SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    374801 5lyb:l7 (3.25) BS06 MG ? GO:0000463 ... P05737 27827794
    374802 5lyb:l8 (3.25) BS01 rna ? GO:0003723 ... P17076 27827794
    374803 5lyb:l8 (3.25) BS02 rna ? GO:0003723 ... P17076 27827794
    374804 5lyb:l9 (3.25) BS01 rna ? GO:0002181 ... P05738 27827794
    374805 5lyb:l9 (3.25) BS02 MG ? GO:0002181 ... P05738 27827794
    374806 5lyb:m0 (3.25) BS01 rna ? GO:0000027 ... P41805 27827794
    374807 5lyb:m0 (3.25) BS02 rna ? GO:0000027 ... P41805 27827794
    374808 5lyb:m0 (3.25) BS03 OHX ? GO:0000027 ... P41805 27827794
    374809 5lyb:m0 (3.25) BS04 OHX ? GO:0000027 ... P41805 27827794
    374810 5lyb:m0 (3.25) BS05 OHX ? GO:0000027 ... P41805 27827794
    374811 5lyb:m0 (3.25) BS06 OHX ? GO:0000027 ... P41805 27827794
    374812 5lyb:m0 (3.25) BS07 OHX ? GO:0000027 ... P41805 27827794
    374813 5lyb:m1 (3.25) BS01 rna ? GO:0000027 ... Q3E757 27827794
    374814 5lyb:m1 (3.25) BS02 rna ? GO:0000027 ... Q3E757 27827794
    374815 5lyb:m1 (3.25) BS03 OHX ? GO:0000027 ... Q3E757 27827794
    374816 5lyb:m2 (3.25) BS01 rna N/A N/A N/A 27827794
    374817 5lyb:m3 (3.25) BS01 rna ? GO:0002181 ... Q12690 27827794
    374818 5lyb:m3 (3.25) BS02 rna ? GO:0002181 ... Q12690 27827794
    374819 5lyb:m3 (3.25) BS03 MG ? GO:0002181 ... Q12690 27827794
    374820 5lyb:m4 (3.25) BS01 rna ? GO:0000027 ... P36105 27827794
    374821 5lyb:m4 (3.25) BS02 MG ? GO:0000027 ... P36105 27827794
    374822 5lyb:m5 (3.25) BS01 rna ? GO:0002181 ... P05748 27827794
    374823 5lyb:m5 (3.25) BS02 rna ? GO:0002181 ... P05748 27827794
    374824 5lyb:m5 (3.25) BS03 MG ? GO:0002181 ... P05748 27827794
    374825 5lyb:m5 (3.25) BS04 OHX ? GO:0002181 ... P05748 27827794
    374826 5lyb:m6 (3.25) BS01 rna ? GO:0000470 ... P26784 27827794
    374827 5lyb:m6 (3.25) BS02 MG ? GO:0000470 ... P26784 27827794
    374828 5lyb:m6 (3.25) BS03 MG ? GO:0000470 ... P26784 27827794
    374829 5lyb:m6 (3.25) BS04 MG ? GO:0000470 ... P26784 27827794
    374830 5lyb:m6 (3.25) BS05 MG ? GO:0000470 ... P26784 27827794
    374831 5lyb:m6 (3.25) BS06 MG ? GO:0000470 ... P26784 27827794
    374832 5lyb:m6 (3.25) BS07 MG ? GO:0000470 ... P26784 27827794
    374833 5lyb:m6 (3.25) BS08 MG ? GO:0000470 ... P26784 27827794
    374834 5lyb:m6 (3.25) BS09 MG ? GO:0000470 ... P26784 27827794
    374835 5lyb:m7 (3.25) BS01 rna ? GO:0000448 ... P05740 27827794
    374836 5lyb:m7 (3.25) BS02 rna ? GO:0000448 ... P05740 27827794
    374837 5lyb:m7 (3.25) BS03 MG ? GO:0000448 ... P05740 27827794
    374838 5lyb:m7 (3.25) BS04 MG ? GO:0000448 ... P05740 27827794
    374839 5lyb:m7 (3.25) BS05 MG ? GO:0000448 ... P05740 27827794
    374840 5lyb:m7 (3.25) BS06 OHX ? GO:0000448 ... P05740 27827794
    374841 5lyb:m8 (3.25) BS01 rna ? GO:0002181 ... P0CX49 27827794
    374842 5lyb:m8 (3.25) BS02 MG ? GO:0002181 ... P0CX49 27827794
