SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    378001 5mc6:BF (3.8) BS02 rna ? GO:0002181 ... P0CX82 27980209
    378002 5mc6:BG (3.8) BS01 rna ? GO:0002181 ... P38061 27980209
    378003 5mc6:BH (3.8) BS01 rna ? GO:0002181 ... P0CX23 27980209
    378004 5mc6:BH (3.8) BS02 rna ? GO:0002181 ... P0CX23 27980209
    378005 5mc6:BI (3.8) BS01 rna ? GO:0000027 ... P26321 27980209
    378006 5mc6:BI (3.8) BS02 rna ? GO:0000027 ... P26321 27980209
    378007 5mc6:BJ (3.8) BS01 rna ? GO:0002181 ... Q02753 27980209
    378008 5mc6:BJ (3.8) BS02 rna ? GO:0002181 ... Q02753 27980209
    378009 5mc6:BK (3.8) BS01 rna ? GO:0000027 ... P05744 27980209
    378010 5mc6:BL (3.8) BS01 rna ? GO:0002181 ... P05749 27980209
    378011 5mc6:BM (3.8) BS01 rna ? GO:0000027 ... Q02326 27980209
    378012 5mc6:BN (3.8) BS01 rna ? GO:0002181 ... P87262 27980209
    378013 5mc6:BO (3.8) BS01 rna ? GO:0000463 ... P05737 27980209
    378014 5mc6:BO (3.8) BS02 rna ? GO:0000463 ... P05737 27980209
    378015 5mc6:BP (3.8) BS01 rna ? GO:0000463 ... P0CX84 27980209
    378016 5mc6:BP (3.8) BS02 rna ? GO:0000463 ... P0CX84 27980209
    378017 5mc6:BT (3.8) BS01 rna ? GO:0002182 ... P23301 27980209
    378018 5mc6:BT (3.8) BS02 rna ? GO:0002182 ... P23301 27980209
    378019 5mc6:C (3.8) BS01 rna ? GO:0000054 ... Q08745 27980209
    378020 5mc6:D (3.8) BS01 rna ? GO:0000028 ... P48589 27980209
    378021 5mc6:E (3.8) BS01 rna ? GO:0000028 ... Q01855 27980209
    378022 5mc6:F (3.8) BS01 rna ? GO:0000462 ... P0CX51 27980209
    378023 5mc6:G (3.8) BS01 rna ? GO:0000028 ... P14127 27980209
    378024 5mc6:H (3.8) BS01 rna ? GO:0000054 ... P0CX55 27980209
    378025 5mc6:H (3.8) BS02 rna ? GO:0000054 ... P0CX55 27980209
    378026 5mc6:I (3.8) BS01 rna ? GO:0000028 ... P07280 27980209
    378027 5mc6:J (3.8) BS01 rna ? GO:0000462 ... P38701 27980209
    378028 5mc6:K (3.8) BS01 rna ? GO:0002181 ... Q3E792 27980209
    378029 5mc6:L (3.8) BS01 rna ? GO:0000028 ... P0C0X0 27980209
    378030 5mc6:L (3.8) BS02 rna ? GO:0000028 ... P0C0X0 27980209
    378031 5mc6:M (3.8) BS01 rna ? GO:0002181 ... P41057 27980209
    378032 5mc6:N (3.8) BS01 rna ? GO:0000028 ... P05759 27980209
    378033 5mc6:O (3.8) BS01 rna ? GO:0001965 ... P38011 27980209
    378034 5mc6:P (3.8) BS01 rna ? GO:0000028 ... P32905 27980209
    378035 5mc6:Q (3.8) BS01 rna ? GO:0000462 ... P33442 27980209
    378036 5mc6:R (3.8) BS01 rna ? GO:0000054 ... P25443 27980209
    378037 5mc6:S (3.8) BS01 rna ? GO:0002181 ... P0CX35 27980209
    378038 5mc6:T (3.8) BS01 rna ? GO:0000462 ... P0CX37 27980209
    378039 5mc6:U (3.8) BS01 rna ? GO:0002181 ... P26786 27980209
    378040 5mc6:V (3.8) BS01 rna ? GO:0000462 ... P0CX39 27980209
    378041 5mc6:V (3.8) BS02 rna ? GO:0000462 ... P0CX39 27980209
    378042 5mc6:W (3.8) BS01 rna ? GO:0000462 ... O13516 27980209
    378043 5mc6:X (3.8) BS01 rna ? GO:0000028 ... P0CX47 27980209
    378044 5mc6:Y (3.8) BS01 rna ? GO:0000462 ... P05756 27980209
    378045 5mc6:Y (3.8) BS02 rna ? GO:0000462 ... P05756 27980209
    378046 5mc6:Z (3.8) BS01 rna ? GO:0000028 ... P06367 27980209
    378047 5mc6:b (3.8) BS01 rna ? GO:0002181 ... P0C0W1 27980209
    378048 5mc6:c (3.8) BS01 rna ? GO:0000462 ... P0CX29 27980209
    378049 5mc6:c (3.8) BS02 rna ? GO:0000462 ... P0CX29 27980209
    378050 5mc6:d (3.8) BS01 rna ? GO:0000462 ... P0CX31 27980209
    378051 5mc6:e (3.8) BS01 rna ? GO:0000054 ... P39938 27980209
    378052 5mc6:f (3.8) BS01 rna ? GO:0000028 ... P35997 27980209
    378053 5mc6:g (3.8) BS01 rna ? GO:0002181 ... P0CX33 27980209
