SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    373401 5lmu:D (4.0) BS02 ZN ? GO:0003723 ... P80373 27662086
    373402 5lmu:E (4.0) BS01 rna ? GO:0003723 ... Q5SHQ5 27662086
    373403 5lmu:F (4.0) BS01 rna ? GO:0003735 ... Q5SLP8 27662086
    373404 5lmu:G (4.0) BS01 rna ? GO:0000049 ... P17291 27662086
    373405 5lmu:G (4.0) BS02 rna ? GO:0000049 ... P17291 27662086
    373406 5lmu:H (4.0) BS01 rna ? GO:0003735 ... P0DOY9 27662086
    373407 5lmu:I (4.0) BS01 rna ? GO:0000049 ... P80374 27662086
    373408 5lmu:I (4.0) BS02 rna ? GO:0000049 ... P80374 27662086
    373409 5lmu:J (4.0) BS01 rna ? GO:0000049 ... Q5SHN7 27662086
    373410 5lmu:K (4.0) BS01 rna ? GO:0003735 ... P80376 27662086
    373411 5lmu:K (4.0) BS02 rna ? GO:0003735 ... P80376 27662086
    373412 5lmu:L (4.0) BS01 rna ? GO:0000049 ... Q5SHN3 27662086
    373413 5lmu:M (4.0) BS01 rna ? GO:0000049 ... P80377 27662086
    373414 5lmu:N (4.0) BS01 rna ? GO:0003735 ... P0DOY6 27662086
    373415 5lmu:N (4.0) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    373416 5lmu:O (4.0) BS01 rna ? GO:0003735 ... Q5SJ76 27662086
    373417 5lmu:P (4.0) BS01 rna ? GO:0003735 ... Q5SJH3 27662086
    373418 5lmu:Q (4.0) BS01 rna ? GO:0003735 ... P0DOY7 27662086
    373419 5lmu:R (4.0) BS01 rna ? GO:0003735 ... Q5SLQ0 27662086
    373420 5lmu:S (4.0) BS01 rna ? GO:0000028 ... Q5SHP2 27662086
    373421 5lmu:T (4.0) BS01 rna ? GO:0003723 ... P80380 27662086
    373422 5lmu:X (4.0) BS01 rna ? GO:0003743 ... Q5SKU2 27662086
    373423 5lmu:X (4.0) BS02 rna ? GO:0003743 ... Q5SKU2 27662086
    373424 5lmv:B (4.9) BS01 rna ? GO:0003735 ... P80371 27662086
    373425 5lmv:C (4.9) BS01 rna ? GO:0003676 ... P80372 27662086
    373426 5lmv:D (4.9) BS01 rna ? GO:0003723 ... P80373 27662086
    373427 5lmv:D (4.9) BS02 ZN ? GO:0003723 ... P80373 27662086
    373428 5lmv:E (4.9) BS01 rna ? GO:0003723 ... Q5SHQ5 27662086
    373429 5lmv:F (4.9) BS01 rna ? GO:0003735 ... Q5SLP8 27662086
    373430 5lmv:G (4.9) BS01 rna ? GO:0000049 ... P17291 27662086
    373431 5lmv:G (4.9) BS02 rna ? GO:0000049 ... P17291 27662086
    373432 5lmv:H (4.9) BS01 rna ? GO:0003735 ... P0DOY9 27662086
    373433 5lmv:I (4.9) BS01 rna ? GO:0000049 ... P80374 27662086
    373434 5lmv:J (4.9) BS01 rna ? GO:0000049 ... Q5SHN7 27662086
    373435 5lmv:K (4.9) BS01 rna ? GO:0003735 ... P80376 27662086
    373436 5lmv:K (4.9) BS02 rna ? GO:0003735 ... P80376 27662086
    373437 5lmv:L (4.9) BS01 rna ? GO:0000049 ... Q5SHN3 27662086
    373438 5lmv:M (4.9) BS01 rna ? GO:0000049 ... P80377 27662086
    373439 5lmv:M (4.9) BS02 rna ? GO:0000049 ... P80377 27662086
    373440 5lmv:N (4.9) BS01 rna ? GO:0003735 ... P0DOY6 27662086
    373441 5lmv:N (4.9) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    373442 5lmv:O (4.9) BS01 rna ? GO:0003735 ... Q5SJ76 27662086
    373443 5lmv:P (4.9) BS01 rna ? GO:0003735 ... Q5SJH3 27662086
    373444 5lmv:Q (4.9) BS01 rna ? GO:0003735 ... P0DOY7 27662086
    373445 5lmv:R (4.9) BS01 rna ? GO:0003735 ... Q5SLQ0 27662086
    373446 5lmv:S (4.9) BS01 rna ? GO:0000028 ... Q5SHP2 27662086
    373447 5lmv:T (4.9) BS01 rna ? GO:0003723 ... P80380 27662086
    373448 5lmv:W (4.9) BS01 rna ? GO:0003723 ... Q5SHR1 27662086
    373449 5lmv:W (4.9) BS02 MG ? GO:0003723 ... Q5SHR1 27662086
    373450 5lmv:X (4.9) BS01 rna ? GO:0003743 ... Q5SKU2 27662086
    373451 5lmv:X (4.9) BS02 rna ? GO:0003743 ... Q5SKU2 27662086
    373452 5lmv:a (4.9) BS01 rna ? GO:0003743 ... P48515 27662086
