SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    372601 5li0:S (3.8) BS02 rna ? GO:0003735 ... Q2FZ42 27906650
    372602 5li0:T (3.8) BS01 rna ? GO:0000027 ... Q2FXQ1 27906650
    372603 5li0:U (3.8) BS01 rna ? GO:0003723 ... Q2FXS8 27906650
    372604 5li0:V (3.8) BS01 rna ? GO:0003735 ... Q2FW11 27906650
    372605 5li0:W (3.8) BS01 rna ? GO:0003735 ... Q2FW08 27906650
    372606 5li0:X (3.8) BS01 rna ? GO:0003723 ... Q2FW17 27906650
    372607 5li0:Y (3.8) BS01 rna ? GO:0003735 ... Q2G0S0 27906650
    372608 5li0:Z (3.8) BS01 rna ? GO:0003735 ... Q2FXT0 27906650
    372609 5li0:Z (3.8) BS02 rna ? GO:0003735 ... Q2FXT0 27906650
    372610 5li0:b (3.8) BS01 rna ? GO:0003735 ... Q2FZ25 27906650
    372611 5li0:c (3.8) BS01 rna ? GO:0003676 ... Q2FW12 27906650
    372612 5li0:d (3.8) BS01 rna ? GO:0003723 ... Q2FXK6 27906650
    372613 5li0:e (3.8) BS01 rna ? GO:0003723 ... Q2FW23 27906650
    372614 5li0:f (3.8) BS01 rna ? GO:0003735 ... Q2G113 27906650
    372615 5li0:g (3.8) BS01 rna ? GO:0000028 ... P48940 27906650
    372616 5li0:h (3.8) BS01 rna ? GO:0003735 ... Q2FW20 27906650
    372617 5li0:i (3.8) BS01 rna ? GO:0003723 ... Q2FW39 27906650
    372618 5li0:j (3.8) BS01 rna ? GO:0000049 ... Q931G5 27906650
    372619 5li0:k (3.8) BS01 rna ? GO:0003735 ... Q2FW31 27906650
    372620 5li0:l (3.8) BS01 rna ? GO:0000049 ... Q5HID0 27906650
    372621 5li0:m (3.8) BS01 rna ? GO:0000049 ... Q2FW30 27906650
    372622 5li0:n (3.8) BS01 rna ? GO:0003735 ... Q2FW19 27906650
    372623 5li0:o (3.8) BS01 rna ? GO:0003735 ... Q2G2Q1 27906650
    372624 5li0:o (3.8) BS02 rna ? GO:0003735 ... Q2G2Q1 27906650
    372625 5li0:p (3.8) BS01 rna ? GO:0003735 ... Q2FZ45 27906650
    372626 5li0:q (3.8) BS01 rna ? GO:0003735 ... Q2FW15 27906650
    372627 5li0:r (3.8) BS01 rna ? GO:0003735 ... Q2G111 27906650
    372628 5li0:s (3.8) BS01 rna ? GO:0000028 ... Q2FW10 27906650
    372629 5li0:t (3.8) BS01 rna ? GO:0003723 ... Q2FXY6 27906650
    372630 5li1:A (2.0) BS01 peptide 2.7.11.13 GO:0004672 ... P41743 27554858
    372631 5li1:A (2.0) BS02 ANP 2.7.11.13 GO:0004672 ... P41743 27554858
    372632 5li1:A (2.0) BS03 MG 2.7.11.13 GO:0004672 ... P41743 27554858
    372633 5li1:A (2.0) BS04 MG 2.7.11.13 GO:0004672 ... P41743 27554858
    372634 5li3:A (2.4) BS01 ZN 3.5.1.- GO:0004407 ... Q9HXM1 27756124
    372635 5li3:A (2.4) BS02 9RB 3.5.1.- GO:0004407 ... Q9HXM1 27756124 MOAD: ic50=0.053uM
    372636 5li3:B (2.4) BS01 9RB 3.5.1.- GO:0004407 ... Q9HXM1 27756124 MOAD: ic50=0.053uM
    372637 5li3:B (2.4) BS02 ZN 3.5.1.- GO:0004407 ... Q9HXM1 27756124
    372638 5li3:B (2.4) BS03 9RB 3.5.1.- GO:0004407 ... Q9HXM1 27756124 MOAD: ic50=0.053uM
    372639 5li6:A (1.95) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372640 5li6:A (1.95) BS02 6XF 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372641 5li6:B (1.95) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372642 5li6:B (1.95) BS02 6XF 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372643 5li7:A (1.58) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372644 5li7:A (1.58) BS02 6XD 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372645 5li7:B (1.58) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372646 5li7:B (1.58) BS02 6XD 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372647 5li8:A (1.83) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372648 5li8:A (1.83) BS02 KKK 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372649 5li9:A (1.79) BS01 ACP 2.7.11.13 GO:0004672 ... P41743 27554858