    378054 5mc6:h (3.8) BS01 rna 3.6.4.13 GO:0000956 ... P35207 27980209
    378055 5mc6:h (3.8) BS02 rna 3.6.4.13 GO:0000956 ... P35207 27980209
    378056 5mc8:A (1.18) BS01 DGO ? GO:0004559 ... D6D1V7 27992199
    378057 5mc8:A (1.18) BS02 MAN ? GO:0004559 ... D6D1V7 27992199
    378058 5mc8:A (1.18) BS03 MAN ? GO:0004559 ... D6D1V7 27992199
    378059 5mc8:A (1.18) BS04 MAN ? GO:0004559 ... D6D1V7 27992199
    378060 5mc9:A (2.13) BS01 CA ? GO:0007155 ... P19137 28132784
    378061 5mc9:A (2.13) BS02 CA ? GO:0007155 ... P19137 28132784
    378062 5mcb:A (1.95) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 28625148
    378063 5mcb:A (1.95) BS02 CGG 2.4.1.1 GO:0000166 ... P00489 28625148 MOAD: Ki=2.5mM
    378064 5mco:A (2.49) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 28923680
    378065 5mco:A (2.49) BS02 BSD 3.4.23.46 GO:0004190 ... P56817 28923680 BindingDB: IC50=1nM, Ki=1.8nM
    378066 5mcp:A (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378067 5mcp:A (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378068 5mcp:A (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378069 5mcp:B (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378070 5mcp:B (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378071 5mcp:B (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378072 5mcp:C (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378073 5mcp:C (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378074 5mcp:C (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378075 5mcp:D (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378076 5mcp:D (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378077 5mcp:D (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378078 5mcp:E (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378079 5mcp:E (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378080 5mcp:E (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378081 5mcp:F (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378082 5mcp:F (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378083 5mcp:F (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378084 5mcp:G (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378085 5mcp:G (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378086 5mcp:G (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378087 5mcp:H (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378088 5mcp:H (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    378089 5mcq:A (1.82) BS01 peptide 3.4.23.46 GO:0004190 ... P56817 28923680
    378090 5mcs:A (-1.00) BS01 HEC ? GO:0005506 ... Q74AE4 28377068
    378091 5mct:A (1.446) BS01 dna ? GO:0000976 ... P04637 30057026
    378092 5mct:A (1.446) BS02 ZN ? GO:0000976 ... P04637 30057026
    378093 5mct:B (1.446) BS01 dna ? GO:0000976 ... P04637 30057026
    378094 5mct:B (1.446) BS02 ZN ? GO:0000976 ... P04637 30057026
    378095 5mcu:A (1.7) BS01 dna ? GO:0000976 ... P04637 30057026
    378096 5mcu:A (1.7) BS02 ZN ? GO:0000976 ... P04637 30057026
    378097 5mcu:B (1.7) BS01 dna ? GO:0000976 ... P04637 30057026
    378098 5mcu:B (1.7) BS02 ZN ? GO:0000976 ... P04637 30057026
    378099 5mcv:A (1.6) BS01 dna ? GO:0000976 ... P04637 30057026
    378100 5mcv:A (1.6) BS02 ZN ? GO:0000976 ... P04637 30057026
    378101 5mcv:B (1.6) BS01 dna ? GO:0000976 ... P04637 30057026
    378102 5mcv:B (1.6) BS02 ZN ? GO:0000976 ... P04637 30057026
    378103 5mcw:A (1.897) BS01 dna ? GO:0000976 ... P04637 30057026
    378104 5mcw:A (1.897) BS02 ZN ? GO:0000976 ... P04637 30057026
