SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    370401 5l3p:E (3.7) BS01 rna ? GO:0000027 ... P60438 27226493
    370402 5l3p:F (3.7) BS01 rna ? GO:0001070 ... P60723 27226493
    370403 5l3p:G (3.7) BS01 rna ? GO:0000027 ... P62399 27226493
    370404 5l3p:G (3.7) BS02 rna ? GO:0000027 ... P62399 27226493
    370405 5l3p:G (3.7) BS03 rna ? GO:0000027 ... P62399 27226493
    370406 5l3p:H (3.7) BS01 rna ? GO:0000027 ... P0AG55 27226493
    370407 5l3p:I (3.7) BS01 rna ? GO:0002181 ... P0A7R1 27226493
    370408 5l3p:J (3.7) BS01 rna ? GO:0002181 ... P0A7J3 27226493
    370409 5l3p:K (3.7) BS01 rna ? GO:0000027 ... P0A7J7 27226493
    370410 5l3p:N (3.7) BS01 rna ? GO:0002181 ... P0AA10 27226493
    370411 5l3p:O (3.7) BS01 rna ? GO:0002181 ... P0ADY3 27226493
    370412 5l3p:O (3.7) BS02 rna ? GO:0002181 ... P0ADY3 27226493
    370413 5l3p:P (3.7) BS01 rna ? GO:0002181 ... P02413 27226493
    370414 5l3p:Q (3.7) BS01 rna ? GO:0000027 ... P0ADY7 27226493
    370415 5l3p:Q (3.7) BS02 rna ? GO:0000027 ... P0ADY7 27226493
    370416 5l3p:R (3.7) BS01 rna ? GO:0000027 ... P0AG44 27226493
    370417 5l3p:S (3.7) BS01 rna ? GO:0002181 ... P0C018 27226493
    370418 5l3p:S (3.7) BS02 rna ? GO:0002181 ... P0C018 27226493
    370419 5l3p:T (3.7) BS01 rna ? GO:0000027 ... P0A7K6 27226493
    370420 5l3p:T (3.7) BS02 rna ? GO:0000027 ... P0A7K6 27226493
    370421 5l3p:U (3.7) BS01 rna ? GO:0000027 ... P0A7L3 27226493
    370422 5l3p:V (3.7) BS01 rna ? GO:0002181 ... P0AG48 27226493
    370423 5l3p:W (3.7) BS01 rna ? GO:0002181 ... P61175 27226493
    370424 5l3p:X (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 27226493
    370425 5l3p:Y (3.7) BS01 rna ? GO:0000027 ... P60624 27226493
    370426 5l3p:Z (3.7) BS01 rna ? GO:0000027 ... P68919 27226493
    370427 5l3p:b (3.7) BS01 rna ? GO:0000028 ... P0A7V0 27226493
    370428 5l3p:c (3.7) BS01 rna ? GO:0000028 ... P0A7V3 27226493
    370429 5l3p:d (3.7) BS01 rna ? GO:0000028 ... P0A7V8 27226493
    370430 5l3p:e (3.7) BS01 rna ? GO:0000028 ... P0A7W1 27226493
    370431 5l3p:f (3.7) BS01 rna ? GO:0002181 ... P02358 27226493
    370432 5l3p:g (3.7) BS01 rna ? GO:0000028 ... P02359 27226493
    370433 5l3p:h (3.7) BS01 rna ? GO:0000028 ... P0A7W7 27226493
    370434 5l3p:i (3.7) BS01 rna ? GO:0000049 ... P0A7X3 27226493
    370435 5l3p:i (3.7) BS02 rna ? GO:0000049 ... P0A7X3 27226493
    370436 5l3p:j (3.7) BS01 rna ? GO:0000049 ... P0A7R5 27226493
    370437 5l3p:k (3.7) BS01 rna ? GO:0002181 ... P0A7R9 27226493
    370438 5l3p:l (3.7) BS01 rna ? GO:0000049 ... P0A7S3 27226493
    370439 5l3p:m (3.7) BS01 rna ? GO:0000049 ... P0A7S9 27226493
    370440 5l3p:n (3.7) BS01 rna ? GO:0003735 ... P0AG59 27226493
    370441 5l3p:o (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 27226493
    370442 5l3p:o (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 27226493
    370443 5l3p:p (3.7) BS01 rna ? GO:0000028 ... P0A7T3 27226493
    370444 5l3p:q (3.7) BS01 rna ? GO:0000028 ... P0AG63 27226493
    370445 5l3p:r (3.7) BS01 rna ? GO:0002181 ... P0A7T7 27226493
    370446 5l3p:s (3.7) BS01 rna ? GO:0000028 ... P0A7U3 27226493
    370447 5l3p:t (3.7) BS01 rna ? GO:0000028 ... P0A7U7 27226493
    370448 5l3p:u (3.7) BS01 rna ? GO:0000028 ... P68679 27226493
    370449 5l3p:z (3.7) BS01 rna 2.7.6.5 GO:0015969 ... P0AG20 27226493
    370450 5l3p:z (3.7) BS02 rna 2.7.6.5 GO:0015969 ... P0AG20 27226493
    370451 5l3q:A (3.2) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    370452 5l3q:A (3.2) BS02 AMP 3.6.5.4 GO:0003924 ... P61011 27241309
