SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    375201 5lzd:6 (3.4) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    375202 5lzd:C (3.4) BS01 rna ? GO:0000027 ... P60422 27842381
    375203 5lzd:C (3.4) BS02 rna ? GO:0000027 ... P60422 27842381
    375204 5lzd:D (3.4) BS01 rna ? GO:0000027 ... P60438 27842381
    375205 5lzd:E (3.4) BS01 rna ? GO:0001070 ... P60723 27842381
    375206 5lzd:F (3.4) BS01 rna ? GO:0000027 ... P62399 27842381
    375207 5lzd:F (3.4) BS02 rna ? GO:0000027 ... P62399 27842381
    375208 5lzd:F (3.4) BS03 rna ? GO:0000027 ... P62399 27842381
    375209 5lzd:G (3.4) BS01 rna ? GO:0000027 ... P0AG55 27842381
    375210 5lzd:H (3.4) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    375211 5lzd:I (3.4) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    375212 5lzd:J (3.4) BS01 rna ? GO:0002181 ... P0AA10 27842381
    375213 5lzd:K (3.4) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    375214 5lzd:K (3.4) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    375215 5lzd:L (3.4) BS01 rna ? GO:0002181 ... P02413 27842381
    375216 5lzd:M (3.4) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    375217 5lzd:M (3.4) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    375218 5lzd:N (3.4) BS01 rna ? GO:0000027 ... P0AG44 27842381
    375219 5lzd:O (3.4) BS01 rna ? GO:0002181 ... P0C018 27842381
    375220 5lzd:O (3.4) BS02 rna ? GO:0002181 ... P0C018 27842381
    375221 5lzd:P (3.4) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    375222 5lzd:P (3.4) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    375223 5lzd:Q (3.4) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    375224 5lzd:R (3.4) BS01 rna ? GO:0002181 ... P0AG48 27842381
    375225 5lzd:S (3.4) BS01 rna ? GO:0002181 ... P61175 27842381
    375226 5lzd:T (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    375227 5lzd:U (3.4) BS01 rna ? GO:0000027 ... P60624 27842381
    375228 5lzd:V (3.4) BS01 rna ? GO:0000027 ... P68919 27842381
    375229 5lzd:W (3.4) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    375230 5lzd:W (3.4) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    375231 5lzd:X (3.4) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    375232 5lzd:Y (3.4) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    375233 5lzd:Z (3.4) BS01 rna ? GO:0000027 ... P0AG51 27842381
    375234 5lzd:Z (3.4) BS02 rna ? GO:0000027 ... P0AG51 27842381
    375235 5lzd:b (3.4) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    375236 5lzd:c (3.4) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    375237 5lzd:c (3.4) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    375238 5lzd:d (3.4) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    375239 5lzd:d (3.4) BS02 rna ? GO:0000028 ... P0A7V8 27842381
    375240 5lzd:e (3.4) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    375241 5lzd:e (3.4) BS02 rna ? GO:0000028 ... P0A7W1 27842381
    375242 5lzd:f (3.4) BS01 rna ? GO:0003735 ... P02358 27842381
    375243 5lzd:g (3.4) BS01 rna ? GO:0003723 ... P02359 27842381
    375244 5lzd:h (3.4) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    375245 5lzd:i (3.4) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    375246 5lzd:i (3.4) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    375247 5lzd:j (3.4) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    375248 5lzd:k (3.4) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    375249 5lzd:l (3.4) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    375250 5lzd:m (3.4) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    375251 5lzd:m (3.4) BS02 rna ? GO:0000049 ... P0A7S9 27842381
    375252 5lzd:n (3.4) BS01 rna ? GO:0000028 ... P0AG59 27842381
    375253 5lzd:o (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    375254 5lzd:o (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    375255 5lzd:p (3.4) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    375256 5lzd:q (3.4) BS01 rna ? GO:0000028 ... P0AG63 27842381
    375257 5lzd:r (3.4) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    375258 5lzd:s (3.4) BS01 rna ? GO:0000028 ... P0A7U3 27842381
    375259 5lzd:t (3.4) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    375260 5lzd:u (3.4) BS01 rna ? GO:0000028 ... P68679 27842381
    375261 5lzd:z (3.4) BS01 rna ? GO:0000049 ... P14081 27842381
    375262 5lzd:z (3.4) BS02 rna ? GO:0000049 ... P14081 27842381
    375263 5lzd:z (3.4) BS03 rna ? GO:0000049 ... P14081 27842381
    375264 5lzd:z (3.4) BS04 rna ? GO:0000049 ... P14081 27842381
    375265 5lzd:z (3.4) BS05 SEC ? GO:0000049 ... P14081 27842381
    375266 5lzd:z (3.4) BS06 GNP ? GO:0000049 ... P14081 27842381