    378105 5mcw:B (1.897) BS01 dna ? GO:0000976 ... P04637 30057026
    378106 5mcw:B (1.897) BS02 ZN ? GO:0000976 ... P04637 30057026
    378107 5mdh:A (2.4) BS01 NAD 1.1.1.37
    1.1.1.96
    GO:0003824 ... P11708 10075524
    378108 5mdh:A (2.4) BS02 MAK 1.1.1.37
    1.1.1.96
    GO:0003824 ... P11708 10075524
    378109 5mdh:B (2.4) BS01 NAD 1.1.1.37
    1.1.1.96
    GO:0003824 ... P11708 10075524
    378110 5mdh:B (2.4) BS02 MAK 1.1.1.37
    1.1.1.96
    GO:0003824 ... P11708 10075524
    378111 5mdj:L (1.48) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    378112 5mdj:L (1.48) BS02 MG 1.12.99.6 GO:0005515 ... P31891 29463722
    378113 5mdj:S (1.48) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 29463722
    378114 5mdj:S (1.48) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    378115 5mdj:S (1.48) BS03 F4S 1.12.99.6 GO:0005515 ... P31892 29463722
    378116 5mdk:L (1.5) BS01 MG 1.12.99.6 GO:0005515 ... P31891 29463722
    378117 5mdk:L (1.5) BS02 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    378118 5mdk:S (1.5) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 29463722
    378119 5mdk:S (1.5) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    378120 5mdk:S (1.5) BS03 F4S 1.12.99.6 GO:0005515 ... P31892 29463722
    378121 5mdl:L (1.41) BS01 NFV 1.12.99.6 GO:0005515 ... P31891 29463722
    378122 5mdl:L (1.41) BS02 MG 1.12.99.6 GO:0005515 ... P31891 29463722
    378123 5mdl:L (1.41) BS03 OXY 1.12.99.6 GO:0005515 ... P31891 29463722
    378124 5mdl:S (1.41) BS01 SF4 1.12.99.6 GO:0005515 ... P31892 29463722
    378125 5mdl:S (1.41) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 29463722
    378126 5mdl:S (1.41) BS03 F4S 1.12.99.6 GO:0005515 ... P31892 29463722
    378127 5mdl:S (1.41) BS04 OXY 1.12.99.6 GO:0005515 ... P31892 29463722
    378128 5mdn:A (2.8) BS01 MG 2.7.7.7 GO:0000166 ... A3MV07 28471366
    378129 5mdn:B (2.8) BS01 MG 2.7.7.7 GO:0000166 ... A3MV07 28471366
    378130 5mdo:A (1.95) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378131 5mdo:A (1.95) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378132 5mdo:A (1.95) BS03 C8E ? GO:0009279 ... L0RVU0 29335469
    378133 5mdo:B (1.95) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378134 5mdo:B (1.95) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378135 5mdo:C (1.95) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378136 5mdo:D (1.95) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378137 5mdo:D (1.95) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378138 5mdo:E (1.95) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378139 5mdo:E (1.95) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378140 5mdr:A (1.9) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378141 5mdr:A (1.9) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378142 5mdr:B (1.9) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378143 5mdr:C (1.9) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378144 5mdr:D (1.9) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378145 5mdr:D (1.9) BS02 C8E ? GO:0009279 ... L0RVU0 29335469
    378146 5mdr:E (1.9) BS01 C8E ? GO:0009279 ... L0RVU0 29335469
    378147 5mdv:6 (2.97) BS01 rna ? GO:0072344 ... P36675 27934701
    378148 5mdv:6 (2.97) BS02 rna ? GO:0072344 ... P36675 27934701
    378149 5mdv:7 (2.97) BS01 rna ? GO:0003747 ... P07012 27934701
    378150 5mdv:7 (2.97) BS02 rna ? GO:0003747 ... P07012 27934701
    378151 5mdv:7 (2.97) BS03 rna ? GO:0003747 ... P07012 27934701
    378152 5mdv:B (2.97) BS01 rna ? GO:0000027 ... P60422 27934701