    374843 5lyb:m8 (3.25) BS03 MG ? GO:0002181 ... P0CX49 27827794
    374844 5lyb:m9 (3.25) BS01 rna ? GO:0002181 ... P0CX82 27827794
    374845 5lyb:m9 (3.25) BS02 rna ? GO:0002181 ... P0CX82 27827794
    374846 5lyb:m9 (3.25) BS03 MG ? GO:0002181 ... P0CX82 27827794
    374847 5lyb:m9 (3.25) BS04 MG ? GO:0002181 ... P0CX82 27827794
    374848 5lyb:n0 (3.25) BS01 rna ? GO:0002181 ... P0CX23 27827794
    374849 5lyb:n0 (3.25) BS02 rna ? GO:0002181 ... P0CX23 27827794
    374850 5lyb:n0 (3.25) BS03 MG ? GO:0002181 ... P0CX23 27827794
    374851 5lyb:n1 (3.25) BS01 rna ? GO:0002181 ... Q02753 27827794
    374852 5lyb:n1 (3.25) BS02 rna ? GO:0002181 ... Q02753 27827794
    374853 5lyb:n1 (3.25) BS03 MG ? GO:0002181 ... Q02753 27827794
    374854 5lyb:n1 (3.25) BS04 MG ? GO:0002181 ... Q02753 27827794
    374855 5lyb:n1 (3.25) BS05 MG ? GO:0002181 ... Q02753 27827794
    374856 5lyb:n1 (3.25) BS06 MG ? GO:0002181 ... Q02753 27827794
    374857 5lyb:n1 (3.25) BS07 OHX ? GO:0002181 ... Q02753 27827794
    374858 5lyb:n2 (3.25) BS01 rna ? GO:0003735 ... P05749 27827794
    374859 5lyb:n3 (3.25) BS01 rna ? GO:0002181 ... P0CX41 27827794
    374860 5lyb:n3 (3.25) BS02 rna ? GO:0002181 ... P0CX41 27827794
    374861 5lyb:n3 (3.25) BS03 MG ? GO:0002181 ... P0CX41 27827794
    374862 5lyb:n4 (3.25) BS01 rna ? GO:0003735 ... P04449 27827794
    374863 5lyb:n4 (3.25) BS02 rna ? GO:0003735 ... P04449 27827794
    374864 5lyb:n4 (3.25) BS03 MG ? GO:0003735 ... P04449 27827794
    374865 5lyb:n5 (3.25) BS01 rna ? GO:0003735 ... P04456 27827794
    374866 5lyb:n5 (3.25) BS02 rna ? GO:0003735 ... P04456 27827794
    374867 5lyb:n6 (3.25) BS01 rna ? GO:0002181 ... P05743 27827794
    374868 5lyb:n6 (3.25) BS02 rna ? GO:0002181 ... P05743 27827794
    374869 5lyb:n7 (3.25) BS01 rna ? GO:0002181 ... P0C2H6 27827794
    374870 5lyb:n8 (3.25) BS01 rna ? GO:0002181 ... P02406 27827794
    374871 5lyb:n8 (3.25) BS02 MG ? GO:0002181 ... P02406 27827794
    374872 5lyb:n8 (3.25) BS03 MG ? GO:0002181 ... P02406 27827794
    374873 5lyb:n8 (3.25) BS04 MG ? GO:0002181 ... P02406 27827794
    374874 5lyb:n9 (3.25) BS01 rna ? GO:0002181 ... P05747 27827794
    374875 5lyb:n9 (3.25) BS02 MG ? GO:0002181 ... P05747 27827794
    374876 5lyb:n9 (3.25) BS03 OHX ? GO:0002181 ... P05747 27827794
    374877 5lyb:o0 (3.25) BS01 rna ? GO:0002181 ... P14120 27827794
    374878 5lyb:o1 (3.25) BS01 rna ? GO:0002181 ... P0C2H8 27827794
    374879 5lyb:o1 (3.25) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    374880 5lyb:o2 (3.25) BS01 rna ? GO:0002181 ... P38061 27827794
    374881 5lyb:o2 (3.25) BS02 MG ? GO:0002181 ... P38061 27827794
    374882 5lyb:o2 (3.25) BS03 MG ? GO:0002181 ... P38061 27827794
    374883 5lyb:o2 (3.25) BS04 MG ? GO:0002181 ... P38061 27827794
    374884 5lyb:o3 (3.25) BS01 rna ? GO:0000027 ... P05744 27827794