    372650 5lia:A (1.92) BS01 MAN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    372651 5lia:A (1.92) BS02 6XN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639 MOAD: ic50=0.001uM
    372652 5lia:A (1.92) BS03 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    372653 5lia:A (1.92) BS04 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    372654 5lia:A (1.92) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    372655 5lid:A (4.5) BS01 6XY ? GO:0004888 ... P0C7B7 27791038
    372656 5lid:C (4.5) BS01 6XY ? GO:0004888 ... P0C7B7 27791038
    372657 5lid:E (4.5) BS01 6XY ? GO:0004888 ... P0C7B7 27791038
    372658 5lid:F (4.5) BS01 6XY ? GO:0004888 ... P0C7B7 27791038
    372659 5lid:H (4.5) BS01 6XY ? GO:0004888 ... P0C7B7 27791038
    372660 5lie:A (1.799) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372661 5lie:A (1.799) BS02 IMD 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372662 5lie:B (1.799) BS01 HEM 1.14.-.- GO:0004497 ... P9WPN8 27932461
    372663 5lif:E (1.31) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27959500
    372664 5lif:E (1.31) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    372665 5lif:E (1.31) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    372666 5lif:E (1.31) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    372667 5lif:E (1.31) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    372668 5lif:E (1.31) BS06 6XO 3.4.24.27 GO:0004222 ... P00800 27959500 MOAD: Kd=1.34uM
    372669 5lih:A (3.25) BS01 peptide 2.7.11.13 GO:0004672 ... P41743 27554858
    372670 5lih:A (3.25) BS02 ADP 2.7.11.13 GO:0004672 ... P41743 27554858
    372671 5lih:A (3.25) BS03 AF3 2.7.11.13 GO:0004672 ... P41743 27554858
    372672 5lih:A (3.25) BS04 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    372673 5lih:A (3.25) BS05 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    372674 5lih:A (3.25) BS06 AF3 2.7.11.13 GO:0004672 ... P41743 27554858
    372675 5lih:B (3.25) BS01 peptide 2.7.11.13 GO:0004672 ... P41743 27554858
    372676 5lih:B (3.25) BS02 ADP 2.7.11.13 GO:0004672 ... P41743 27554858
    372677 5lih:B (3.25) BS03 AF3 2.7.11.13 GO:0004672 ... P41743 27554858
    372678 5lih:B (3.25) BS04 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    372679 5lih:B (3.25) BS05 AF3 2.7.11.13 GO:0004672 ... P41743 27554858
    372680 5lik:X (2.05) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042
    372681 5lik:X (2.05) BS02 W8X 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=3.7e+3nM
    372682 5lil:A (3.35) BS01 ATP 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372683 5lil:A (3.35) BS02 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372684 5lil:A (3.35) BS03 ATP 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372685 5lil:B (3.35) BS01 ATP 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372686 5lil:B (3.35) BS02 ATP 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372687 5lil:B (3.35) BS03 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    372688 5lip:A (2.9) BS01 CA 3.1.1.3 GO:0004806 ... P22088 9660188
    372689 5lip:A (2.9) BS02 OCP 3.1.1.3 GO:0004806 ... P22088 9660188
    372690 5lis:B (2.293) BS01 peptide ? GO:0005179 ... P01315 27599736
    372691 5liu:X (1.75) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042
    372692 5liu:X (1.75) BS02 388 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=4.4e+3nM
    372693 5liv:A (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    372694 5liv:B (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    372695 5liv:C (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    372696 5liv:D (2.67) BS01 HEM 1.14.15.19 GO:0004497 ... A9FDB7 27878817
