SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    365401 5jus:I (4.2) BS01 rna ? GO:0000027 ... P26321 27159452
    365402 5jus:I (4.2) BS02 rna ? GO:0000027 ... P26321 27159452
    365403 5jus:IA (4.2) BS01 rna ? GO:0002181 ... P0C2H8 27159452
    365404 5jus:IB (4.2) BS01 rna ? GO:0000028 ... P0CX47 27159452
    365405 5jus:J (4.2) BS01 rna ? GO:0000027 ... Q02326 27159452
    365406 5jus:JA (4.2) BS01 rna ? GO:0002181 ... P38061 27159452
    365407 5jus:JB (4.2) BS01 rna ? GO:0000028 ... P48589 27159452
    365408 5jus:K (4.2) BS01 rna ? GO:0000463 ... P05737 27159452
    365409 5jus:K (4.2) BS02 rna ? GO:0000463 ... P05737 27159452
    365410 5jus:KA (4.2) BS01 rna ? GO:0000027 ... P05744 27159452
    365411 5jus:KB (4.2) BS01 rna ? GO:0000462 ... P05756 27159452
    365412 5jus:L (4.2) BS01 rna ? GO:0000470 ... P17076 27159452
    365413 5jus:L (4.2) BS02 rna ? GO:0000470 ... P17076 27159452
    365414 5jus:LA (4.2) BS01 rna ? GO:0002181 ... P87262 27159452
    365415 5jus:LB (4.2) BS01 rna ? GO:0000028 ... P06367 27159452
    365416 5jus:M (4.2) BS01 rna ? GO:0002181 ... P05738 27159452
    365417 5jus:MA (4.2) BS01 rna ? GO:0000463 ... P0CX84 27159452
    365418 5jus:MA (4.2) BS02 rna ? GO:0000463 ... P0CX84 27159452
    365419 5jus:MB (4.2) BS01 rna ? GO:0000028 ... Q01855 27159452
    365420 5jus:N (4.2) BS01 rna ? GO:0000027 ... P41805 27159452
    365421 5jus:N (4.2) BS02 rna ? GO:0000027 ... P41805 27159452
    365422 5jus:NA (4.2) BS01 rna ? GO:0002181 ... P05745 27159452
    365423 5jus:NB (4.2) BS01 rna ? GO:0000462 ... P0CX51 27159452
    365424 5jus:O (4.2) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    365425 5jus:O (4.2) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    365426 5jus:O (4.2) BS03 rna ? GO:0000027 ... P0C0W9 27159452
    365427 5jus:OA (4.2) BS01 rna ? GO:0000448 ... P49166 27159452
    365428 5jus:OA (4.2) BS02 rna ? GO:0000448 ... P49166 27159452
    365429 5jus:OB (4.2) BS01 rna ? GO:0000028 ... P02407 27159452
    365430 5jus:P (4.2) BS01 rna ? GO:0000027 ... P0CX53 27159452
    365431 5jus:PA (4.2) BS01 rna ? GO:0002181 ... P49167 27159452
    365432 5jus:PB (4.2) BS01 rna ? GO:0000054 ... P0CX55 27159452
    365433 5jus:Q (4.2) BS01 rna ? GO:0002181 ... Q12690 27159452
    365434 5jus:Q (4.2) BS02 rna ? GO:0002181 ... Q12690 27159452
    365435 5jus:QA (4.2) BS01 rna ? GO:0002181 ... P04650 27159452
    365436 5jus:QA (4.2) BS02 rna ? GO:0002181 ... P04650 27159452
    365437 5jus:QB (4.2) BS01 rna ? GO:0000028 ... P07280 27159452
    365438 5jus:R (4.2) BS01 rna ? GO:0000027 ... P36105 27159452
    365439 5jus:RA (4.2) BS01 rna ? GO:0000027 ... P0CH08 27159452
    365440 5jus:RB (4.2) BS01 rna ? GO:0000462 ... P38701 27159452
