 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    365281 5jup:E (3.5) BS01 rna ? GO:0000055 ... P0CX43 27159452
    365282 5jup:E (3.5) BS02 rna ? GO:0000055 ... P0CX43 27159452
    365283 5jup:EA (3.5) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    365284 5jup:EB (3.5) BS01 rna ? GO:0002181 ... P26786 27159452
    365285 5jup:F (3.5) BS01 rna ? GO:0002181 ... P0CX45 27159452
    365286 5jup:FA (3.5) BS01 rna ? GO:0002181 ... P02406 27159452
    365287 5jup:FB (3.5) BS01 rna ? GO:0000462 ... P0CX39 27159452
    365288 5jup:FB (3.5) BS02 rna ? GO:0000462 ... P0CX39 27159452
    365289 5jup:G (3.5) BS01 rna ? GO:0000027 ... P14126 27159452
    365290 5jup:GA (3.5) BS01 rna ? GO:0002181 ... P05747 27159452
    365291 5jup:GB (3.5) BS01 rna ? GO:0000462 ... O13516 27159452
    365292 5jup:H (3.5) BS01 rna ? GO:0002181 ... P10664 27159452
    365293 5jup:H (3.5) BS02 rna ? GO:0002181 ... P10664 27159452
    365294 5jup:HA (3.5) BS01 rna ? GO:0002181 ... P14120 27159452
    365295 5jup:HB (3.5) BS01 rna ? GO:0000054 ... Q08745 27159452
    365296 5jup:I (3.5) BS01 rna ? GO:0000027 ... P26321 27159452
    365297 5jup:I (3.5) BS02 rna ? GO:0000027 ... P26321 27159452
    365298 5jup:IA (3.5) BS01 rna ? GO:0002181 ... P0C2H8 27159452
    365299 5jup:IB (3.5) BS01 rna ? GO:0000028 ... P0CX47 27159452
    365300 5jup:J (3.5) BS01 rna ? GO:0000027 ... Q02326 27159452
    365301 5jup:JA (3.5) BS01 rna ? GO:0002181 ... P38061 27159452
    365302 5jup:JB (3.5) BS01 rna ? GO:0000028 ... P48589 27159452
    365303 5jup:K (3.5) BS01 rna ? GO:0000463 ... P05737 27159452
    365304 5jup:K (3.5) BS02 rna ? GO:0000463 ... P05737 27159452
    365305 5jup:KA (3.5) BS01 rna ? GO:0000027 ... P05744 27159452
    365306 5jup:KB (3.5) BS01 rna ? GO:0000462 ... P05756 27159452
    365307 5jup:KB (3.5) BS02 rna ? GO:0000462 ... P05756 27159452
    365308 5jup:L (3.5) BS01 rna ? GO:0000470 ... P17076 27159452
    365309 5jup:L (3.5) BS02 rna ? GO:0000470 ... P17076 27159452
    365310 5jup:LA (3.5) BS01 rna ? GO:0002181 ... P87262 27159452
    365311 5jup:LB (3.5) BS01 rna ? GO:0000028 ... P06367 27159452
    365312 5jup:M (3.5) BS01 rna ? GO:0002181 ... P05738 27159452
    365313 5jup:MA (3.5) BS01 rna ? GO:0000463 ... P0CX84 27159452
    365314 5jup:MA (3.5) BS02 rna ? GO:0000463 ... P0CX84 27159452
    365315 5jup:MB (3.5) BS01 rna ? GO:0000028 ... Q01855 27159452
    365316 5jup:N (3.5) BS01 rna ? GO:0000027 ... P41805 27159452
    365317 5jup:N (3.5) BS02 rna ? GO:0000027 ... P41805 27159452
    365318 5jup:NA (3.5) BS01 rna ? GO:0002181 ... P05745 27159452
    365319 5jup:NB (3.5) BS01 rna ? GO:0000462 ... P0CX51 27159452
