SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    374601 5lyb:L9 (3.25) BS01 rna ? GO:0002181 ... P05738 27827794
    374602 5lyb:M0 (3.25) BS01 rna ? GO:0000027 ... P41805 27827794
    374603 5lyb:M0 (3.25) BS02 rna ? GO:0000027 ... P41805 27827794
    374604 5lyb:M0 (3.25) BS03 MG ? GO:0000027 ... P41805 27827794
    374605 5lyb:M0 (3.25) BS04 MG ? GO:0000027 ... P41805 27827794
    374606 5lyb:M0 (3.25) BS05 MG ? GO:0000027 ... P41805 27827794
    374607 5lyb:M0 (3.25) BS06 MG ? GO:0000027 ... P41805 27827794
    374608 5lyb:M0 (3.25) BS07 OHX ? GO:0000027 ... P41805 27827794
    374609 5lyb:M0 (3.25) BS08 OHX ? GO:0000027 ... P41805 27827794
    374610 5lyb:M0 (3.25) BS09 OHX ? GO:0000027 ... P41805 27827794
    374611 5lyb:M1 (3.25) BS01 rna ? GO:0000027 ... Q3E757 27827794
    374612 5lyb:M1 (3.25) BS02 rna ? GO:0000027 ... Q3E757 27827794
    374613 5lyb:M3 (3.25) BS01 rna ? GO:0002181 ... Q12690 27827794
    374614 5lyb:M3 (3.25) BS02 rna ? GO:0002181 ... Q12690 27827794
    374615 5lyb:M3 (3.25) BS03 MG ? GO:0002181 ... Q12690 27827794
    374616 5lyb:M3 (3.25) BS04 MG ? GO:0002181 ... Q12690 27827794
    374617 5lyb:M4 (3.25) BS01 rna ? GO:0000027 ... P36105 27827794
    374618 5lyb:M5 (3.25) BS01 rna ? GO:0002181 ... P05748 27827794
    374619 5lyb:M5 (3.25) BS02 rna ? GO:0002181 ... P05748 27827794
    374620 5lyb:M5 (3.25) BS03 MG ? GO:0002181 ... P05748 27827794
    374621 5lyb:M5 (3.25) BS04 MG ? GO:0002181 ... P05748 27827794
    374622 5lyb:M5 (3.25) BS05 MG ? GO:0002181 ... P05748 27827794
    374623 5lyb:M5 (3.25) BS06 MG ? GO:0002181 ... P05748 27827794
    374624 5lyb:M5 (3.25) BS07 MG ? GO:0002181 ... P05748 27827794
    374625 5lyb:M5 (3.25) BS08 OHX ? GO:0002181 ... P05748 27827794
    374626 5lyb:M6 (3.25) BS01 rna ? GO:0000470 ... P26784 27827794
    374627 5lyb:M6 (3.25) BS02 MG ? GO:0000470 ... P26784 27827794
    374628 5lyb:M6 (3.25) BS03 MG ? GO:0000470 ... P26784 27827794
    374629 5lyb:M6 (3.25) BS04 MG ? GO:0000470 ... P26784 27827794
    374630 5lyb:M6 (3.25) BS05 MG ? GO:0000470 ... P26784 27827794
    374631 5lyb:M6 (3.25) BS06 MG ? GO:0000470 ... P26784 27827794
    374632 5lyb:M7 (3.25) BS01 rna ? GO:0000448 ... P05740 27827794
    374633 5lyb:M7 (3.25) BS02 rna ? GO:0000448 ... P05740 27827794
    374634 5lyb:M7 (3.25) BS03 MG ? GO:0000448 ... P05740 27827794
    374635 5lyb:M7 (3.25) BS04 MG ? GO:0000448 ... P05740 27827794
    374636 5lyb:M7 (3.25) BS05 MG ? GO:0000448 ... P05740 27827794
    374637 5lyb:M7 (3.25) BS06 OHX ? GO:0000448 ... P05740 27827794
    374638 5lyb:M8 (3.25) BS01 rna ? GO:0002181 ... P0CX49 27827794
    374639 5lyb:M8 (3.25) BS02 MG ? GO:0002181 ... P0CX49 27827794
    374640 5lyb:M8 (3.25) BS03 MG ? GO:0002181 ... P0CX49 27827794