    375267 5lze:0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    375268 5lze:1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    375269 5lze:2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    375270 5lze:3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    375271 5lze:4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    375272 5lze:4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    375273 5lze:6 (3.5) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    375274 5lze:6 (3.5) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    375275 5lze:C (3.5) BS01 rna ? GO:0000027 ... P60422 27842381
    375276 5lze:C (3.5) BS02 rna ? GO:0000027 ... P60422 27842381
    375277 5lze:D (3.5) BS01 rna ? GO:0000027 ... P60438 27842381
    375278 5lze:E (3.5) BS01 rna ? GO:0001070 ... P60723 27842381
    375279 5lze:F (3.5) BS01 rna ? GO:0000027 ... P62399 27842381
    375280 5lze:F (3.5) BS02 rna ? GO:0000027 ... P62399 27842381
    375281 5lze:F (3.5) BS03 rna ? GO:0000027 ... P62399 27842381
    375282 5lze:G (3.5) BS01 rna ? GO:0000027 ... P0AG55 27842381
    375283 5lze:H (3.5) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    375284 5lze:I (3.5) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    375285 5lze:J (3.5) BS01 rna ? GO:0002181 ... P0AA10 27842381
    375286 5lze:K (3.5) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    375287 5lze:K (3.5) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    375288 5lze:L (3.5) BS01 rna ? GO:0002181 ... P02413 27842381
    375289 5lze:M (3.5) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    375290 5lze:M (3.5) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    375291 5lze:M (3.5) BS03 rna ? GO:0000027 ... P0ADY7 27842381
    375292 5lze:N (3.5) BS01 rna ? GO:0000027 ... P0AG44 27842381
    375293 5lze:O (3.5) BS01 rna ? GO:0002181 ... P0C018 27842381
    375294 5lze:O (3.5) BS02 rna ? GO:0002181 ... P0C018 27842381
    375295 5lze:P (3.5) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    375296 5lze:P (3.5) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    375297 5lze:Q (3.5) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    375298 5lze:R (3.5) BS01 rna ? GO:0002181 ... P0AG48 27842381
    375299 5lze:S (3.5) BS01 rna ? GO:0002181 ... P61175 27842381
    375300 5lze:T (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    375301 5lze:U (3.5) BS01 rna ? GO:0000027 ... P60624 27842381
    375302 5lze:V (3.5) BS01 rna ? GO:0000027 ... P68919 27842381
    375303 5lze:W (3.5) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    375304 5lze:W (3.5) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    375305 5lze:X (3.5) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    375306 5lze:Y (3.5) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    375307 5lze:Z (3.5) BS01 rna ? GO:0000027 ... P0AG51 27842381
    375308 5lze:b (3.5) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    375309 5lze:c (3.5) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    375310 5lze:c (3.5) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    375311 5lze:d (3.5) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    375312 5lze:e (3.5) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    375313 5lze:e (3.5) BS02 rna ? GO:0000028 ... P0A7W1 27842381
    375314 5lze:f (3.5) BS01 rna ? GO:0003735 ... P02358 27842381
    375315 5lze:g (3.5) BS01 rna ? GO:0003723 ... P02359 27842381
    375316 5lze:h (3.5) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    375317 5lze:i (3.5) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    375318 5lze:i (3.5) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    375319 5lze:j (3.5) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    375320 5lze:k (3.5) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    375321 5lze:l (3.5) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    375322 5lze:m (3.5) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    375323 5lze:n (3.5) BS01 rna ? GO:0000028 ... P0AG59 27842381
    375324 5lze:o (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    375325 5lze:o (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    375326 5lze:p (3.5) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    375327 5lze:q (3.5) BS01 rna ? GO:0000028 ... P0AG63 27842381
    375328 5lze:r (3.5) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    375329 5lze:s (3.5) BS01 rna ? GO:0003723 ... P0A7U3 27842381
    375330 5lze:t (3.5) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    375331 5lze:u (3.5) BS01 rna ? GO:0000028 ... P68679 27842381