    365441 5jus:S (4.2) BS01 rna ? GO:0002181 ... P05748 27159452
    365442 5jus:S (4.2) BS02 rna ? GO:0002181 ... P05748 27159452
    365443 5jus:T (4.2) BS01 rna ? GO:0000470 ... P26784 27159452
    365444 5jus:TA (4.2) BS01 rna ? GO:0002181 ... P0CX27 27159452
    365445 5jus:TB (4.2) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    365446 5jus:U (4.2) BS01 rna ? GO:0000448 ... P05740 27159452
    365447 5jus:U (4.2) BS02 rna ? GO:0000448 ... P05740 27159452
    365448 5jus:UA (4.2) BS01 rna ? GO:0002181 ... P0CX25 27159452
    365449 5jus:UA (4.2) BS02 rna ? GO:0002181 ... P0CX25 27159452
    365450 5jus:UB (4.2) BS01 rna ? GO:0000462 ... P0CX29 27159452
    365451 5jus:V (4.2) BS01 rna ? GO:0002181 ... P0CX49 27159452
    365452 5jus:VA (4.2) BS01 rna ? GO:0000027 ... P05317 27159452
    365453 5jus:VB (4.2) BS01 rna ? GO:0000462 ... P0CX31 27159452
    365454 5jus:W (4.2) BS01 rna ? GO:0002181 ... P0CX82 27159452
    365455 5jus:W (4.2) BS02 rna ? GO:0002181 ... P0CX82 27159452
    365456 5jus:WA (4.2) BS01 rna ? GO:0001965 ... P38011 27159452
    365457 5jus:WB (4.2) BS01 rna ? GO:0002181 ... Q3E792 27159452
    365458 5jus:WB (4.2) BS02 rna ? GO:0002181 ... Q3E792 27159452
    365459 5jus:X (4.2) BS01 rna ? GO:0002181 ... P0CX23 27159452
    365460 5jus:X (4.2) BS02 rna ? GO:0002181 ... P0CX23 27159452
    365461 5jus:XA (4.2) BS01 rna ? GO:0000028 ... P32905 27159452
    365462 5jus:XB (4.2) BS01 rna ? GO:0000054 ... P39938 27159452
    365463 5jus:Y (4.2) BS01 rna ? GO:0002181 ... Q02753 27159452
    365464 5jus:Y (4.2) BS02 rna ? GO:0002181 ... Q02753 27159452
    365465 5jus:YA (4.2) BS01 rna ? GO:0000462 ... P33442 27159452
    365466 5jus:YA (4.2) BS02 rna ? GO:0000462 ... P33442 27159452
    365467 5jus:YB (4.2) BS01 rna ? GO:0000028 ... P35997 27159452
    365468 5jus:Z (4.2) BS01 rna ? GO:0002181 ... P05749 27159452
    365469 5jus:ZA (4.2) BS01 rna ? GO:0000054 ... P25443 27159452
    365470 5jus:ZA (4.2) BS02 rna ? GO:0000054 ... P25443 27159452
    365471 5jus:ZB (4.2) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    365472 5jut:AA (4.0) BS01 rna ? GO:0002181 ... P0CX41 27159452
    365473 5jut:AB (4.0) BS01 rna ? GO:0000054 ... P05750 27159452
    365474 5jut:AC (4.0) BS01 rna ? GO:0002181 ... P41057 27159452
    365475 5jut:BA (4.0) BS01 rna ? GO:0002181 ... P04449 27159452
    365476 5jut:BB (4.0) BS01 rna ? GO:0002181 ... P0CX35 27159452
    365477 5jut:BC (4.0) BS01 rna ? GO:0002181 ... P0CX33 27159452
    365478 5jut:CA (4.0) BS01 rna ? GO:0000027 ... P04456 27159452
    365479 5jut:CA (4.0) BS02 rna ? GO:0000027 ... P04456 27159452
    365480 5jut:CB (4.0) BS01 rna ? GO:0000028 ... P26783 27159452