    374885 5lyb:o3 (3.25) BS02 MG ? GO:0000027 ... P05744 27827794
    374886 5lyb:o3 (3.25) BS03 MG ? GO:0000027 ... P05744 27827794
    374887 5lyb:o3 (3.25) BS04 MG ? GO:0000027 ... P05744 27827794
    374888 5lyb:o3 (3.25) BS05 MG ? GO:0000027 ... P05744 27827794
    374889 5lyb:o4 (3.25) BS01 rna ? GO:0002181 ... P87262 27827794
    374890 5lyb:o4 (3.25) BS02 MG ? GO:0002181 ... P87262 27827794
    374891 5lyb:o4 (3.25) BS03 MG ? GO:0002181 ... P87262 27827794
    374892 5lyb:o5 (3.25) BS01 rna ? GO:0000463 ... P0CX84 27827794
    374893 5lyb:o5 (3.25) BS02 rna ? GO:0000463 ... P0CX84 27827794
    374894 5lyb:o6 (3.25) BS01 rna ? GO:0002181 ... P05745 27827794
    374895 5lyb:o6 (3.25) BS02 MG ? GO:0002181 ... P05745 27827794
    374896 5lyb:o7 (3.25) BS01 rna ? GO:0000448 ... P49166 27827794
    374897 5lyb:o7 (3.25) BS02 rna ? GO:0000448 ... P49166 27827794
    374898 5lyb:o7 (3.25) BS03 OHX ? GO:0000448 ... P49166 27827794
    374899 5lyb:o7 (3.25) BS04 MG ? GO:0000448 ... P49166 27827794
    374900 5lyb:o7 (3.25) BS05 MG ? GO:0000448 ... P49166 27827794
    374901 5lyb:o7 (3.25) BS06 ZN ? GO:0000448 ... P49166 27827794
    374902 5lyb:o7 (3.25) BS07 OHX ? GO:0000448 ... P49166 27827794
    374903 5lyb:o8 (3.25) BS01 rna ? GO:0002181 ... P49167 27827794
    374904 5lyb:o9 (3.25) BS01 rna ? GO:0002181 ... P04650 27827794
    374905 5lyb:o9 (3.25) BS02 rna ? GO:0002181 ... P04650 27827794
    374906 5lyb:o9 (3.25) BS03 MG ? GO:0002181 ... P04650 27827794
    374907 5lyb:p0 (3.25) BS01 rna ? N/A P05317 27827794
    374908 5lyb:q0 (3.25) BS01 rna ? GO:0003735 ... P0CH08 27827794
    374909 5lyb:q0 (3.25) BS02 MG ? GO:0003735 ... P0CH08 27827794
    374910 5lyb:q0 (3.25) BS03 ZN ? GO:0003735 ... P0CH08 27827794
    374911 5lyb:q2 (3.25) BS01 rna ? GO:0002181 ... P0CX27 27827794
    374912 5lyb:q2 (3.25) BS02 MG ? GO:0002181 ... P0CX27 27827794
    374913 5lyb:q2 (3.25) BS03 ZN ? GO:0002181 ... P0CX27 27827794
    374914 5lyb:q2 (3.25) BS04 OHX ? GO:0002181 ... P0CX27 27827794
    374915 5lyb:q3 (3.25) BS01 rna ? GO:0002181 ... P0CX25 27827794
    374916 5lyb:q3 (3.25) BS02 rna ? GO:0002181 ... P0CX25 27827794
    374917 5lyb:q3 (3.25) BS03 ZN ? GO:0002181 ... P0CX25 27827794
    374918 5lyb:q3 (3.25) BS04 MG ? GO:0002181 ... P0CX25 27827794
    374919 5lyb:s0 (3.25) BS01 rna ? GO:0003735 ... B3LI22 27827794
    374920 5lyb:s1 (3.25) BS01 rna ? GO:0003735 ... B3RHV0 27827794
    374921 5lyb:s1 (3.25) BS02 rna ? GO:0003735 ... B3RHV0 27827794
    374922 5lyb:s1 (3.25) BS03 OHX ? GO:0003735 ... B3RHV0 27827794
    374923 5lyb:s2 (3.25) BS01 rna ? GO:0003723 ... P25443 27827794
    374924 5lyb:s3 (3.25) BS01 rna ? GO:0000054 ... P05750 27827794
    374925 5lyb:s4 (3.25) BS01 rna ? GO:0002181 ... P0CX35 27827794
    374926 5lyb:s4 (3.25) BS02 MG ? GO:0002181 ... P0CX35 27827794
