SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    376201 5lzy:X (3.99) BS01 rna ? GO:0005634 ... G1SE76 27863242
    376202 5lzy:X (3.99) BS02 rna ? GO:0005634 ... G1SE76 27863242
    376203 5lzy:XX (3.99) BS01 rna N/A N/A N/A 27863242
    376204 5lzy:Y (3.99) BS01 rna ? GO:0005737 ... G1SQH0 27863242
    376205 5lzy:Y (3.99) BS02 rna ? GO:0005737 ... G1SQH0 27863242
    376206 5lzy:YY (3.99) BS01 rna N/A N/A N/A 27863242
    376207 5lzy:Z (3.99) BS01 rna ? GO:0005737 ... G1TXF6 27863242
    376208 5lzy:ZZ (3.99) BS01 rna ? GO:0003735 ... G1TDB3 27863242
    376209 5lzy:a (3.99) BS01 rna ? GO:0003735 ... G1SNY0 27863242
    376210 5lzy:aa (3.99) BS01 rna N/A N/A N/A 27863242
    376211 5lzy:aa (3.99) BS02 ZN N/A N/A N/A 27863242
    376212 5lzy:b (3.99) BS01 rna ? GO:0002181 ... G1SGR6 27863242
    376213 5lzy:bb (3.99) BS01 rna ? GO:0003735 ... G1TZ76 27863242
    376214 5lzy:c (3.99) BS01 rna ? GO:0002181 ... G1TDL2 27863242
    376215 5lzy:cc (3.99) BS01 rna ? GO:0000028 ... G1TIB4 27863242
    376216 5lzy:d (3.99) BS01 rna ? GO:0002181 ... G1SHG0 27863242
    376217 5lzy:dd (3.99) BS01 rna ? GO:0002181 ... G1U7M4 27863242
    376218 5lzy:dd (3.99) BS02 ZN ? GO:0002181 ... G1U7M4 27863242
    376219 5lzy:e (3.99) BS01 rna ? GO:0005737 ... G1TUN8 27863242
    376220 5lzy:ee (3.99) BS01 rna ? GO:0005634 ... G1T8A2 27863242
    376221 5lzy:f (3.99) BS01 rna ? GO:0000049 ... G1SF08 27863242
    376222 5lzy:ff (3.99) BS01 rna ? GO:0003735 ... G1SK22 27863242
    376223 5lzy:g (3.99) BS01 rna N/A N/A N/A 27863242
    376224 5lzy:g (3.99) BS02 ZN N/A N/A N/A 27863242
    376225 5lzy:gg (3.99) BS01 rna ? GO:0001891 ... G1SJB4 27863242
    376226 5lzy:h (3.99) BS01 rna ? GO:0000463 ... G1SIT5 27863242
    376227 5lzy:h (3.99) BS02 rna ? GO:0000463 ... G1SIT5 27863242
    376228 5lzy:i (3.99) BS01 rna ? GO:0005737 ... G1TTQ5 27863242
    376229 5lzy:ii (3.99) BS01 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    376230 5lzy:ii (3.99) BS02 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    376231 5lzy:j (3.99) BS01 rna N/A N/A N/A 27863242
    376232 5lzy:j (3.99) BS02 rna N/A N/A N/A 27863242
    376233 5lzy:j (3.99) BS03 ZN N/A N/A N/A 27863242
    376234 5lzy:jj (3.99) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    376235 5lzy:k (3.99) BS01 rna N/A N/A N/A 27863242
    376236 5lzy:l (3.99) BS01 rna ? GO:0005840 ... G1TTN1 27863242
    376237 5lzy:l (3.99) BS02 rna ? GO:0005840 ... G1TTN1 27863242
    376238 5lzy:m (3.99) BS01 rna N/A N/A N/A 27863242
    376239 5lzy:m (3.99) BS02 ZN N/A N/A N/A 27863242
    376240 5lzy:o (3.99) BS01 rna ? GO:0005737 ... G1T040 27863242
    376241 5lzy:o (3.99) BS02 rna ? GO:0005737 ... G1T040 27863242
    376242 5lzy:o (3.99) BS03 rna ? GO:0005737 ... G1T040 27863242
    376243 5lzy:o (3.99) BS04 ZN ? GO:0005737 ... G1T040 27863242
    376244 5lzy:p (3.99) BS01 rna ? GO:0005737 ... G1SY53 27863242
    376245 5lzy:p (3.99) BS02 ZN ? GO:0005737 ... G1SY53 27863242
    376246 5lzy:r (3.99) BS01 rna ? GO:0005737 ... G1U7L1 27863242
    376247 5lzy:s (3.99) BS01 rna N/A N/A N/A 27863242
    376248 5lzy:t (3.99) BS01 rna ? GO:0003723 ... G1SMR7 27863242
    376249 5lzz:A (3.47) BS01 rna ? GO:0002181 ... G1TT27 27863242
    376250 5lzz:A (3.47) BS02 rna ? GO:0002181 ... G1TT27 27863242
    376251 5lzz:AA (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376252 5lzz:B (3.47) BS01 rna ? GO:0003723 ... G1TL06 27863242