    365481 5jut:CC (4.0) BS01 rna ? GO:0000028 ... P05759 27159452
    365482 5jut:DA (4.0) BS01 rna ? GO:0002181 ... P05743 27159452
    365483 5jut:DA (4.0) BS02 rna ? GO:0002181 ... P05743 27159452
    365484 5jut:DB (4.0) BS01 rna ? GO:0000462 ... P0CX37 27159452
    365485 5jut:DC (4.0) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365486 5jut:DC (4.0) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365487 5jut:DC (4.0) BS03 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365488 5jut:DC (4.0) BS04 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    365489 5jut:DC (4.0) BS05 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    365490 5jut:E (4.0) BS01 rna ? GO:0000055 ... P0CX43 27159452
    365491 5jut:E (4.0) BS02 rna ? GO:0000055 ... P0CX43 27159452
    365492 5jut:EA (4.0) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    365493 5jut:EB (4.0) BS01 rna ? GO:0002181 ... P26786 27159452
    365494 5jut:F (4.0) BS01 rna ? GO:0002181 ... P0CX45 27159452
    365495 5jut:F (4.0) BS02 rna ? GO:0002181 ... P0CX45 27159452
    365496 5jut:FA (4.0) BS01 rna ? GO:0002181 ... P02406 27159452
    365497 5jut:FB (4.0) BS01 rna ? GO:0000462 ... P0CX39 27159452
    365498 5jut:FB (4.0) BS02 rna ? GO:0000462 ... P0CX39 27159452
    365499 5jut:G (4.0) BS01 rna ? GO:0000027 ... P14126 27159452
    365500 5jut:GA (4.0) BS01 rna ? GO:0002181 ... P05747 27159452
    365501 5jut:GB (4.0) BS01 rna ? GO:0000462 ... O13516 27159452
    365502 5jut:H (4.0) BS01 rna ? GO:0002181 ... P10664 27159452
    365503 5jut:H (4.0) BS02 rna ? GO:0002181 ... P10664 27159452
    365504 5jut:HA (4.0) BS01 rna ? GO:0002181 ... P14120 27159452
    365505 5jut:HB (4.0) BS01 rna ? GO:0000054 ... Q08745 27159452
    365506 5jut:I (4.0) BS01 rna ? GO:0000027 ... P26321 27159452
    365507 5jut:I (4.0) BS02 rna ? GO:0000027 ... P26321 27159452
    365508 5jut:IA (4.0) BS01 rna ? GO:0002181 ... P0C2H8 27159452
    365509 5jut:IB (4.0) BS01 rna ? GO:0000028 ... P0CX47 27159452
    365510 5jut:J (4.0) BS01 rna ? GO:0000027 ... Q02326 27159452
    365511 5jut:JA (4.0) BS01 rna ? GO:0002181 ... P38061 27159452
    365512 5jut:JB (4.0) BS01 rna ? GO:0000028 ... P48589 27159452
    365513 5jut:K (4.0) BS01 rna ? GO:0000463 ... P05737 27159452
    365514 5jut:K (4.0) BS02 rna ? GO:0000463 ... P05737 27159452
    365515 5jut:KA (4.0) BS01 rna ? GO:0000027 ... P05744 27159452
    365516 5jut:KB (4.0) BS01 rna ? GO:0000462 ... P05756 27159452
    365517 5jut:KB (4.0) BS02 rna ? GO:0000462 ... P05756 27159452
    365518 5jut:L (4.0) BS01 rna ? GO:0000470 ... P17076 27159452
    365519 5jut:L (4.0) BS02 rna ? GO:0000470 ... P17076 27159452
    365520 5jut:LA (4.0) BS01 rna ? GO:0002181 ... P87262 27159452