    374641 5lyb:M8 (3.25) BS04 MG ? GO:0002181 ... P0CX49 27827794
    374642 5lyb:M9 (3.25) BS01 rna ? GO:0002181 ... P0CX82 27827794
    374643 5lyb:M9 (3.25) BS02 rna ? GO:0002181 ... P0CX82 27827794
    374644 5lyb:M9 (3.25) BS03 MG ? GO:0002181 ... P0CX82 27827794
    374645 5lyb:M9 (3.25) BS04 MG ? GO:0002181 ... P0CX82 27827794
    374646 5lyb:M9 (3.25) BS05 OHX ? GO:0002181 ... P0CX82 27827794
    374647 5lyb:N0 (3.25) BS01 rna ? GO:0002181 ... P0CX23 27827794
    374648 5lyb:N0 (3.25) BS02 rna ? GO:0002181 ... P0CX23 27827794
    374649 5lyb:N0 (3.25) BS03 MG ? GO:0002181 ... P0CX23 27827794
    374650 5lyb:N0 (3.25) BS04 MG ? GO:0002181 ... P0CX23 27827794
    374651 5lyb:N1 (3.25) BS01 rna ? GO:0002181 ... Q02753 27827794
    374652 5lyb:N1 (3.25) BS02 rna ? GO:0002181 ... Q02753 27827794
    374653 5lyb:N1 (3.25) BS03 MG ? GO:0002181 ... Q02753 27827794
    374654 5lyb:N1 (3.25) BS04 OHX ? GO:0002181 ... Q02753 27827794
    374655 5lyb:N2 (3.25) BS01 rna ? GO:0003735 ... P05749 27827794
    374656 5lyb:N3 (3.25) BS01 rna ? GO:0002181 ... P0CX41 27827794
    374657 5lyb:N3 (3.25) BS02 rna ? GO:0002181 ... P0CX41 27827794
    374658 5lyb:N3 (3.25) BS03 MG ? GO:0002181 ... P0CX41 27827794
    374659 5lyb:N4 (3.25) BS01 rna ? GO:0003735 ... P04449 27827794
    374660 5lyb:N4 (3.25) BS02 rna ? GO:0003735 ... P04449 27827794
    374661 5lyb:N5 (3.25) BS01 rna ? GO:0003735 ... P04456 27827794
    374662 5lyb:N5 (3.25) BS02 rna ? GO:0003735 ... P04456 27827794
    374663 5lyb:N5 (3.25) BS03 MG ? GO:0003735 ... P04456 27827794
    374664 5lyb:N6 (3.25) BS01 rna ? GO:0002181 ... P05743 27827794
    374665 5lyb:N6 (3.25) BS02 rna ? GO:0002181 ... P05743 27827794
    374666 5lyb:N6 (3.25) BS03 MG ? GO:0002181 ... P05743 27827794
    374667 5lyb:N7 (3.25) BS01 rna ? GO:0002181 ... P0C2H6 27827794
    374668 5lyb:N8 (3.25) BS01 rna ? GO:0002181 ... P02406 27827794
    374669 5lyb:N8 (3.25) BS02 MG ? GO:0002181 ... P02406 27827794
    374670 5lyb:N8 (3.25) BS03 MG ? GO:0002181 ... P02406 27827794
    374671 5lyb:N8 (3.25) BS04 MG ? GO:0002181 ... P02406 27827794
    374672 5lyb:N8 (3.25) BS05 MG ? GO:0002181 ... P02406 27827794
    374673 5lyb:N9 (3.25) BS01 rna ? GO:0002181 ... P05747 27827794
    374674 5lyb:N9 (3.25) BS02 OHX ? GO:0002181 ... P05747 27827794
    374675 5lyb:O0 (3.25) BS01 rna ? GO:0002181 ... P14120 27827794
    374676 5lyb:O1 (3.25) BS01 rna ? GO:0002181 ... P0C2H8 27827794
    374677 5lyb:O1 (3.25) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    374678 5lyb:O1 (3.25) BS03 MG ? GO:0002181 ... P0C2H8 27827794
    374679 5lyb:O1 (3.25) BS04 MG ? GO:0002181 ... P0C2H8 27827794
    374680 5lyb:O2 (3.25) BS01 rna ? GO:0002181 ... P38061 27827794