    372697 5liw:X (1.75) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042
    372698 5liw:X (1.75) BS02 1WX 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=3.4e+3nM
    372699 5liw:X (1.75) BS03 1WX 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=3.4e+3nM
    372700 5lix:X (1.95) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042
    372701 5lix:X (1.95) BS02 MK4 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=4.3e+2nM
    372702 5liy:X (2.05) BS01 NAP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042
    372703 5liy:X (2.05) BS02 DQP 1.1.1.300
    1.1.1.54
    GO:0001523 ... O60218 27359042 BindingDB: IC50=8e+1nM
    372704 5lj0:A (1.82) BS01 6XX 3.6.1.- N/A Q6PL18 27530368 MOAD: ic50=0.00000001M
    BindingDB: IC50=50nM
    372705 5lj1:A (1.9) BS01 6XX ? N/A O60885 27530368 MOAD: ic50>0.0000316M
    BindingDB: IC50=25119nM
    372706 5lj2:A (1.19) BS01 6XW ? N/A O60885 27530368 MOAD: ic50=10uM
    372707 5lj3:A (3.8) BS01 rna ? GO:0000244 ... P33334 27459055
    372708 5lj3:A (3.8) BS02 rna ? GO:0000244 ... P33334 27459055
    372709 5lj3:A (3.8) BS03 rna ? GO:0000244 ... P33334 27459055
    372710 5lj3:A (3.8) BS04 rna ? GO:0000244 ... P33334 27459055
    372711 5lj3:A (3.8) BS05 rna ? GO:0000244 ... P33334 27459055
    372712 5lj3:C (3.8) BS01 rna ? GO:0000244 ... P36048 27459055
    372713 5lj3:C (3.8) BS02 GTP ? GO:0000244 ... P36048 27459055
    372714 5lj3:D (3.8) BS01 rna ? GO:0000349 ... P28320 27459055
    372715 5lj3:D (3.8) BS02 rna ? GO:0000349 ... P28320 27459055
    372716 5lj3:D (3.8) BS03 rna ? GO:0000349 ... P28320 27459055
    372717 5lj3:D (3.8) BS04 rna ? GO:0000349 ... P28320 27459055
    372718 5lj3:D (3.8) BS05 ZN ? GO:0000349 ... P28320 27459055
    372719 5lj3:F (3.8) BS01 rna ? GO:0000398 ... P53854 27459055
    372720 5lj3:F (3.8) BS02 rna ? GO:0000398 ... P53854 27459055
    372721 5lj3:G (3.8) BS01 rna ? GO:0000350 ... P21374 27459055
    372722 5lj3:G (3.8) BS02 rna ? GO:0000350 ... P21374 27459055
    372723 5lj3:G (3.8) BS03 rna ? GO:0000350 ... P21374 27459055
    372724 5lj3:H (3.8) BS01 rna N/A GO:0003723 ... N/A 27459055
    372725 5lj3:J (3.8) BS01 rna ? GO:0000398 ... Q12417 27459055
    372726 5lj3:K (3.8) BS01 rna ? GO:0000350 ... P28004 27459055
    372727 5lj3:K (3.8) BS02 rna ? GO:0000350 ... P28004 27459055
    372728 5lj3:L (3.8) BS01 rna ? GO:0000282 ... P25337 27459055
    372729 5lj3:L (3.8) BS02 rna ? GO:0000282 ... P25337 27459055
    372730 5lj3:L (3.8) BS03 ZN ? GO:0000282 ... P25337 27459055
    372731 5lj3:L (3.8) BS04 ZN ? GO:0000282 ... P25337 27459055
    372732 5lj3:L (3.8) BS05 ZN ? GO:0000282 ... P25337 27459055
    372733 5lj3:M (3.8) BS01 rna ? GO:0000387 ... Q12046 27459055
    372734 5lj3:M (3.8) BS02 ZN ? GO:0000387 ... Q12046 27459055
    372735 5lj3:N (3.8) BS01 rna ? GO:0000398 ... P38241 27459055
    372736 5lj3:N (3.8) BS02 ZN ? GO:0000398 ... P38241 27459055
    372737 5lj3:N (3.8) BS03 ZN ? GO:0000398 ... P38241 27459055
    372738 5lj3:O (3.8) BS01 rna ? GO:0000350 ... Q03654 27459055
    372739 5lj3:P (3.8) BS01 rna ? GO:0000398 ... Q03772 27459055
    372740 5lj3:P (3.8) BS02 rna ? GO:0000398 ... Q03772 27459055
    372741 5lj3:P (3.8) BS03 rna ? GO:0000398 ... Q03772 27459055
    372742 5lj3:R (3.8) BS01 rna ? GO:0000398 ... Q03375 27459055
    372743 5lj3:R (3.8) BS02 rna ? GO:0000398 ... Q03375 27459055
    372744 5lj3:S (3.8) BS01 rna ? GO:0000245 ... Q12309 27459055
    372745 5lj3:W (3.8) BS01 rna ? GO:0000398 ... Q08963 27459055
    372746 5lj3:Y (3.8) BS01 rna ? GO:0000398 ... P40567 27459055