    373453 5lmv:a (4.9) BS02 rna ? GO:0003743 ... P48515 27662086
    373454 5lmv:a (4.9) BS03 FME ? GO:0003743 ... P48515 27662086
    373455 5lmx:A (4.9) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 28262097
    373456 5lmx:A (4.9) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 28262097
    373457 5lmx:B (4.9) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 28262097
    373458 5lmx:G (4.9) BS01 peptide ? GO:0000428 ... P46669 28262097
    373459 5lmx:I (4.9) BS01 ZN ? GO:0000122 ... P32529 28262097
    373460 5lmx:J (4.9) BS01 ZN ? GO:0000428 ... P22139 28262097
    373461 5lmx:L (4.9) BS01 ZN ? GO:0000428 ... P40422 28262097
    373462 5lmz:A (2.55) BS01 1DA 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 24449539
    373463 5lmz:B (2.55) BS01 1DA 2.5.1.63
    2.5.1.94
    3.13.2.3
    GO:0016740 ... W0W999 24449539
    373464 5ln2:A (1.58) BS01 6ZT 2.3.2.27 GO:0005634 ... Q00987 27542305 MOAD: ic50=0.13nM
    BindingDB: IC50=0.5nM
    373465 5ln3:R (6.8) BS01 peptide ? GO:0000502 ... Q15008 28292943
    373466 5ln4:C (2.36) BS01 CHT ? N/A P31522 27507539
    373467 5ln8:A (1.65) BS01 GAL ? N/A P33406 27507539 MOAD: Kd=44.3mM
    373468 5lne:A (2.2) BS01 GAL ? GO:0007155 ... A0A0H2V7F6 27667696
    373469 5lne:B (2.2) BS01 GAL ? GO:0007155 ... A0A0H2V7F6 27667696
    373470 5lnf:A (-1.00) BS01 FAR ? GO:0005777 ... P40855 28281558
    373471 5lni:A (1.133) BS01 FMN ? GO:0000166 ... A0A1X0ZT96 N/A
    373472 5lni:A (1.133) BS02 07L ? GO:0000166 ... A0A1X0ZT96 N/A
    373473 5lnj:A (1.16) BS01 FNR ? GO:0000166 ... A0A1X0ZT96 N/A
    373474 5lnj:A (1.16) BS02 07L ? GO:0000166 ... A0A1X0ZT96 N/A
    373475 5lnk:1 (3.9) BS01 SF4 7.1.1.2 GO:0005739 ... W5PUX0 27595392
    373476 5lnk:1 (3.9) BS02 FMN 7.1.1.2 GO:0005739 ... W5PUX0 27595392
    373477 5lnk:1 (3.9) BS03 FES 7.1.1.2 GO:0005739 ... W5PUX0 27595392
    373478 5lnk:2 (3.9) BS01 FES 7.1.1.2 N/A W5NRY1 27595392
    373479 5lnk:3 (3.9) BS01 SF4 N/A N/A N/A 27595392
    373480 5lnk:3 (3.9) BS02 SF4 N/A N/A N/A 27595392
    373481 5lnk:3 (3.9) BS03 FES N/A N/A N/A 27595392
    373482 5lnk:4 (3.9) BS01 SF4 ? GO:0005739 ... W5PJ73 27595392
    373483 5lnk:6 (3.9) BS01 SF4 7.1.1.2 N/A P42026 27595392
    373484 5lnk:9 (3.9) BS01 SF4 7.1.1.2 N/A P42028 27595392
    373485 5lnk:9 (3.9) BS02 SF4 7.1.1.2 N/A P42028 27595392
    373486 5lnk:J (3.9) BS01 CDL 7.1.1.2 GO:0005739 ... O78757 27595392
    373487 5lnk:L (3.9) BS01 CDL 7.1.1.2 GO:0003954 ... O78756 27595392
    373488 5lnk:M (3.9) BS01 CDL 7.1.1.2 GO:0003954 ... O78755 27595392
    373489 5lnk:W (3.9) BS01 CDL N/A N/A N/A 27595392
    373490 5lnk:X (3.9) BS01 PNS ? N/A W5NQT7 27595392
    373491 5lnk:b (3.9) BS01 ZN ? N/A P23934 27595392
    373492 5lnk:d (3.9) BS01 NDP N/A N/A N/A 27595392
    373493 5lnk:g (3.9) BS01 ZMP ? GO:0005739 ... W5QC06 27595392
    373494 5lnk:h (3.9) BS01 CDL ? GO:0005739 ... W5P0I2 27595392
    373495 5lnk:i (3.9) BS01 CDL N/A N/A N/A 27595392
    373496 5lnk:j (3.9) BS01 ZMP ? N/A W5NQT7 27595392
    373497 5lnk:t (3.9) BS01 PNS N/A N/A N/A 27595392
    373498 5lnk:w (3.9) BS01 CDL N/A N/A N/A 27595392
    373499 5lnk:z (3.9) BS01 CDL ? GO:0005739 ... Q02377 27595392