    365521 5jut:LB (4.0) BS01 rna ? GO:0000028 ... P06367 27159452
    365522 5jut:M (4.0) BS01 rna ? GO:0002181 ... P05738 27159452
    365523 5jut:MA (4.0) BS01 rna ? GO:0000463 ... P0CX84 27159452
    365524 5jut:MA (4.0) BS02 rna ? GO:0000463 ... P0CX84 27159452
    365525 5jut:MB (4.0) BS01 rna ? GO:0000028 ... Q01855 27159452
    365526 5jut:N (4.0) BS01 rna ? GO:0000027 ... P41805 27159452
    365527 5jut:N (4.0) BS02 rna ? GO:0000027 ... P41805 27159452
    365528 5jut:NA (4.0) BS01 rna ? GO:0002181 ... P05745 27159452
    365529 5jut:NB (4.0) BS01 rna ? GO:0000462 ... P0CX51 27159452
    365530 5jut:O (4.0) BS01 rna ? GO:0000027 ... P0C0W9 27159452
    365531 5jut:O (4.0) BS02 rna ? GO:0000027 ... P0C0W9 27159452
    365532 5jut:OA (4.0) BS01 rna ? GO:0000448 ... P49166 27159452
    365533 5jut:OA (4.0) BS02 rna ? GO:0000448 ... P49166 27159452
    365534 5jut:OB (4.0) BS01 rna ? GO:0000028 ... P02407 27159452
    365535 5jut:P (4.0) BS01 rna ? GO:0000027 ... P0CX53 27159452
    365536 5jut:PA (4.0) BS01 rna ? GO:0002181 ... P49167 27159452
    365537 5jut:PB (4.0) BS01 rna ? GO:0000054 ... P0CX55 27159452
    365538 5jut:Q (4.0) BS01 rna ? GO:0002181 ... Q12690 27159452
    365539 5jut:Q (4.0) BS02 rna ? GO:0002181 ... Q12690 27159452
    365540 5jut:QA (4.0) BS01 rna ? GO:0002181 ... P04650 27159452
    365541 5jut:QA (4.0) BS02 rna ? GO:0002181 ... P04650 27159452
    365542 5jut:QB (4.0) BS01 rna ? GO:0000028 ... P07280 27159452
    365543 5jut:R (4.0) BS01 rna ? GO:0000027 ... P36105 27159452
    365544 5jut:RA (4.0) BS01 rna ? GO:0000027 ... P0CH08 27159452
    365545 5jut:RB (4.0) BS01 rna ? GO:0000462 ... P38701 27159452
    365546 5jut:S (4.0) BS01 rna ? GO:0002181 ... P05748 27159452
    365547 5jut:S (4.0) BS02 rna ? GO:0002181 ... P05748 27159452
    365548 5jut:T (4.0) BS01 rna ? GO:0000470 ... P26784 27159452
    365549 5jut:TA (4.0) BS01 rna ? GO:0002181 ... P0CX27 27159452
    365550 5jut:TA (4.0) BS02 rna ? GO:0002181 ... P0CX27 27159452
    365551 5jut:TB (4.0) BS01 rna ? GO:0002181 ... P0C0W1 27159452
    365552 5jut:U (4.0) BS01 rna ? GO:0000448 ... P05740 27159452
    365553 5jut:U (4.0) BS02 rna ? GO:0000448 ... P05740 27159452
    365554 5jut:UA (4.0) BS01 rna ? GO:0002181 ... P0CX25 27159452
    365555 5jut:UB (4.0) BS01 rna ? GO:0000462 ... P0CX29 27159452
    365556 5jut:V (4.0) BS01 rna ? GO:0002181 ... P0CX49 27159452
    365557 5jut:VA (4.0) BS01 rna ? GO:0000027 ... P05317 27159452
    365558 5jut:VB (4.0) BS01 rna ? GO:0000462 ... P0CX31 27159452
    365559 5jut:W (4.0) BS01 rna ? GO:0002181 ... P0CX82 27159452
    365560 5jut:W (4.0) BS02 rna ? GO:0002181 ... P0CX82 27159452
    365561 5jut:WA (4.0) BS01 rna ? GO:0001965 ... P38011 27159452