    376253 5lzz:BB (3.47) BS01 rna ? GO:0003735 ... G1SS70 27863242
    376254 5lzz:C (3.47) BS01 rna ? GO:0003735 ... G1SVW5 27863242
    376255 5lzz:C (3.47) BS02 rna ? GO:0003735 ... G1SVW5 27863242
    376256 5lzz:CC (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    376257 5lzz:D (3.47) BS01 rna ? GO:0000027 ... P19949 27863242
    376258 5lzz:D (3.47) BS02 rna ? GO:0000027 ... P19949 27863242
    376259 5lzz:DD (3.47) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 27863242
    376260 5lzz:E (3.47) BS01 rna ? GO:0000027 ... G1SKF7 27863242
    376261 5lzz:EE (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    376262 5lzz:F (3.47) BS01 rna ? GO:0000463 ... G1TUB1 27863242
    376263 5lzz:F (3.47) BS02 rna ? GO:0000463 ... G1TUB1 27863242
    376264 5lzz:FF (3.47) BS01 rna ? GO:0003723 ... G1TFM5 27863242
    376265 5lzz:FF (3.47) BS02 rna ? GO:0003723 ... G1TFM5 27863242
    376266 5lzz:G (3.47) BS01 rna ? GO:0003723 ... G1STW0 27863242
    376267 5lzz:G (3.47) BS02 rna ? GO:0003723 ... G1STW0 27863242
    376268 5lzz:GG (3.47) BS01 rna ? GO:0003735 ... G1TM55 27863242
    376269 5lzz:H (3.47) BS01 rna ? GO:0002181 ... G1SWI6 27863242
    376270 5lzz:HH (3.47) BS01 rna ? GO:0003735 ... G1SVB0 27863242
    376271 5lzz:I (3.47) BS01 rna ? GO:0003735 ... B7NZQ2 27863242
    376272 5lzz:I (3.47) BS02 rna ? GO:0003735 ... B7NZQ2 27863242
    376273 5lzz:II (3.47) BS01 rna ? GO:0003735 ... G1TJW1 27863242
    376274 5lzz:II (3.47) BS02 rna ? GO:0003735 ... G1TJW1 27863242
    376275 5lzz:J (3.47) BS01 rna ? GO:0003735 ... G1TUB8 27863242
    376276 5lzz:J (3.47) BS02 rna ? GO:0003735 ... G1TUB8 27863242
    376277 5lzz:J (3.47) BS03 rna ? GO:0003735 ... G1TUB8 27863242
    376278 5lzz:JJ (3.47) BS01 rna ? GO:0003723 ... B7NZS8 27863242
    376279 5lzz:KK (3.47) BS01 rna ? GO:0003723 ... G1TPV3 27863242
    376280 5lzz:L (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376281 5lzz:L (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    376282 5lzz:LL (3.47) BS01 rna ? GO:0003735 ... G1TRM4 27863242
    376283 5lzz:M (3.47) BS01 rna ? GO:0003723 ... G1SZ12 27863242
    376284 5lzz:MM (3.47) BS01 rna ? GO:0003735 ... G1SFR8 27863242
    376285 5lzz:N (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376286 5lzz:N (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    376287 5lzz:NN (3.47) BS01 rna ? GO:0003735 ... G1SP51 27863242
    376288 5lzz:O (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376289 5lzz:OO (3.47) BS01 rna ? GO:0003735 ... G1T1F0 27863242
    376290 5lzz:P (3.47) BS01 rna ? GO:0002181 ... G1SCJ6 27863242
    376291 5lzz:P (3.47) BS02 rna ? GO:0002181 ... G1SCJ6 27863242
    376292 5lzz:PP (3.47) BS01 rna ? GO:0000028 ... G1U0Q2 27863242
    376293 5lzz:Q (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376294 5lzz:QQ (3.47) BS01 rna ? GO:0000462 ... G1SGX4 27863242
    376295 5lzz:R (3.47) BS01 rna N/A GO:0003723 ... N/A 27863242
    376296 5lzz:R (3.47) BS02 rna N/A GO:0003723 ... N/A 27863242
    376297 5lzz:RR (3.47) BS01 rna ? GO:0003735 ... G1TU13 27863242
    376298 5lzz:S (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376299 5lzz:S (3.47) BS02 rna N/A GO:0003735 ... N/A 27863242
    376300 5lzz:SS (3.47) BS01 rna ? GO:0003676 ... G1TPG3 27863242
    376301 5lzz:T (3.47) BS01 rna ? GO:0003735 ... G1SHQ2 27863242
    376302 5lzz:T (3.47) BS02 rna ? GO:0003735 ... G1SHQ2 27863242
    376303 5lzz:TT (3.47) BS01 rna ? GO:0000028 ... G1TN62 27863242
