SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    378601 5mdx:s (5.3) BS05 CLA ? GO:0009765 ... Q9XF89 28604725
    378602 5mdx:s (5.3) BS06 CHL ? GO:0009765 ... Q9XF89 28604725
    378603 5mdx:s (5.3) BS07 CHL ? GO:0009765 ... Q9XF89 28604725
    378604 5mdx:s (5.3) BS08 CLA ? GO:0009765 ... Q9XF89 28604725
    378605 5mdx:s (5.3) BS09 CLA ? GO:0009765 ... Q9XF89 28604725
    378606 5mdx:s (5.3) BS10 CLA ? GO:0009765 ... Q9XF89 28604725
    378607 5mdx:s (5.3) BS11 CLA ? GO:0009765 ... Q9XF89 28604725
    378608 5mdx:s (5.3) BS12 CLA ? GO:0009765 ... Q9XF89 28604725
    378609 5mdx:s (5.3) BS13 CLA ? GO:0009765 ... Q9XF89 28604725
    378610 5mdx:y (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    378611 5mdx:y (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    378612 5mdx:y (5.3) BS03 CLA ? GO:0009765 ... P04778 28604725
    378613 5mdx:y (5.3) BS04 CLA ? GO:0009765 ... P04778 28604725
    378614 5mdx:y (5.3) BS05 CLA ? GO:0009765 ... P04778 28604725
    378615 5mdx:y (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    378616 5mdx:y (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    378617 5mdx:y (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    378618 5mdx:y (5.3) BS09 CHL ? GO:0009765 ... P04778 28604725
    378619 5mdx:y (5.3) BS10 CHL ? GO:0009765 ... P04778 28604725
    378620 5mdx:y (5.3) BS11 CLA ? GO:0009765 ... P04778 28604725
    378621 5mdx:y (5.3) BS12 CLA ? GO:0009765 ... P04778 28604725
    378622 5mdx:y (5.3) BS13 CLA ? GO:0009765 ... P04778 28604725
    378623 5mdx:y (5.3) BS14 CLA ? GO:0009765 ... P04778 28604725
    378624 5mdx:y (5.3) BS15 CLA ? GO:0009765 ... P04778 28604725
    378625 5mdy:6 (3.35) BS01 rna ? GO:0072344 ... P36675 27934701
    378626 5mdy:7 (3.35) BS01 rna ? GO:0000049 ... Q5SM01 27934701
    378627 5mdy:7 (3.35) BS02 rna ? GO:0000049 ... Q5SM01 27934701
    378628 5mdy:B (3.35) BS01 rna ? GO:0000027 ... P60422 27934701
    378629 5mdy:C (3.35) BS01 rna ? GO:0000027 ... P60438 27934701
    378630 5mdy:D (3.35) BS01 rna ? GO:0001070 ... P60723 27934701
    378631 5mdy:E (3.35) BS01 rna ? GO:0000027 ... P62399 27934701
    378632 5mdy:E (3.35) BS02 rna ? GO:0000027 ... P62399 27934701
    378633 5mdy:E (3.35) BS03 rna ? GO:0000027 ... P62399 27934701
    378634 5mdy:F (3.35) BS01 rna ? GO:0000027 ... P0AG55 27934701
    378635 5mdy:G (3.35) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    378636 5mdy:H (3.35) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    378637 5mdy:I (3.35) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    378638 5mdy:J (3.35) BS01 rna ? GO:0002181 ... P0AA10 27934701
    378639 5mdy:K (3.35) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    378640 5mdy:K (3.35) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    378641 5mdy:L (3.35) BS01 rna ? GO:0002181 ... P02413 27934701
    378642 5mdy:M (3.35) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    378643 5mdy:M (3.35) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    378644 5mdy:N (3.35) BS01 rna ? GO:0000027 ... P0AG44 27934701
    378645 5mdy:O (3.35) BS01 rna ? GO:0002181 ... P0C018 27934701
    378646 5mdy:O (3.35) BS02 rna ? GO:0002181 ... P0C018 27934701
    378647 5mdy:P (3.35) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    378648 5mdy:P (3.35) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    378649 5mdy:Q (3.35) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    378650 5mdy:R (3.35) BS01 rna ? GO:0002181 ... P0AG48 27934701
    378651 5mdy:S (3.35) BS01 rna ? GO:0002181 ... P61175 27934701
    378652 5mdy:T (3.35) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    378653 5mdy:U (3.35) BS01 rna ? GO:0000027 ... P60624 27934701
    378654 5mdy:U (3.35) BS02 MG ? GO:0000027 ... P60624 27934701
    378655 5mdy:V (3.35) BS01 rna ? GO:0000027 ... P68919 27934701
    378656 5mdy:V (3.35) BS02 rna ? GO:0000027 ... P68919 27934701
    378657 5mdy:W (3.35) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    378658 5mdy:W (3.35) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    378659 5mdy:X (3.35) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    378660 5mdy:Y (3.35) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    378661 5mdy:Z (3.35) BS01 rna ? GO:0000027 ... P0AG51 27934701
    378662 5mdy:Z (3.35) BS02 rna ? GO:0000027 ... P0AG51 27934701
    378663 5mdy:a (3.35) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    378664 5mdy:a (3.35) BS02 ZN ? GO:0002181 ... P0A7M9 27934701