    375332 5lzf:0 (4.6) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    375333 5lzf:1 (4.6) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    375334 5lzf:2 (4.6) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    375335 5lzf:3 (4.6) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    375336 5lzf:4 (4.6) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    375337 5lzf:4 (4.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    375338 5lzf:6 (4.6) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    375339 5lzf:6 (4.6) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    375340 5lzf:C (4.6) BS01 rna ? GO:0000027 ... P60422 27842381
    375341 5lzf:C (4.6) BS02 rna ? GO:0000027 ... P60422 27842381
    375342 5lzf:D (4.6) BS01 rna ? GO:0000027 ... P60438 27842381
    375343 5lzf:E (4.6) BS01 rna ? GO:0001070 ... P60723 27842381
    375344 5lzf:F (4.6) BS01 rna ? GO:0000027 ... P62399 27842381
    375345 5lzf:F (4.6) BS02 rna ? GO:0000027 ... P62399 27842381
    375346 5lzf:G (4.6) BS01 rna ? GO:0000027 ... P0AG55 27842381
    375347 5lzf:H (4.6) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    375348 5lzf:I (4.6) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    375349 5lzf:J (4.6) BS01 rna ? GO:0002181 ... P0AA10 27842381
    375350 5lzf:K (4.6) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    375351 5lzf:K (4.6) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    375352 5lzf:L (4.6) BS01 rna ? GO:0002181 ... P02413 27842381
    375353 5lzf:M (4.6) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    375354 5lzf:M (4.6) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    375355 5lzf:M (4.6) BS03 rna ? GO:0000027 ... P0ADY7 27842381
    375356 5lzf:N (4.6) BS01 rna ? GO:0000027 ... P0AG44 27842381
    375357 5lzf:O (4.6) BS01 rna ? GO:0002181 ... P0C018 27842381
    375358 5lzf:O (4.6) BS02 rna ? GO:0002181 ... P0C018 27842381
    375359 5lzf:P (4.6) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    375360 5lzf:P (4.6) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    375361 5lzf:Q (4.6) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    375362 5lzf:R (4.6) BS01 rna ? GO:0002181 ... P0AG48 27842381
    375363 5lzf:S (4.6) BS01 rna ? GO:0002181 ... P61175 27842381
    375364 5lzf:T (4.6) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    375365 5lzf:U (4.6) BS01 rna ? GO:0000027 ... P60624 27842381
    375366 5lzf:V (4.6) BS01 rna ? GO:0000027 ... P68919 27842381
    375367 5lzf:W (4.6) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    375368 5lzf:W (4.6) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    375369 5lzf:X (4.6) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    375370 5lzf:Y (4.6) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    375371 5lzf:Z (4.6) BS01 rna ? GO:0000027 ... P0AG51 27842381
    375372 5lzf:b (4.6) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    375373 5lzf:c (4.6) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    375374 5lzf:c (4.6) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    375375 5lzf:d (4.6) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    375376 5lzf:d (4.6) BS02 rna ? GO:0000028 ... P0A7V8 27842381
    375377 5lzf:e (4.6) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    375378 5lzf:e (4.6) BS02 rna ? GO:0000028 ... P0A7W1 27842381
    375379 5lzf:f (4.6) BS01 rna ? GO:0003735 ... P02358 27842381
    375380 5lzf:g (4.6) BS01 rna ? GO:0003723 ... P02359 27842381
    375381 5lzf:g (4.6) BS02 rna ? GO:0003723 ... P02359 27842381
    375382 5lzf:h (4.6) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    375383 5lzf:i (4.6) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    375384 5lzf:i (4.6) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    375385 5lzf:j (4.6) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    375386 5lzf:k (4.6) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    375387 5lzf:l (4.6) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    375388 5lzf:m (4.6) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    375389 5lzf:n (4.6) BS01 rna ? GO:0000028 ... P0AG59 27842381
    375390 5lzf:o (4.6) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    375391 5lzf:o (4.6) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    375392 5lzf:p (4.6) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    375393 5lzf:q (4.6) BS01 rna ? GO:0000028 ... P0AG63 27842381
    375394 5lzf:r (4.6) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    375395 5lzf:s (4.6) BS01 rna ? GO:0000028 ... P0A7U3 27842381
    375396 5lzf:t (4.6) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    375397 5lzf:u (4.6) BS01 rna ? GO:0000028 ... P68679 27842381
    375398 5lzg:A (1.13) BS01 7BN ? GO:0005515 ... P01556 28539625
    375399 5lzg:A (1.13) BS02 7BN ? GO:0005515 ... P01556 28539625
    375400 5lzg:B (1.13) BS01 7BN ? GO:0005515 ... P01556 28539625

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).