    374927 5lyb:s5 (3.25) BS01 rna ? GO:0000028 ... P26783 27827794
    374928 5lyb:s5 (3.25) BS02 MG ? GO:0000028 ... P26783 27827794
    374929 5lyb:s6 (3.25) BS01 rna ? GO:0000462 ... P0CX37 27827794
    374930 5lyb:s7 (3.25) BS01 rna ? GO:0002181 ... P26786 27827794
    374931 5lyb:s8 (3.25) BS01 rna ? GO:0000462 ... P0CX39 27827794
    374932 5lyb:s8 (3.25) BS02 rna ? GO:0000462 ... P0CX39 27827794
    374933 5lyb:s8 (3.25) BS03 OHX ? GO:0000462 ... P0CX39 27827794
    374934 5lyb:s9 (3.25) BS01 rna ? GO:0000462 ... O13516 27827794
    374935 5lyb:sM (3.25) BS01 rna ? N/A P39015 27827794
    374936 5lyb:sM (3.25) BS02 rna ? N/A P39015 27827794
    374937 5lyb:sR (3.25) BS01 rna ? GO:0001965 ... P38011 27827794
    374938 5lyb:sR (3.25) BS02 OHX ? GO:0001965 ... P38011 27827794
    374939 5lyc:A (1.8) BS01 HEC ? GO:0005515 ... P00044 28407337
    374940 5lyc:A (1.8) BS02 7AZ ? GO:0005515 ... P00044 28407337
    374941 5lyc:B (1.8) BS01 HEC ? GO:0005515 ... P00044 28407337
    374942 5lyc:B (1.8) BS02 7AZ ? GO:0005515 ... P00044 28407337
    374943 5lyd:A (2.02) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374944 5lyd:A (2.02) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374945 5lyd:A (2.02) BS03 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374946 5lyd:A (2.02) BS04 7B0 3.4.17.2 GO:0004181 ... P09955 27749053
    374947 5lyf:A (2.01) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374948 5lyf:A (2.01) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374949 5lyf:A (2.01) BS03 7B6 3.4.17.2 GO:0004181 ... P09955 27749053
    374950 5lyh:A (2.17) BS01 7B8 2.4.2.- GO:0003950 ... Q460N5 27918638 MOAD: ic50=0.49uM
    374951 5lyh:B (2.17) BS01 7B8 2.4.2.- GO:0003950 ... Q460N5 27918638 MOAD: ic50=0.49uM
    374952 5lyi:A (1.64) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374953 5lyi:A (1.64) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374954 5lyi:A (1.64) BS03 T4F 3.4.17.2 GO:0004181 ... P09955 27749053
    374955 5lyj:A (2.397) BS01 GTP 3.6.5.- GO:0000226 ... P81947 N/A
    374956 5lyj:A (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    374957 5lyj:A (2.397) BS03 7BA 3.6.5.- GO:0000226 ... P81947 N/A
    374958 5lyj:B (2.397) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    374959 5lyj:B (2.397) BS02 7BA ? GO:0000226 ... Q6B856 N/A BindingDB: IC50=1200nM, Ki=180nM
    374960 5lyj:C (2.397) BS01 GTP 3.6.5.- GO:0000226 ... P81947 N/A
    374961 5lyj:C (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    374962 5lyj:D (2.397) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    374963 5lyj:D (2.397) BS02 7BA ? GO:0000226 ... Q6B856 N/A BindingDB: IC50=1200nM, Ki=180nM
    374964 5lyj:F (2.397) BS01 ACP N/A GO:0036211 ... N/A N/A