    365320 5jup:O (3.5) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    365321 5jup:O (3.5) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    365322 5jup:OA (3.5) BS01 rna ? GO:0000448 ... P49166 27159452
    365323 5jup:OA (3.5) BS02 rna ? GO:0000448 ... P49166 27159452
    365324 5jup:OB (3.5) BS01 rna ? GO:0000028 ... P02407 27159452
    365325 5jup:P (3.5) BS01 rna ? GO:0000027 ... P0CX53 27159452
    365326 5jup:PA (3.5) BS01 rna ? GO:0002181 ... P49167 27159452
    365327 5jup:PB (3.5) BS01 rna ? GO:0000054 ... P0CX55 27159452
    365328 5jup:Q (3.5) BS01 rna ? GO:0002181 ... Q12690 27159452
    365329 5jup:Q (3.5) BS02 rna ? GO:0002181 ... Q12690 27159452
    365330 5jup:QA (3.5) BS01 rna ? GO:0002181 ... P04650 27159452
    365331 5jup:QA (3.5) BS02 rna ? GO:0002181 ... P04650 27159452
    365332 5jup:QB (3.5) BS01 rna ? GO:0000028 ... P07280 27159452
    365333 5jup:R (3.5) BS01 rna ? GO:0000027 ... P36105 27159452
    365334 5jup:RA (3.5) BS01 rna ? GO:0000027 ... P0CH08 27159452
    365335 5jup:RB (3.5) BS01 rna ? GO:0000462 ... P38701 27159452
    365336 5jup:S (3.5) BS01 rna ? GO:0002181 ... P05748 27159452
    365337 5jup:S (3.5) BS02 rna ? GO:0002181 ... P05748 27159452
    365338 5jup:T (3.5) BS01 rna ? GO:0000470 ... P26784 27159452
    365339 5jup:TA (3.5) BS01 rna ? GO:0002181 ... P0CX27 27159452
    365340 5jup:TB (3.5) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    365341 5jup:U (3.5) BS01 rna ? GO:0000448 ... P05740 27159452
    365342 5jup:U (3.5) BS02 rna ? GO:0000448 ... P05740 27159452
    365343 5jup:UA (3.5) BS01 rna ? GO:0002181 ... P0CX25 27159452
    365344 5jup:UB (3.5) BS01 rna ? GO:0000462 ... P0CX29 27159452
    365345 5jup:V (3.5) BS01 rna ? GO:0002181 ... P0CX49 27159452
    365346 5jup:VA (3.5) BS01 rna ? GO:0000027 ... P05317 27159452
    365347 5jup:VB (3.5) BS01 rna ? GO:0000462 ... P0CX31 27159452
    365348 5jup:W (3.5) BS01 rna ? GO:0002181 ... P0CX82 27159452
    365349 5jup:W (3.5) BS02 rna ? GO:0002181 ... P0CX82 27159452
    365350 5jup:WA (3.5) BS01 rna ? GO:0001965 ... P38011 27159452
    365351 5jup:WB (3.5) BS01 rna ? GO:0002181 ... Q3E792 27159452
    365352 5jup:WB (3.5) BS02 rna ? GO:0002181 ... Q3E792 27159452
    365353 5jup:X (3.5) BS01 rna ? GO:0002181 ... P0CX23 27159452
    365354 5jup:X (3.5) BS02 rna ? GO:0002181 ... P0CX23 27159452
    365355 5jup:XA (3.5) BS01 rna ? GO:0000028 ... P32905 27159452
    365356 5jup:XB (3.5) BS01 rna ? GO:0000054 ... P39938 27159452
    365357 5jup:Y (3.5) BS01 rna ? GO:0002181 ... Q02753 27159452
    365358 5jup:Y (3.5) BS02 rna ? GO:0002181 ... Q02753 27159452
    365359 5jup:YA (3.5) BS01 rna ? GO:0000462 ... P33442 27159452
    365360 5jup:YB (3.5) BS01 rna ? GO:0000028 ... P35997 27159452
    365361 5jup:Z (3.5) BS01 rna ? GO:0002181 ... P05749 27159452