    374681 5lyb:O2 (3.25) BS02 MG ? GO:0002181 ... P38061 27827794
    374682 5lyb:O2 (3.25) BS03 MG ? GO:0002181 ... P38061 27827794
    374683 5lyb:O3 (3.25) BS01 rna ? GO:0000027 ... P05744 27827794
    374684 5lyb:O3 (3.25) BS02 MG ? GO:0000027 ... P05744 27827794
    374685 5lyb:O3 (3.25) BS03 MG ? GO:0000027 ... P05744 27827794
    374686 5lyb:O3 (3.25) BS04 OHX ? GO:0000027 ... P05744 27827794
    374687 5lyb:O4 (3.25) BS01 rna ? GO:0002181 ... P87262 27827794
    374688 5lyb:O4 (3.25) BS02 MG ? GO:0002181 ... P87262 27827794
    374689 5lyb:O5 (3.25) BS01 rna ? GO:0000463 ... P0CX84 27827794
    374690 5lyb:O5 (3.25) BS02 rna ? GO:0000463 ... P0CX84 27827794
    374691 5lyb:O5 (3.25) BS03 MG ? GO:0000463 ... P0CX84 27827794
    374692 5lyb:O6 (3.25) BS01 rna ? GO:0002181 ... P05745 27827794
    374693 5lyb:O7 (3.25) BS01 rna ? GO:0000448 ... P49166 27827794
    374694 5lyb:O7 (3.25) BS02 rna ? GO:0000448 ... P49166 27827794
    374695 5lyb:O7 (3.25) BS03 MG ? GO:0000448 ... P49166 27827794
    374696 5lyb:O7 (3.25) BS04 ZN ? GO:0000448 ... P49166 27827794
    374697 5lyb:O7 (3.25) BS05 MG ? GO:0000448 ... P49166 27827794
    374698 5lyb:O7 (3.25) BS06 MG ? GO:0000448 ... P49166 27827794
    374699 5lyb:O7 (3.25) BS07 OHX ? GO:0000448 ... P49166 27827794
    374700 5lyb:O7 (3.25) BS08 OHX ? GO:0000448 ... P49166 27827794
    374701 5lyb:O8 (3.25) BS01 rna ? GO:0002181 ... P49167 27827794
    374702 5lyb:O9 (3.25) BS01 rna ? GO:0002181 ... P04650 27827794
    374703 5lyb:O9 (3.25) BS02 rna ? GO:0002181 ... P04650 27827794
    374704 5lyb:O9 (3.25) BS03 OHX ? GO:0002181 ... P04650 27827794
    374705 5lyb:O9 (3.25) BS04 MG ? GO:0002181 ... P04650 27827794
    374706 5lyb:Q0 (3.25) BS01 rna ? GO:0003735 ... P0CH08 27827794
    374707 5lyb:Q0 (3.25) BS02 MG ? GO:0003735 ... P0CH08 27827794
    374708 5lyb:Q0 (3.25) BS03 MG ? GO:0003735 ... P0CH08 27827794
    374709 5lyb:Q0 (3.25) BS04 ZN ? GO:0003735 ... P0CH08 27827794
    374710 5lyb:Q2 (3.25) BS01 rna ? GO:0002181 ... P0CX27 27827794
    374711 5lyb:Q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    374712 5lyb:Q2 (3.25) BS03 OHX ? GO:0002181 ... P0CX27 27827794
    374713 5lyb:Q3 (3.25) BS01 rna ? GO:0002181 ... P0CX25 27827794
    374714 5lyb:Q3 (3.25) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    374715 5lyb:S0 (3.25) BS01 rna ? GO:0003735 ... B3LI22 27827794
    374716 5lyb:S1 (3.25) BS01 rna ? GO:0003735 ... B3RHV0 27827794
    374717 5lyb:S2 (3.25) BS01 rna ? GO:0003723 ... P25443 27827794
    374718 5lyb:S3 (3.25) BS01 rna ? GO:0000054 ... P05750 27827794
    374719 5lyb:S4 (3.25) BS01 rna ? GO:0002181 ... P0CX35 27827794
    374720 5lyb:S5 (3.25) BS01 rna ? GO:0000028 ... P26783 27827794