    370453 5l3q:A (3.2) BS03 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    370454 5l3q:B (3.2) BS01 GNP ? GO:0003723 ... P08240 27241309
    370455 5l3q:B (3.2) BS02 AMP ? GO:0003723 ... P08240 27241309
    370456 5l3q:B (3.2) BS03 GNP ? GO:0003723 ... P08240 27241309
    370457 5l3q:C (3.2) BS01 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    370458 5l3q:C (3.2) BS02 GNP 3.6.5.4 GO:0003924 ... P61011 27241309
    370459 5l3q:D (3.2) BS01 GNP ? GO:0003723 ... P08240 27241309
    370460 5l3q:D (3.2) BS02 AMP ? GO:0003723 ... P08240 27241309
    370461 5l3q:D (3.2) BS03 GNP ? GO:0003723 ... P08240 27241309
    370462 5l3s:A (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370463 5l3s:A (1.9) BS02 G 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370464 5l3s:B (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370465 5l3s:B (1.9) BS02 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370466 5l3s:C (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370467 5l3s:C (1.9) BS02 G 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370468 5l3s:C (1.9) BS03 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370469 5l3s:D (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370470 5l3s:E (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370471 5l3s:E (1.9) BS02 G 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370472 5l3s:F (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370473 5l3s:G (1.9) BS01 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370474 5l3s:G (1.9) BS02 G 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370475 5l3s:G (1.9) BS03 GNP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370476 5l3s:H (1.9) BS01 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370477 5l3s:H (1.9) BS02 GNP 3.6.5.4 GO:0005525 ... P27414 27241309
    370478 5l3t:A (4.927) BS01 peptide ? GO:0000278 ... P46674 27422657
    370479 5l3u:E (1.23) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    370480 5l3u:E (1.23) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370481 5l3u:E (1.23) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370482 5l3u:E (1.23) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370483 5l3u:E (1.23) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370484 5l3u:E (1.23) BS06 6NG 3.4.24.27 GO:0004222 ... P00800 27933956 MOAD: Kd=0.354uM
    370485 5l3v:A (2.3) BS01 GDP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370486 5l3v:B (2.3) BS01 GDP 3.6.5.4 GO:0003924 ... Q97ZE7 27241309
    370487 5l3w:A (2.4) BS01 GDP 3.6.5.4 GO:0005525 ... P27414 27241309
    370488 5l3y:A (1.7) BS01 CU6 ? GO:0005576 ... P22629 27385206
    370489 5l3z:A (1.95) BS01 NAP ? GO:0000166 ... G9VYV4 27617849
    370490 5l41:E (1.25) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    370491 5l41:E (1.25) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370492 5l41:E (1.25) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370493 5l41:E (1.25) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370494 5l41:E (1.25) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    370495 5l41:E (1.25) BS06 6QC 3.4.24.27 GO:0004222 ... P00800 27933956 MOAD: Kd=0.31uM
    370496 5l42:A (2.1) BS01 6J6 1.5.1.33 GO:0004155 ... Q01782 28282886
    370497 5l42:A (2.1) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370498 5l42:B (2.1) BS01 6J6 1.5.1.33 GO:0004155 ... Q01782 28282886
    370499 5l42:B (2.1) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370500 5l42:C (2.1) BS01 6J6 1.5.1.33 GO:0004155 ... Q01782 28282886