    378153 5mdv:B (2.97) BS02 MG ? GO:0000027 ... P60422 27934701
    378154 5mdv:C (2.97) BS01 rna ? GO:0000027 ... P60438 27934701
    378155 5mdv:D (2.97) BS01 rna ? GO:0001070 ... P60723 27934701
    378156 5mdv:E (2.97) BS01 rna ? GO:0000027 ... P62399 27934701
    378157 5mdv:E (2.97) BS02 rna ? GO:0000027 ... P62399 27934701
    378158 5mdv:E (2.97) BS03 rna ? GO:0000027 ... P62399 27934701
    378159 5mdv:F (2.97) BS01 rna ? GO:0000027 ... P0AG55 27934701
    378160 5mdv:G (2.97) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    378161 5mdv:H (2.97) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    378162 5mdv:I (2.97) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    378163 5mdv:J (2.97) BS01 rna ? GO:0002181 ... P0AA10 27934701
    378164 5mdv:K (2.97) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    378165 5mdv:K (2.97) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    378166 5mdv:L (2.97) BS01 rna ? GO:0002181 ... P02413 27934701
    378167 5mdv:M (2.97) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    378168 5mdv:M (2.97) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    378169 5mdv:N (2.97) BS01 rna ? GO:0000027 ... P0AG44 27934701
    378170 5mdv:O (2.97) BS01 rna ? GO:0002181 ... P0C018 27934701
    378171 5mdv:O (2.97) BS02 rna ? GO:0002181 ... P0C018 27934701
    378172 5mdv:P (2.97) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    378173 5mdv:P (2.97) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    378174 5mdv:Q (2.97) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    378175 5mdv:R (2.97) BS01 rna ? GO:0002181 ... P0AG48 27934701
    378176 5mdv:S (2.97) BS01 rna ? GO:0002181 ... P61175 27934701
    378177 5mdv:T (2.97) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    378178 5mdv:U (2.97) BS01 rna ? GO:0000027 ... P60624 27934701
    378179 5mdv:V (2.97) BS01 rna ? GO:0000027 ... P68919 27934701
    378180 5mdv:V (2.97) BS02 rna ? GO:0000027 ... P68919 27934701
    378181 5mdv:W (2.97) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    378182 5mdv:W (2.97) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    378183 5mdv:X (2.97) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    378184 5mdv:Y (2.97) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    378185 5mdv:Z (2.97) BS01 rna ? GO:0000027 ... P0AG51 27934701
    378186 5mdv:Z (2.97) BS02 rna ? GO:0000027 ... P0AG51 27934701
    378187 5mdv:a (2.97) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    378188 5mdv:a (2.97) BS02 ZN ? GO:0002181 ... P0A7M9 27934701
    378189 5mdv:b (2.97) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    378190 5mdv:c (2.97) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    378191 5mdv:d (2.97) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    378192 5mdv:e (2.97) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    378193 5mdv:f (2.97) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    378194 5mdv:f (2.97) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    378195 5mdv:g (2.97) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    378196 5mdv:h (2.97) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    378197 5mdv:i (2.97) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    378198 5mdv:i (2.97) BS02 MG ? GO:0000028 ... P0A7V8 27934701
    378199 5mdv:j (2.97) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    378200 5mdv:k (2.97) BS01 rna ? GO:0002181 ... P02358 27934701

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).