    374721 5lyb:S6 (3.25) BS01 rna ? GO:0000462 ... P0CX37 27827794
    374722 5lyb:S7 (3.25) BS01 rna ? GO:0002181 ... P26786 27827794
    374723 5lyb:S8 (3.25) BS01 rna ? GO:0000462 ... P0CX39 27827794
    374724 5lyb:S8 (3.25) BS02 rna ? GO:0000462 ... P0CX39 27827794
    374725 5lyb:S8 (3.25) BS03 MG ? GO:0000462 ... P0CX39 27827794
    374726 5lyb:S8 (3.25) BS04 OHX ? GO:0000462 ... P0CX39 27827794
    374727 5lyb:S9 (3.25) BS01 rna ? GO:0000462 ... O13516 27827794
    374728 5lyb:S9 (3.25) BS02 OHX ? GO:0000462 ... O13516 27827794
    374729 5lyb:SM (3.25) BS01 rna ? N/A P39015 27827794
    374730 5lyb:SM (3.25) BS02 rna ? N/A P39015 27827794
    374731 5lyb:SR (3.25) BS01 rna ? GO:0001965 ... P38011 27827794
    374732 5lyb:SR (3.25) BS02 OHX ? GO:0001965 ... P38011 27827794
    374733 5lyb:c0 (3.25) BS01 rna ? N/A Q08745 27827794
    374734 5lyb:c1 (3.25) BS01 rna ? GO:0000028 ... P0CX47 27827794
    374735 5lyb:c2 (3.25) BS01 rna N/A GO:0003735 ... N/A 27827794
    374736 5lyb:c3 (3.25) BS01 rna ? GO:0000462 ... P05756 27827794
    374737 5lyb:c3 (3.25) BS02 rna ? GO:0000462 ... P05756 27827794
    374738 5lyb:c3 (3.25) BS03 OHX ? GO:0000462 ... P05756 27827794
    374739 5lyb:c4 (3.25) BS01 rna ? GO:0000028 ... P06367 27827794
    374740 5lyb:c5 (3.25) BS01 rna ? GO:0000028 ... Q01855 27827794
    374741 5lyb:c5 (3.25) BS02 OHX ? GO:0000028 ... Q01855 27827794
    374742 5lyb:c5 (3.25) BS03 OHX ? GO:0000028 ... Q01855 27827794
    374743 5lyb:c6 (3.25) BS01 rna ? GO:0000462 ... P0CX51 27827794
    374744 5lyb:c7 (3.25) BS01 rna ? GO:0000028 ... P02407 27827794
    374745 5lyb:c8 (3.25) BS01 rna ? GO:0000054 ... P0CX55 27827794
    374746 5lyb:c8 (3.25) BS02 MG ? GO:0000054 ... P0CX55 27827794
    374747 5lyb:c9 (3.25) BS01 rna ? GO:0000028 ... P07280 27827794
    374748 5lyb:c9 (3.25) BS02 MG ? GO:0000028 ... P07280 27827794
    374749 5lyb:d0 (3.25) BS01 rna ? GO:0000462 ... P38701 27827794
    374750 5lyb:d2 (3.25) BS01 rna ? GO:0002181 ... P0C0W1 27827794
    374751 5lyb:d3 (3.25) BS01 rna ? GO:0000462 ... P0CY39 27827794
    374752 5lyb:d4 (3.25) BS01 rna ? GO:0000462 ... P0CX31 27827794
    374753 5lyb:d5 (3.25) BS01 rna ? N/A Q3E792 27827794
    374754 5lyb:d6 (3.25) BS01 rna ? GO:0003735 ... P39939 27827794
    374755 5lyb:d6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27827794
    374756 5lyb:d7 (3.25) BS01 rna ? GO:0000028 ... P35997 27827794
    374757 5lyb:d8 (3.25) BS01 rna ? GO:0000028 ... Q3E7X9 27827794
    374758 5lyb:d9 (3.25) BS01 rna ? GO:0002181 ... P41057 27827794
    374759 5lyb:d9 (3.25) BS02 MG ? GO:0002181 ... P41057 27827794
    374760 5lyb:d9 (3.25) BS03 ZN ? GO:0002181 ... P41057 27827794