    376304 5lzz:U (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376305 5lzz:UU (3.47) BS01 rna ? GO:0003723 ... G1SIZ2 27863242
    376306 5lzz:V (3.47) BS01 rna ? GO:0003735 ... G1T6D1 27863242
    376307 5lzz:W (3.47) BS01 rna ? GO:0000027 ... G1SE28 27863242
    376308 5lzz:WW (3.47) BS01 rna ? GO:0003735 ... G1TG89 27863242
    376309 5lzz:X (3.47) BS01 rna ? GO:0003735 ... G1SE76 27863242
    376310 5lzz:X (3.47) BS02 rna ? GO:0003735 ... G1SE76 27863242
    376311 5lzz:XX (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376312 5lzz:Y (3.47) BS01 rna ? GO:0003723 ... G1SQH0 27863242
    376313 5lzz:Y (3.47) BS02 rna ? GO:0003723 ... G1SQH0 27863242
    376314 5lzz:YY (3.47) BS01 rna ? GO:0003735 ... G1T3D8 27863242
    376315 5lzz:Z (3.47) BS01 rna ? GO:0003735 ... G1TXF6 27863242
    376316 5lzz:ZZ (3.47) BS01 rna ? GO:0003735 ... G1TDB3 27863242
    376317 5lzz:a (3.47) BS01 rna ? GO:0003735 ... G1SNY0 27863242
    376318 5lzz:aa (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376319 5lzz:aa (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    376320 5lzz:b (3.47) BS01 rna ? GO:0002181 ... G1SGR6 27863242
    376321 5lzz:bb (3.47) BS01 rna ? GO:0003735 ... G1TZ76 27863242
    376322 5lzz:c (3.47) BS01 rna ? GO:0002181 ... G1TDL2 27863242
    376323 5lzz:cc (3.47) BS01 rna ? GO:0000028 ... G1TIB4 27863242
    376324 5lzz:d (3.47) BS01 rna ? GO:0002181 ... G1SHG0 27863242
    376325 5lzz:dd (3.47) BS01 rna ? GO:0002181 ... G1U7M4 27863242
    376326 5lzz:dd (3.47) BS02 ZN ? GO:0002181 ... G1U7M4 27863242
    376327 5lzz:e (3.47) BS01 rna ? GO:0003735 ... G1TUN8 27863242
    376328 5lzz:ee (3.47) BS01 rna ? GO:0003735 ... G1T8A2 27863242
    376329 5lzz:f (3.47) BS01 rna ? GO:0000049 ... G1SF08 27863242
    376330 5lzz:ff (3.47) BS01 rna ? GO:0003735 ... G1SK22 27863242
    376331 5lzz:ff (3.47) BS02 ZN ? GO:0003735 ... G1SK22 27863242
    376332 5lzz:g (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376333 5lzz:gg (3.47) BS01 rna ? GO:0001891 ... G1SJB4 27863242
    376334 5lzz:h (3.47) BS01 rna ? GO:0000463 ... G1SIT5 27863242
    376335 5lzz:h (3.47) BS02 rna ? GO:0000463 ... G1SIT5 27863242
    376336 5lzz:i (3.47) BS01 rna ? GO:0003735 ... G1TTQ5 27863242
    376337 5lzz:ii (3.47) BS01 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    376338 5lzz:ii (3.47) BS02 rna 3.1.-.- GO:0001833 ... Q9BRX2 27863242
    376339 5lzz:j (3.47) BS01 rna ? GO:0003723 ... U3KPD5 27863242
    376340 5lzz:j (3.47) BS02 rna ? GO:0003723 ... U3KPD5 27863242
    376341 5lzz:j (3.47) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    376342 5lzz:jj (3.47) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    376343 5lzz:k (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376344 5lzz:l (3.47) BS01 rna ? GO:0003735 ... G1TTN1 27863242
    376345 5lzz:l (3.47) BS02 rna ? GO:0003735 ... G1TTN1 27863242
    376346 5lzz:m (3.47) BS01 rna N/A GO:0003735 ... N/A 27863242
    376347 5lzz:m (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    376348 5lzz:o (3.47) BS01 rna ? GO:0003735 ... G1T040 27863242
    376349 5lzz:o (3.47) BS02 rna ? GO:0003735 ... G1T040 27863242
    376350 5lzz:o (3.47) BS03 rna ? GO:0003735 ... G1T040 27863242
    376351 5lzz:o (3.47) BS04 ZN ? GO:0003735 ... G1T040 27863242
    376352 5lzz:p (3.47) BS01 rna ? GO:0003735 ... G1SY53 27863242