    370501 5l42:C (2.1) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370502 5l42:D (2.1) BS01 6J6 1.5.1.33 GO:0004155 ... Q01782 28282886
    370503 5l42:D (2.1) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370504 5l43:A (1.8) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    370505 5l43:A (1.8) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    370506 5l43:B (1.8) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    370507 5l43:B (1.8) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    370508 5l44:A (1.75) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    370509 5l44:A (1.75) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    370510 5l44:A (1.75) BS03 K26 ? GO:0004180 ... A0A1L1QK30 27754586
    370511 5l44:B (1.75) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    370512 5l44:B (1.75) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    370513 5l44:B (1.75) BS03 K26 ? GO:0004180 ... A0A1L1QK30 27754586
    370514 5l46:A (3.09) BS01 FAD 1.5.8.4 GO:0003723 ... Q9UI17 27486859
    370515 5l46:B (3.09) BS01 FAD 1.5.8.4 GO:0003723 ... Q9UI17 27486859
    370516 5l47:C (3.3) BS01 6JA ? GO:0004888 ... Q7NDN8 27986812
    370517 5l4f:B (1.48) BS01 6J1 ? GO:0001523 ... P02766 27668830 MOAD: Kd=1.3uM
    370518 5l4g:H (3.9) BS01 ATP ? GO:0000502 ... P35998 27342858
    370519 5l4g:H (3.9) BS02 ATP ? GO:0000502 ... P35998 27342858
    370520 5l4g:I (3.9) BS01 ATP ? GO:0000502 ... P62191 27342858
    370521 5l4g:I (3.9) BS02 ATP ? GO:0000502 ... P62191 27342858
    370522 5l4g:J (3.9) BS01 ADP ? GO:0000502 ... P62195 27342858
    370523 5l4g:K (3.9) BS01 ATP ? GO:0000502 ... P43686 27342858
    370524 5l4g:L (3.9) BS01 ATP ? GO:0000502 ... P62333 27342858
    370525 5l4g:L (3.9) BS02 ATP ? GO:0000502 ... P62333 27342858
    370526 5l4g:M (3.9) BS01 ATP ? GO:0000502 ... P17980 27342858
    370527 5l4h:C (3.3) BS01 6JW ? GO:0004888 ... Q7NDN8 27986812
    370528 5l4h:D (3.3) BS01 6JW ? GO:0004888 ... Q7NDN8 27986812
    370529 5l4h:E (3.3) BS01 6JW ? GO:0004888 ... Q7NDN8 27986812
    370530 5l4i:A (1.45) BS01 6J3 ? GO:0001523 ... P02766 27668830 MOAD: Kd=0.26uM
    370531 5l4i:B (1.45) BS01 6J3 ? GO:0001523 ... P02766 27668830 MOAD: Kd=0.26uM
    370532 5l4j:A (1.62) BS01 6JD ? GO:0001523 ... P02766 27668830 MOAD: Kd=52uM
    370533 5l4l:A (1.2) BS01 NAP ? GO:0000166 ... G9VYV4 27617849
    370534 5l4l:A (1.2) BS02 7OX ? GO:0000166 ... G9VYV4 27617849 MOAD: ic50=75uM
    370535 5l4m:A (1.581) BS01 SBK ? GO:0001523 ... P02766 27668830 MOAD: Kd=4.6uM
    370536 5l4m:B (1.581) BS01 SBK ? GO:0001523 ... P02766 27668830 MOAD: Kd=4.6uM
    370537 5l4n:A (2.35) BS01 6QT 1.5.1.33 GO:0004155 ... Q01782 28282886 MOAD: ic50=57uM
    370538 5l4n:A (2.35) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370539 5l4n:B (2.35) BS01 6QT 1.5.1.33 GO:0004155 ... Q01782 28282886 MOAD: ic50=57uM
    370540 5l4n:B (2.35) BS02 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370541 5l4n:C (2.35) BS01 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370542 5l4n:D (2.35) BS01 NDP 1.5.1.33 GO:0004155 ... Q01782 28282886
    370543 5l4q:A (1.97) BS01 LKB 2.7.11.1 GO:0004672 ... Q2M2I8 31136173 BindingDB: Kd=53nM, Ki=541nM, IC50=1170nM
    370544 5l4q:B (1.97) BS01 LKB 2.7.11.1 GO:0004672 ... Q2M2I8 31136173 BindingDB: Kd=53nM, Ki=541nM, IC50=1170nM
    370545 5l4r:A (1.45) BS01 CPT ? GO:0031410 ... P02883 27482735
    370546 5l4r:A (1.45) BS02 73M ? GO:0031410 ... P02883 27482735
    370547 5l4s:A (1.41) BS01 6KX 1.3.1.82 GO:0005737 ... Q6WAU1 27411040
    370548 5l4s:A (1.41) BS02 NAP 1.3.1.82 GO:0005737 ... Q6WAU1 27411040
    370549 5l4t:A (1.9) BS01 6LS ? GO:0007155 ... P08191 N/A