    374761 5lyb:d9 (3.25) BS04 OHX ? GO:0002181 ... P41057 27827794
    374762 5lyb:e0 (3.25) BS01 rna ? GO:0002181 ... P0CX33 27827794
    374763 5lyb:e1 (3.25) BS01 rna ? GO:0003735 ... P05759 27827794
    374764 5lyb:l2 (3.25) BS01 rna ? GO:0002181 ... P0CX45 27827794
    374765 5lyb:l2 (3.25) BS02 rna ? GO:0002181 ... P0CX45 27827794
    374766 5lyb:l2 (3.25) BS03 MG ? GO:0002181 ... P0CX45 27827794
    374767 5lyb:l2 (3.25) BS04 MG ? GO:0002181 ... P0CX45 27827794
    374768 5lyb:l2 (3.25) BS05 MG ? GO:0002181 ... P0CX45 27827794
    374769 5lyb:l3 (3.25) BS01 rna ? GO:0000027 ... P14126 27827794
    374770 5lyb:l3 (3.25) BS02 MG ? GO:0000027 ... P14126 27827794
    374771 5lyb:l3 (3.25) BS03 MG ? GO:0000027 ... P14126 27827794
    374772 5lyb:l3 (3.25) BS04 MG ? GO:0000027 ... P14126 27827794
    374773 5lyb:l3 (3.25) BS05 MG ? GO:0000027 ... P14126 27827794
    374774 5lyb:l3 (3.25) BS06 MG ? GO:0000027 ... P14126 27827794
    374775 5lyb:l3 (3.25) BS07 MG ? GO:0000027 ... P14126 27827794
    374776 5lyb:l3 (3.25) BS08 MG ? GO:0000027 ... P14126 27827794
    374777 5lyb:l3 (3.25) BS09 MG ? GO:0000027 ... P14126 27827794
    374778 5lyb:l3 (3.25) BS10 OHX ? GO:0000027 ... P14126 27827794
    374779 5lyb:l3 (3.25) BS11 OHX ? GO:0000027 ... P14126 27827794
    374780 5lyb:l4 (3.25) BS01 rna ? GO:0002181 ... P10664 27827794
    374781 5lyb:l4 (3.25) BS02 rna ? GO:0002181 ... P10664 27827794
    374782 5lyb:l4 (3.25) BS03 MG ? GO:0002181 ... P10664 27827794
    374783 5lyb:l4 (3.25) BS04 OHX ? GO:0002181 ... P10664 27827794
    374784 5lyb:l4 (3.25) BS05 OHX ? GO:0002181 ... P10664 27827794
    374785 5lyb:l5 (3.25) BS01 rna ? GO:0000027 ... P26321 27827794
    374786 5lyb:l5 (3.25) BS02 rna ? GO:0000027 ... P26321 27827794
    374787 5lyb:l5 (3.25) BS03 MG ? GO:0000027 ... P26321 27827794
    374788 5lyb:l5 (3.25) BS04 MG ? GO:0000027 ... P26321 27827794
    374789 5lyb:l5 (3.25) BS05 MG ? GO:0000027 ... P26321 27827794
    374790 5lyb:l5 (3.25) BS06 MG ? GO:0000027 ... P26321 27827794
    374791 5lyb:l5 (3.25) BS07 MG ? GO:0000027 ... P26321 27827794
    374792 5lyb:l5 (3.25) BS08 MG ? GO:0000027 ... P26321 27827794
    374793 5lyb:l5 (3.25) BS09 OHX ? GO:0000027 ... P26321 27827794
    374794 5lyb:l5 (3.25) BS10 OHX ? GO:0000027 ... P26321 27827794
    374795 5lyb:l6 (3.25) BS01 rna ? GO:0000027 ... Q02326 27827794
    374796 5lyb:l7 (3.25) BS01 rna ? GO:0000463 ... P05737 27827794
    374797 5lyb:l7 (3.25) BS02 rna ? GO:0000463 ... P05737 27827794
    374798 5lyb:l7 (3.25) BS03 MG ? GO:0000463 ... P05737 27827794
    374799 5lyb:l7 (3.25) BS04 OHX ? GO:0000463 ... P05737 27827794
    374800 5lyb:l7 (3.25) BS05 MG ? GO:0000463 ... P05737 27827794

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).