    374965 5lyl:A (1.83) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374966 5lyl:A (1.83) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    374967 5lyl:A (1.83) BS03 T5F 3.4.17.2 GO:0004181 ... P09955 27749053
    374968 5lyn:A (2.0) BS01 peptide ? N/A Q12118 29075633
    374969 5lyn:A (2.0) BS02 ZN ? N/A Q12118 29075633
    374970 5lyn:B (2.0) BS01 peptide ? N/A Q12118 29075633
    374971 5lyn:B (2.0) BS02 ZN ? N/A Q12118 29075633
    374972 5lyq:A (2.17) BS01 peptide ? GO:0003677 ... P19793 28407400
    374973 5lyq:A (2.17) BS02 7BE ? GO:0003677 ... P19793 28407400
    374974 5lyr:A (1.14) BS01 MAN ? GO:0004559 ... D6D1V7 27992199
    374975 5lyr:A (1.14) BS02 MNM ? GO:0004559 ... D6D1V7 27992199
    374976 5lyw:A (1.69) BS01 7BH 3.4.11.18 GO:0006508 ... P50579 27998678 MOAD: ic50=0.7uM
    374977 5lyw:A (1.69) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    374978 5lyw:A (1.69) BS03 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    374979 5lyx:A (1.9) BS01 7BF 3.4.11.18 GO:0006508 ... P50579 27998678 MOAD: ic50=0.038uM
    374980 5lyx:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    374981 5lyx:A (1.9) BS03 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    374982 5lyy:A (2.17) BS01 7BJ 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: ic50=14uM
    BindingDB: IC50=14000nM
    374983 5lz2:A (2.1) BS01 7BX 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: ic50~1mM
    374984 5lz4:A (2.07) BS01 7BW 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: Kd=2uM
    BindingDB: IC50=3000nM
    374985 5lz5:A (2.05) BS01 7K4 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: Kd=0.45uM
    BindingDB: IC50=1600nM
    374986 5lz6:A (2.6) BS01 BGC ? N/A Q9H3P7 28065508
    374987 5lz7:A (2.1) BS01 7BK 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: Kd=0.53uM
    BindingDB: IC50=1000nM
    374988 5lz8:A (2.11) BS01 7BP 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: ic50=0.98uM
    BindingDB: IC50=5100nM
    374989 5lz9:A (2.06) BS01 7BR 3.1.1.47 GO:0003847 ... Q13093 27933945 MOAD: ic50=0.12uM
    BindingDB: IC50=32nM
    374990 5lza:0 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    374991 5lza:1 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    374992 5lza:2 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    374993 5lza:3 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    374994 5lza:4 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    374995 5lza:4 (3.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    374996 5lza:6 (3.6) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    374997 5lza:6 (3.6) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    374998 5lza:C (3.6) BS01 rna ? GO:0000027 ... P60422 27842381
    374999 5lza:C (3.6) BS02 rna ? GO:0000027 ... P60422 27842381
    375000 5lza:D (3.6) BS01 rna ? GO:0000027 ... P60438 27842381

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).