    376353 5lzz:p (3.47) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    376354 5lzz:r (3.47) BS01 rna ? GO:0003735 ... G1U7L1 27863242
    376355 5lzz:s (3.47) BS01 rna N/A GO:0042254 ... N/A 27863242
    376356 5lzz:t (3.47) BS01 rna ? GO:0003723 ... G1SMR7 27863242
    376357 5m00:A (1.95) BS01 peptide ? N/A P01899 N/A
    376358 5m00:H (1.95) BS01 peptide ? N/A P04213
    Q7TND8
    N/A
    376359 5m01:A (1.95) BS01 peptide ? N/A P01899 N/A
    376360 5m01:H (1.95) BS01 peptide ? N/A P01851
    P04213
    N/A
    376361 5m02:A (1.75) BS01 peptide ? N/A P01899 N/A
    376362 5m02:H (1.75) BS01 peptide ? N/A P01851
    P04213
    N/A
    376363 5m03:A (1.05) BS01 MAN ? GO:0004559 ... D6D1V7 27992199
    376364 5m03:A (1.05) BS02 MAN ? GO:0004559 ... D6D1V7 27992199
    376365 5m03:A (1.05) BS03 MAN ? GO:0004559 ... D6D1V7 27992199
    376366 5m03:A (1.05) BS04 MNM ? GO:0004559 ... D6D1V7 27992199
    376367 5m04:A (1.85) BS01 GDP 3.6.5.- GO:0000287 ... P42641 28223358 MOAD: Kd=0.46uM
    376368 5m05:A (2.675) BS01 52E ? GO:0003774 ... P10587 27815532
    376369 5m05:A (2.675) BS02 MG ? GO:0003774 ... P10587 27815532
    376370 5m05:A (2.675) BS03 ADP ? GO:0003774 ... P10587 27815532
    376371 5m06:B (2.0) BS01 ADP 2.7.11.1 GO:0004672 ... P9WI69 28054744
    376372 5m06:B (2.0) BS02 CA 2.7.11.1 GO:0004672 ... P9WI69 28054744
    376373 5m0b:A (1.506) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    376374 5m0b:A (1.506) BS02 IQU 2.7.11.11 GO:0000287 ... P25321 N/A
    376375 5m0c:A (1.734) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    376376 5m0c:A (1.734) BS02 7CB 2.7.11.11 GO:0000287 ... P25321 N/A
    376377 5m0d:A (2.4) BS01 MAN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376378 5m0d:A (2.4) BS02 MAN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376379 5m0d:A (2.4) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376380 5m0d:A (2.4) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376381 5m0d:A (2.4) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    376382 5m0d:A (2.4) BS06 7C8 3.1.4.39 GO:0001953 ... Q64610 28165241
    376383 5m0e:A (1.95) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376384 5m0e:A (1.95) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    376385 5m0e:A (1.95) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    376386 5m0e:A (1.95) BS04 5JK 3.1.4.39 GO:0001953 ... Q64610 28165241
    376387 5m0e:A (1.95) BS05 7CR 3.1.4.39 GO:0001953 ... Q64610 28165241
    376388 5m0i:A (2.41) BS01 rna ? GO:0003723 ... P36068 28092367
    376389 5m0i:B (2.41) BS01 rna ? GO:0003723 ... P36068 28092367
    376390 5m0i:B (2.41) BS02 peptide ? GO:0003723 ... P36068 28092367
    376391 5m0i:C (2.41) BS01 rna ? GO:0003723 ... P36068 28092367
    376392 5m0i:C (2.41) BS02 rna ? GO:0003723 ... P36068 28092367
    376393 5m0i:C (2.41) BS03 peptide ? GO:0003723 ... P36068 28092367
    376394 5m0i:D (2.41) BS01 rna ? GO:0003723 ... P36068 28092367
    376395 5m0i:D (2.41) BS02 peptide ? GO:0003723 ... P36068 28092367
    376396 5m0j:A (2.8) BS01 peptide ? GO:0003723 ... P36068
    P38272
    28092367
    376397 5m0j:A (2.8) BS02 peptide ? GO:0003723 ... P36068
    P38272
    28092367
    376398 5m0j:A (2.8) BS03 rna ? GO:0003723 ... P36068
    P38272
    28092367
    376399 5m0j:B (2.8) BS01 peptide ? GO:0003723 ... P36068
    P38272
    28092367
    376400 5m0j:B (2.8) BS02 peptide ? GO:0003723 ... P36068
    P38272
    28092367

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).