SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    378201 5mdv:l (2.97) BS01 rna ? GO:0000028 ... P02359 27934701
    378202 5mdv:m (2.97) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    378203 5mdv:n (2.97) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    378204 5mdv:n (2.97) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    378205 5mdv:o (2.97) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    378206 5mdv:p (2.97) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    378207 5mdv:q (2.97) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    378208 5mdv:r (2.97) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    378209 5mdv:r (2.97) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    378210 5mdv:r (2.97) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    378211 5mdv:s (2.97) BS01 rna ? GO:0000028 ... P0AG59 27934701
    378212 5mdv:t (2.97) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    378213 5mdv:t (2.97) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    378214 5mdv:u (2.97) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    378215 5mdv:v (2.97) BS01 rna ? GO:0000028 ... P0AG63 27934701
    378216 5mdv:w (2.97) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    378217 5mdv:x (2.97) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    378218 5mdv:y (2.97) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    378219 5mdv:z (2.97) BS01 rna ? GO:0000028 ... P68679 27934701
    378220 5mdw:6 (3.06) BS01 rna ? GO:0072344 ... P36675 27934701
    378221 5mdw:7 (3.06) BS01 rna ? GO:0003747 ... P07012 27934701
    378222 5mdw:7 (3.06) BS02 rna ? GO:0003747 ... P07012 27934701
    378223 5mdw:B (3.06) BS01 rna ? GO:0000027 ... P60422 27934701
    378224 5mdw:C (3.06) BS01 rna ? GO:0000027 ... P60438 27934701
    378225 5mdw:D (3.06) BS01 rna ? GO:0001070 ... P60723 27934701
    378226 5mdw:E (3.06) BS01 rna ? GO:0000027 ... P62399 27934701
    378227 5mdw:E (3.06) BS02 rna ? GO:0000027 ... P62399 27934701
    378228 5mdw:E (3.06) BS03 rna ? GO:0000027 ... P62399 27934701
    378229 5mdw:F (3.06) BS01 rna ? GO:0000027 ... P0AG55 27934701
    378230 5mdw:G (3.06) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    378231 5mdw:H (3.06) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    378232 5mdw:I (3.06) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    378233 5mdw:J (3.06) BS01 rna ? GO:0002181 ... P0AA10 27934701
    378234 5mdw:K (3.06) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    378235 5mdw:K (3.06) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    378236 5mdw:L (3.06) BS01 rna ? GO:0002181 ... P02413 27934701
    378237 5mdw:M (3.06) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    378238 5mdw:M (3.06) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    378239 5mdw:N (3.06) BS01 rna ? GO:0000027 ... P0AG44 27934701
    378240 5mdw:O (3.06) BS01 rna ? GO:0002181 ... P0C018 27934701
    378241 5mdw:O (3.06) BS02 rna ? GO:0002181 ... P0C018 27934701
    378242 5mdw:P (3.06) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    378243 5mdw:P (3.06) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    378244 5mdw:Q (3.06) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    378245 5mdw:R (3.06) BS01 rna ? GO:0002181 ... P0AG48 27934701
    378246 5mdw:S (3.06) BS01 rna ? GO:0002181 ... P61175 27934701
    378247 5mdw:T (3.06) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    378248 5mdw:U (3.06) BS01 rna ? GO:0000027 ... P60624 27934701
    378249 5mdw:V (3.06) BS01 rna ? GO:0000027 ... P68919 27934701
    378250 5mdw:V (3.06) BS02 rna ? GO:0000027 ... P68919 27934701
    378251 5mdw:W (3.06) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    378252 5mdw:W (3.06) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    378253 5mdw:X (3.06) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    378254 5mdw:Y (3.06) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    378255 5mdw:Z (3.06) BS01 rna ? GO:0000027 ... P0AG51 27934701
    378256 5mdw:Z (3.06) BS02 rna ? GO:0000027 ... P0AG51 27934701
    378257 5mdw:a (3.06) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    378258 5mdw:b (3.06) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    378259 5mdw:c (3.06) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    378260 5mdw:d (3.06) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    378261 5mdw:e (3.06) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    378262 5mdw:f (3.06) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    378263 5mdw:f (3.06) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    378264 5mdw:g (3.06) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    378265 5mdw:h (3.06) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    378266 5mdw:i (3.06) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    378267 5mdw:j (3.06) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    378268 5mdw:k (3.06) BS01 rna ? GO:0002181 ... P02358 27934701
    378269 5mdw:l (3.06) BS01 rna ? GO:0000028 ... P02359 27934701
    378270 5mdw:m (3.06) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    378271 5mdw:n (3.06) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    378272 5mdw:n (3.06) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    378273 5mdw:o (3.06) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    378274 5mdw:p (3.06) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    378275 5mdw:q (3.06) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    378276 5mdw:r (3.06) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    378277 5mdw:r (3.06) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    378278 5mdw:r (3.06) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    378279 5mdw:s (3.06) BS01 rna ? GO:0000028 ... P0AG59 27934701
    378280 5mdw:t (3.06) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    378281 5mdw:t (3.06) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    378282 5mdw:u (3.06) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    378283 5mdw:v (3.06) BS01 rna ? GO:0000028 ... P0AG63 27934701
    378284 5mdw:w (3.06) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    378285 5mdw:x (3.06) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    378286 5mdw:y (3.06) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    378287 5mdw:z (3.06) BS01 rna ? GO:0000028 ... P68679 27934701