    365362 5jup:ZA (3.5) BS01 rna ? GO:0000054 ... P25443 27159452
    365363 5jup:ZA (3.5) BS02 rna ? GO:0000054 ... P25443 27159452
    365364 5jup:ZB (3.5) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    365365 5jur:A (2.93) BS01 6NS ? N/A Q30NP1 28197322
    365366 5jus:AA (4.2) BS01 rna ? GO:0002181 ... P0CX41 27159452
    365367 5jus:AA (4.2) BS02 rna ? GO:0002181 ... P0CX41 27159452
    365368 5jus:AB (4.2) BS01 rna ? GO:0000054 ... P05750 27159452
    365369 5jus:AC (4.2) BS01 rna ? GO:0002181 ... P41057 27159452
    365370 5jus:BA (4.2) BS01 rna ? GO:0002181 ... P04449 27159452
    365371 5jus:BB (4.2) BS01 rna ? GO:0002181 ... P0CX35 27159452
    365372 5jus:BC (4.2) BS01 rna ? GO:0002181 ... P0CX33 27159452
    365373 5jus:CA (4.2) BS01 rna ? GO:0000027 ... P04456 27159452
    365374 5jus:CA (4.2) BS02 rna ? GO:0000027 ... P04456 27159452
    365375 5jus:CB (4.2) BS01 rna ? GO:0000028 ... P26783 27159452
    365376 5jus:CB (4.2) BS02 rna ? GO:0000028 ... P26783 27159452
    365377 5jus:CC (4.2) BS01 rna ? GO:0000028 ... P05759 27159452
    365378 5jus:DA (4.2) BS01 rna ? GO:0002181 ... P05743 27159452
    365379 5jus:DA (4.2) BS02 rna ? GO:0002181 ... P05743 27159452
    365380 5jus:DB (4.2) BS01 rna ? GO:0000462 ... P0CX37 27159452
    365381 5jus:DC (4.2) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365382 5jus:DC (4.2) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365383 5jus:DC (4.2) BS03 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    365384 5jus:DC (4.2) BS04 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    365385 5jus:E (4.2) BS01 rna ? GO:0000055 ... P0CX43 27159452
    365386 5jus:E (4.2) BS02 rna ? GO:0000055 ... P0CX43 27159452
    365387 5jus:EA (4.2) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    365388 5jus:EB (4.2) BS01 rna ? GO:0002181 ... P26786 27159452
    365389 5jus:F (4.2) BS01 rna ? GO:0002181 ... P0CX45 27159452
    365390 5jus:F (4.2) BS02 rna ? GO:0002181 ... P0CX45 27159452
    365391 5jus:FA (4.2) BS01 rna ? GO:0002181 ... P02406 27159452
    365392 5jus:FB (4.2) BS01 rna ? GO:0000462 ... P0CX39 27159452
    365393 5jus:FB (4.2) BS02 rna ? GO:0000462 ... P0CX39 27159452
    365394 5jus:G (4.2) BS01 rna ? GO:0000027 ... P14126 27159452
    365395 5jus:GA (4.2) BS01 rna ? GO:0002181 ... P05747 27159452
    365396 5jus:GB (4.2) BS01 rna ? GO:0000462 ... O13516 27159452
    365397 5jus:H (4.2) BS01 rna ? GO:0002181 ... P10664 27159452
    365398 5jus:H (4.2) BS02 rna ? GO:0002181 ... P10664 27159452
    365399 5jus:HA (4.2) BS01 rna ? GO:0002181 ... P14120 27159452
    365400 5jus:HB (4.2) BS01 rna ? GO:0000054 ... Q08745 27159452

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).