    370550 5l4t:B (1.9) BS01 6LS ? GO:0007155 ... P08191 N/A
    370551 5l4u:A (2.1) BS01 6KS ? GO:0007155 ... P08191 N/A
    370552 5l4u:B (2.1) BS01 6KS ? GO:0007155 ... P08191 N/A
    370553 5l4v:A (2.99) BS01 6KW ? GO:0007155 ... P08191 N/A
    370554 5l4v:B (2.99) BS01 6KW ? GO:0007155 ... P08191 N/A
    370555 5l4v:C (2.99) BS01 6KW ? GO:0007155 ... P08191 N/A
    370556 5l4w:A (1.9) BS01 6KH ? GO:0007155 ... P08191 N/A
    370557 5l4w:B (1.9) BS01 6KH ? GO:0007155 ... P08191 N/A
    370558 5l4w:C (1.9) BS01 6KH ? GO:0007155 ... P08191 N/A
    370559 5l4x:A (1.9) BS01 6KU ? GO:0007155 ... P08191 N/A
    370560 5l4x:B (1.9) BS01 6KU ? GO:0007155 ... P08191 N/A
    370561 5l4y:A (1.9) BS01 6K3 ? GO:0007155 ... P08191 N/A
    370562 5l4y:B (1.9) BS01 6K3 ? GO:0007155 ... P08191 N/A
    370563 5l52:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    370564 5l52:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    370565 5l52:K (2.7) BS01 6N5 3.4.25.1 GO:0004298 ... P30656 27789522
    370566 5l52:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370567 5l52:L (2.7) BS01 6N5 3.4.25.1 GO:0000502 ... P23724 27789522
    370568 5l52:N (2.7) BS01 6N5 3.4.25.1 GO:0000502 ... P38624 27789522
    370569 5l52:N (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    370570 5l52:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    370571 5l52:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370572 5l52:Y (2.7) BS02 6N5 3.4.25.1 GO:0004298 ... P30656 27789522
    370573 5l52:Z (2.7) BS01 6N5 3.4.25.1 GO:0000502 ... P23724 27789522
    370574 5l52:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    370575 5l52:b (2.7) BS01 6N5 3.4.25.1 GO:0000502 ... P38624 27789522
    370576 5l53:A (2.24) BS01 NAP 1.1.1.- GO:0000166 ... Q06ZW2 27411040
    370577 5l54:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    370578 5l54:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    370579 5l54:K (2.8) BS01 79P 3.4.25.1 GO:0004298 ... P30656 27789522
    370580 5l54:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370581 5l54:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    370582 5l54:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    370583 5l54:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370584 5l54:Y (2.8) BS02 79P 3.4.25.1 GO:0004298 ... P30656 27789522
    370585 5l54:Z (2.8) BS01 79P 3.4.25.1 GO:0000502 ... P23724 27789522
    370586 5l54:Z (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    370587 5l55:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    370588 5l55:K (2.9) BS01 6NV 3.4.25.1 GO:0004298 ... P30656 27789522
    370589 5l55:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370590 5l55:L (2.9) BS01 6NV 3.4.25.1 GO:0000502 ... P23724 27789522
    370591 5l55:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    370592 5l55:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    370593 5l55:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    370594 5l55:Y (2.9) BS02 6NV 3.4.25.1 GO:0004298 ... P30656 27789522
    370595 5l55:Z (2.9) BS01 6NV 3.4.25.1 GO:0000502 ... P23724 27789522
    370596 5l55:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    370597 5l57:A (2.695) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 28002956
    370598 5l57:A (2.695) BS02 6N3 1.1.1.42 GO:0000287 ... O75874 28002956
    370599 5l58:A (3.04) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 28002956
    370600 5l58:A (3.04) BS02 6MX 1.1.1.42 GO:0000287 ... O75874 28002956

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).