    378288 5mdx:1 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    378289 5mdx:1 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    378290 5mdx:1 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378291 5mdx:1 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    378292 5mdx:1 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378293 5mdx:1 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378294 5mdx:1 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    378295 5mdx:1 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    378296 5mdx:1 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378297 5mdx:1 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378298 5mdx:1 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378299 5mdx:1 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378300 5mdx:1 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    378301 5mdx:1 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    378302 5mdx:1 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    378303 5mdx:2 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    378304 5mdx:2 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    378305 5mdx:2 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378306 5mdx:2 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    378307 5mdx:2 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378308 5mdx:2 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378309 5mdx:2 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    378310 5mdx:2 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    378311 5mdx:2 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378312 5mdx:2 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378313 5mdx:2 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378314 5mdx:2 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378315 5mdx:3 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    378316 5mdx:3 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    378317 5mdx:3 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378318 5mdx:3 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    378319 5mdx:3 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378320 5mdx:3 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378321 5mdx:3 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    378322 5mdx:3 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    378323 5mdx:3 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378324 5mdx:3 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378325 5mdx:3 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378326 5mdx:3 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378327 5mdx:4 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378328 5mdx:4 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378329 5mdx:4 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378330 5mdx:4 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378331 5mdx:4 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378332 5mdx:4 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378333 5mdx:4 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378334 5mdx:4 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378335 5mdx:4 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378336 5mdx:4 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378337 5mdx:5 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    378338 5mdx:5 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    378339 5mdx:5 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378340 5mdx:5 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    378341 5mdx:5 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378342 5mdx:5 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378343 5mdx:5 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    378344 5mdx:5 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    378345 5mdx:5 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378346 5mdx:5 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378347 5mdx:5 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378348 5mdx:5 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378349 5mdx:5 (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    378350 5mdx:5 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    378351 5mdx:5 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    378352 5mdx:6 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    378353 5mdx:6 (5.3) BS02 CLA ? GO:0009765 ... P04778 28604725
    378354 5mdx:6 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378355 5mdx:6 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    378356 5mdx:6 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378357 5mdx:6 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378358 5mdx:6 (5.3) BS07 CLA ? GO:0009765 ... P04778 28604725
    378359 5mdx:6 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    378360 5mdx:6 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378361 5mdx:6 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378362 5mdx:6 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378363 5mdx:6 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378364 5mdx:7 (5.3) BS01 CLA ? GO:0009765 ... P04778 28604725
    378365 5mdx:7 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    378366 5mdx:7 (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378367 5mdx:7 (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    378368 5mdx:7 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    378369 5mdx:7 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378370 5mdx:7 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    378371 5mdx:7 (5.3) BS08 CLA ? GO:0009765 ... P04778 28604725
    378372 5mdx:7 (5.3) BS09 CLA ? GO:0009765 ... P04778 28604725
    378373 5mdx:7 (5.3) BS10 CLA ? GO:0009765 ... P04778 28604725
    378374 5mdx:7 (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378375 5mdx:7 (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378376 5mdx:8 (5.3) BS01 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378377 5mdx:8 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378378 5mdx:8 (5.3) BS03 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378379 5mdx:8 (5.3) BS04 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378380 5mdx:8 (5.3) BS05 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378381 5mdx:8 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378382 5mdx:8 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378383 5mdx:8 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    378384 5mdx:8 (5.3) BS09 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378385 5mdx:8 (5.3) BS10 CLA ? GO:0009765 ... Q9LMQ2 28604725
    378386 5mdx:A (5.3) BS01 peptide 1.10.3.9 GO:0003729 ... P83755 28604725
    378387 5mdx:A (5.3) BS02 peptide 1.10.3.9 GO:0003729 ... P83755 28604725
    378388 5mdx:A (5.3) BS03 FE2 1.10.3.9 GO:0003729 ... P83755 28604725
    378389 5mdx:A (5.3) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    378390 5mdx:A (5.3) BS05 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    378391 5mdx:A (5.3) BS06 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    378392 5mdx:A (5.3) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 28604725
    378393 5mdx:A (5.3) BS08 PHO 1.10.3.9 GO:0003729 ... P83755 28604725
    378394 5mdx:B (5.3) BS01 CLA ? GO:0003729 ... P56777 28604725
    378395 5mdx:B (5.3) BS02 CLA ? GO:0003729 ... P56777 28604725
    378396 5mdx:B (5.3) BS03 CLA ? GO:0003729 ... P56777 28604725
    378397 5mdx:B (5.3) BS04 CLA ? GO:0003729 ... P56777 28604725
    378398 5mdx:B (5.3) BS05 CLA ? GO:0003729 ... P56777 28604725
    378399 5mdx:B (5.3) BS06 CLA ? GO:0003729 ... P56777 28604725
    378400 5mdx:B (5.3) BS07 CLA ? GO:0003729 ... P56777 28604725

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).