    372747 5lj3:b (3.8) BS01 rna ? GO:0000243 ... P40018 27459055
    372748 5lj3:d (3.8) BS01 rna ? GO:0000243 ... P43321 27459055
    372749 5lj3:f (3.8) BS01 rna ? GO:0000243 ... P54999 27459055
    372750 5lj3:g (3.8) BS01 rna ? GO:0000243 ... P40204 27459055
    372751 5lj3:h (3.8) BS01 rna ? GO:0000243 ... Q02260 27459055
    372752 5lj3:j (3.8) BS01 rna ? GO:0000243 ... Q06217 27459055
    372753 5lj3:l (3.8) BS01 rna ? GO:0000243 ... Q02260 27459055
    372754 5lj3:m (3.8) BS01 rna ? GO:0000243 ... Q06217 27459055
    372755 5lj3:n (3.8) BS01 rna ? GO:0000243 ... P43321 27459055
    372756 5lj3:x (3.8) BS01 rna N/A N/A N/A 27459055
    372757 5lj5:A (10.0) BS01 rna ? GO:0000244 ... P33334 27459055
    372758 5lj5:A (10.0) BS02 rna ? GO:0000244 ... P33334 27459055
    372759 5lj5:A (10.0) BS03 rna ? GO:0000244 ... P33334 27459055
    372760 5lj5:A (10.0) BS04 rna ? GO:0000244 ... P33334 27459055
    372761 5lj5:A (10.0) BS05 rna ? GO:0000244 ... P33334 27459055
    372762 5lj5:C (10.0) BS01 rna ? GO:0000244 ... P36048 27459055
    372763 5lj5:C (10.0) BS02 GTP ? GO:0000244 ... P36048 27459055
    372764 5lj5:D (10.0) BS01 rna ? GO:0000349 ... P28320 27459055
    372765 5lj5:D (10.0) BS02 rna ? GO:0000349 ... P28320 27459055
    372766 5lj5:D (10.0) BS03 rna ? GO:0000349 ... P28320 27459055
    372767 5lj5:D (10.0) BS04 rna ? GO:0000349 ... P28320 27459055
    372768 5lj5:D (10.0) BS05 ZN ? GO:0000349 ... P28320 27459055
    372769 5lj5:F (10.0) BS01 rna ? GO:0000398 ... P53854 27459055
    372770 5lj5:F (10.0) BS02 rna ? GO:0000398 ... P53854 27459055
    372771 5lj5:G (10.0) BS01 rna ? GO:0000350 ... P21374 27459055
    372772 5lj5:G (10.0) BS02 rna ? GO:0000350 ... P21374 27459055
    372773 5lj5:G (10.0) BS03 rna ? GO:0000350 ... P21374 27459055
    372774 5lj5:H (10.0) BS01 rna N/A GO:0003723 ... N/A 27459055
    372775 5lj5:J (10.0) BS01 rna ? GO:0000398 ... Q12417 27459055
    372776 5lj5:K (10.0) BS01 rna ? GO:0000350 ... P28004 27459055
    372777 5lj5:K (10.0) BS02 rna ? GO:0000350 ... P28004 27459055
    372778 5lj5:L (10.0) BS01 rna ? GO:0000282 ... P25337 27459055
    372779 5lj5:L (10.0) BS02 rna ? GO:0000282 ... P25337 27459055
    372780 5lj5:L (10.0) BS03 ZN ? GO:0000282 ... P25337 27459055
    372781 5lj5:L (10.0) BS04 ZN ? GO:0000282 ... P25337 27459055
    372782 5lj5:L (10.0) BS05 ZN ? GO:0000282 ... P25337 27459055
    372783 5lj5:M (10.0) BS01 rna ? GO:0000387 ... Q12046 27459055
    372784 5lj5:M (10.0) BS02 ZN ? GO:0000387 ... Q12046 27459055
    372785 5lj5:N (10.0) BS01 rna ? GO:0000398 ... P38241 27459055
    372786 5lj5:N (10.0) BS02 ZN ? GO:0000398 ... P38241 27459055
    372787 5lj5:N (10.0) BS03 ZN ? GO:0000398 ... P38241 27459055
    372788 5lj5:O (10.0) BS01 rna ? GO:0000350 ... Q03654 27459055
    372789 5lj5:P (10.0) BS01 rna N/A GO:0000398 ... N/A 27459055
    372790 5lj5:P (10.0) BS02 rna N/A GO:0000398 ... N/A 27459055
    372791 5lj5:P (10.0) BS03 rna N/A GO:0000398 ... N/A 27459055
    372792 5lj5:R (10.0) BS01 rna ? GO:0000398 ... Q03375 27459055
    372793 5lj5:R (10.0) BS02 rna ? GO:0000398 ... Q03375 27459055
    372794 5lj5:S (10.0) BS01 rna ? GO:0000245 ... Q12309 27459055
    372795 5lj5:W (10.0) BS01 rna ? GO:0000398 ... Q08963 27459055
    372796 5lj5:Y (10.0) BS01 rna ? GO:0000398 ... P40567 27459055
    372797 5lj5:b (10.0) BS01 rna ? GO:0000243 ... P40018 27459055
    372798 5lj5:d (10.0) BS01 rna ? GO:0000243 ... P43321 27459055
    372799 5lj5:f (10.0) BS01 rna ? GO:0000243 ... P54999 27459055
    372800 5lj5:g (10.0) BS01 rna ? GO:0000243 ... P40204 27459055

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).