    373500 5lnq:A (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    373501 5lnq:B (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    373502 5lnq:D (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    373503 5lnr:A (1.61) BS01 PLP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373504 5lnr:B (1.61) BS01 PLP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373505 5lnr:C (1.61) BS01 PLP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373506 5lnr:D (1.61) BS01 PLP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373507 5lns:A (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373508 5lns:B (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373509 5lns:C (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373510 5lns:D (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373511 5lnt:A (2.32) BS01 KPR 4.3.3.6 GO:0005737 ... O80448 28092359
    373512 5lnt:B (2.32) BS01 KPR 4.3.3.6 GO:0005737 ... O80448 28092359
    373513 5lnt:C (2.32) BS01 KPR 4.3.3.6 GO:0005737 ... O80448 28092359
    373514 5lnt:D (2.32) BS01 KPR 4.3.3.6 GO:0005737 ... O80448 28092359
    373515 5lnu:A (1.73) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373516 5lnu:A (1.73) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373517 5lnu:B (1.73) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373518 5lnu:B (1.73) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373519 5lnu:C (1.73) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373520 5lnu:C (1.73) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373521 5lnu:D (1.73) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373522 5lnu:D (1.73) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373523 5lnv:A (2.24) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373524 5lnv:A (2.24) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373525 5lnv:B (2.24) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373526 5lnv:B (2.24) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373527 5lnv:C (2.24) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373528 5lnv:C (2.24) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373529 5lnv:D (2.24) BS01 PO4 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373530 5lnv:D (2.24) BS02 KIK 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373531 5lnw:A (1.9) BS01 K8P 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373532 5lnw:A (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373533 5lnw:A (1.9) BS03 HG3 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373534 5lnw:B (1.9) BS01 K8P 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373535 5lnw:B (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373536 5lnw:B (1.9) BS03 HG3 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373537 5lnw:C (1.9) BS01 K8P 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373538 5lnw:C (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373539 5lnw:C (1.9) BS03 HG3 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373540 5lnw:D (1.9) BS01 K8P 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373541 5lnw:D (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373542 5lnw:D (1.9) BS03 HG3 4.3.3.6 GO:0005515 ... Q8L940 28092359
    373543 5lnx:A (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373544 5lnx:A (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373545 5lnx:B (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373546 5lnx:B (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373547 5lnx:C (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373548 5lnx:C (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373549 5lnx:D (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373550 5lnx:D (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373551 5lnx:E (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373552 