    365562 5jut:WB (4.0) BS01 rna ? GO:0002181 ... Q3E792 27159452
    365563 5jut:WB (4.0) BS02 rna ? GO:0002181 ... Q3E792 27159452
    365564 5jut:X (4.0) BS01 rna ? GO:0002181 ... P0CX23 27159452
    365565 5jut:X (4.0) BS02 rna ? GO:0002181 ... P0CX23 27159452
    365566 5jut:XA (4.0) BS01 rna ? GO:0000028 ... P32905 27159452
    365567 5jut:XB (4.0) BS01 rna ? GO:0000054 ... P39938 27159452
    365568 5jut:Y (4.0) BS01 rna ? GO:0002181 ... Q02753 27159452
    365569 5jut:Y (4.0) BS02 rna ? GO:0002181 ... Q02753 27159452
    365570 5jut:YA (4.0) BS01 rna ? GO:0000462 ... P33442 27159452
    365571 5jut:YB (4.0) BS01 rna ? GO:0000028 ... P35997 27159452
    365572 5jut:Z (4.0) BS01 rna ? GO:0002181 ... P05749 27159452
    365573 5jut:ZA (4.0) BS01 rna ? GO:0000054 ... P25443 27159452
    365574 5jut:ZA (4.0) BS02 rna ? GO:0000054 ... P25443 27159452
    365575 5jut:ZB (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 27159452
    365576 5juu:AA (4.0) BS01 rna ? GO:0002181 ... P0CX41 27159452
    365577 5juu:AB (4.0) BS01 rna ? GO:0000054 ... P05750 27159452
    365578 5juu:AB (4.0) BS02 rna ? GO:0000054 ... P05750 27159452
    365579 5juu:AC (4.0) BS01 rna ? GO:0002181 ... P41057 27159452
    365580 5juu:BA (4.0) BS01 rna ? GO:0002181 ... P04449 27159452
    365581 5juu:BB (4.0) BS01 rna ? GO:0002181 ... P0CX35 27159452
    365582 5juu:BC (4.0) BS01 rna ? GO:0002181 ... P0CX33 27159452
    365583 5juu:CA (4.0) BS01 rna ? GO:0000027 ... P04456 27159452
    365584 5juu:CA (4.0) BS02 rna ? GO:0000027 ... P04456 27159452
    365585 5juu:CB (4.0) BS01 rna ? GO:0000028 ... P26783 27159452
    365586 5juu:CB (4.0) BS02 rna ? GO:0000028 ... P26783 27159452
    365587 5juu:CC (4.0) BS01 rna ? GO:0000028 ... P05759 27159452
    365588 5juu:DA (4.0) BS01 rna ? GO:0002181 ... P05743 27159452
    365589 5juu:DA (4.0) BS02 rna ? GO:0002181 ... P05743 27159452
    365590 5juu:DB (4.0) BS01 rna ? GO:0000462 ... P0CX37 27159452
    365591 5juu:DC (4.0) BS01 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365592 5juu:DC (4.0) BS02 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365593 5juu:DC (4.0) BS03 rna 3.6.5.- GO:0003746 ... P32324 27159452
    365594 5juu:DC (4.0) BS04 GDP 3.6.5.- GO:0003746 ... P32324 27159452
    365595 5juu:DC (4.0) BS05 SO1 3.6.5.- GO:0003746 ... P32324 27159452
    365596 5juu:E (4.0) BS01 rna ? GO:0000055 ... P0CX43 27159452
    365597 5juu:E (4.0) BS02 rna ? GO:0000055 ... P0CX43 27159452
    365598 5juu:EA (4.0) BS01 rna ? GO:0002181 ... P0C2H6 27159452
    365599 5juu:EB (4.0) BS01 rna ? GO:0002181 ... P26786 27159452
    365600 5juu:F (4.0) BS01 rna ? GO:0002181 ... P0CX45 27159452

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).