5lnx:E (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373553 5lnx:F (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373554 5lnx:F (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373555 5lnx:G (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373556 5lnx:G (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373557 5lnx:H (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373558 5lnx:H (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    373559 5lny:A (1.88) BS01 70K 3.6.4.10 GO:0005524 ... P07900 29701469 MOAD: Kd=42nM
    373560 5lnz:A (1.54) BS01 70Z 3.6.4.10 GO:0005524 ... P07900 29701469
    373561 5lo0:A (2.3) BS01 70N 3.6.4.10 GO:0005524 ... P07900 29701469
    373562 5lo1:A (2.7) BS01 70L 3.6.4.10 GO:0005524 ... P07900 29701469
    373563 5lo5:A (1.44) BS01 70M 3.6.4.10 GO:0005524 ... P07900 29768913
    373564 5lo6:A (2.4) BS01 70O 3.6.4.10 GO:0005524 ... P07900 29768913
    373565 5lo8:A (2.5) BS01 CA ? GO:0016020 ... P47709 28634303
    373566 5lo8:A (2.5) BS02 CA ? GO:0016020 ... P47709 28634303
    373567 5lo8:A (2.5) BS03 PIO ? GO:0016020 ... P47709 28634303
    373568 5lo8:B (2.5) BS01 PIO ? GO:0016020 ... P47709 28634303
    373569 5lo8:B (2.5) BS02 CA ? GO:0016020 ... P47709 28634303
    373570 5lo8:B (2.5) BS03 CA ? GO:0016020 ... P47709 28634303
    373571 5lo8:B (2.5) BS04 PIO ? GO:0016020 ... P47709 28634303
    373572 5lo9:A (2.75) BS01 HEC ? GO:0009055 ... W0DW89 27694441
    373573 5lo9:A (2.75) BS02 HEC ? GO:0009055 ... W0DW89 27694441
    373574 5lo9:A (2.75) BS03 HEC ? GO:0009055 ... W0DW89 27694441
    373575 5lo9:A (2.75) BS04 HEC ? GO:0009055 ... W0DW89 27694441
    373576 5lo9:A (2.75) BS05 THJ ? GO:0009055 ... W0DW89 27694441
    373577 5lo9:B (2.75) BS01 HEC ? GO:0009055 ... W0DW89 27694441
    373578 5lo9:B (2.75) BS02 HEC ? GO:0009055 ... W0DW89 27694441
    373579 5lo9:B (2.75) BS03 HEC ? GO:0009055 ... W0DW89 27694441
    373580 5lo9:B (2.75) BS04 HEC ? GO:0009055 ... W0DW89 27694441
    373581 5lo9:B (2.75) BS05 THJ ? GO:0009055 ... W0DW89 27694441
    373582 5loa:A (1.84) BS01 NAP 1.4.1.16 GO:0009085 ... P04964 N/A
    373583 5loa:B (1.84) BS01 NAP 1.4.1.16 GO:0009085 ... P04964 N/A
    373584 5lob:A (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    373585 5lob:A (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    373586 5lob:B (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    373587 5lob:B (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    373588 5lob:C (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    373589 5lob:C (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    373590 5loe:A (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    373591 5loe:B (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    373592 5loe:C (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    373593 5loe:D (3.0) BS01 ILE ? GO:0000976 ... P39779 28011634
    373594 5lof:A (2.2) BS01 GLC ? GO:0008643 ... P0AEY0
    Q07820
    27760111
    373595 5lof:A (2.2) BS02 GLC ? GO:0008643 ... P0AEY0
    Q07820
    27760111
    373596 5lof:A (2.2) BS03 70R ? GO:0008643 ... P0AEY0
    Q07820
    27760111 MOAD: Kd=0.19nM
    373597 5log:A (2.01) BS01 SAH ? GO:0008168 ... Q50859 27990630
    373598 5log:A (2.01) BS02 MG ? GO:0008168 ... Q50859 27990630
    373599 5log:A (2.01) BS03 LDP ? GO:0008168 ... Q50859 27990630
    373600 5log:B (2.01) BS01 MG ? GO:0008168 ... Q50859 27990630

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).