    378665 5mdy:b (3.35) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    378666 5mdy:c (3.35) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    378667 5mdy:d (3.35) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    378668 5mdy:e (3.35) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    378669 5mdy:f (3.35) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    378670 5mdy:f (3.35) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    378671 5mdy:g (3.35) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    378672 5mdy:h (3.35) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    378673 5mdy:i (3.35) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    378674 5mdy:i (3.35) BS02 MG ? GO:0000028 ... P0A7V8 27934701
    378675 5mdy:j (3.35) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    378676 5mdy:k (3.35) BS01 rna ? GO:0002181 ... P02358 27934701
    378677 5mdy:l (3.35) BS01 rna ? GO:0000028 ... P02359 27934701
    378678 5mdy:m (3.35) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    378679 5mdy:n (3.35) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    378680 5mdy:n (3.35) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    378681 5mdy:o (3.35) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    378682 5mdy:p (3.35) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    378683 5mdy:q (3.35) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    378684 5mdy:r (3.35) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    378685 5mdy:r (3.35) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    378686 5mdy:r (3.35) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    378687 5mdy:s (3.35) BS01 rna ? GO:0000028 ... P0AG59 27934701
    378688 5mdy:t (3.35) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    378689 5mdy:t (3.35) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    378690 5mdy:u (3.35) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    378691 5mdy:v (3.35) BS01 rna ? GO:0000028 ... P0AG63 27934701
    378692 5mdy:w (3.35) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    378693 5mdy:x (3.35) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    378694 5mdy:y (3.35) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    378695 5mdy:z (3.35) BS01 rna ? GO:0000028 ... P68679 27934701
    378696 5mdz:B (3.1) BS01 rna ? GO:0000027 ... P60422 27934701
    378697 5mdz:C (3.1) BS01 rna ? GO:0000027 ... P60438 27934701
    378698 5mdz:D (3.1) BS01 rna ? GO:0001070 ... P60723 27934701
    378699 5mdz:E (3.1) BS01 rna ? GO:0000027 ... P62399 27934701
    378700 5mdz:E (3.1) BS02 rna ? GO:0000027 ... P62399 27934701
    378701 5mdz:E (3.1) BS03 rna ? GO:0000027 ... P62399 27934701
    378702 5mdz:F (3.1) BS01 rna ? GO:0000027 ... P0AG55 27934701
    378703 5mdz:G (3.1) BS01 rna ? GO:0002181 ... P0A7R1 27934701
    378704 5mdz:H (3.1) BS01 rna ? GO:0002181 ... P0A7J3 27934701
    378705 5mdz:I (3.1) BS01 rna ? GO:0000027 ... P0A7J7 27934701
    378706 5mdz:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 27934701
    378707 5mdz:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 27934701
    378708 5mdz:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 27934701
    378709 5mdz:L (3.1) BS01 rna ? GO:0002181 ... P02413 27934701
    378710 5mdz:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 27934701
    378711 5mdz:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 27934701
    378712 5mdz:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 27934701
    378713 5mdz:O (3.1) BS01 rna ? GO:0002181 ... P0C018 27934701
    378714 5mdz:O (3.1) BS02 rna ? GO:0002181 ... P0C018 27934701
    378715 5mdz:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 27934701
    378716 5mdz:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 27934701
    378717 5mdz:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 27934701
    378718 5mdz:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 27934701
    378719 5mdz:S (3.1) BS01 rna ? GO:0002181 ... P61175 27934701
    378720 5mdz:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 27934701
    378721 5mdz:U (3.1) BS01 rna ? GO:0000027 ... P60624 27934701
    378722 5mdz:U (3.1) BS02 MG ? GO:0000027 ... P60624 27934701
    378723 5mdz:V (3.1) BS01 rna ? GO:0000027 ... P68919 27934701
    378724 5mdz:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 27934701
    378725 5mdz:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 27934701
    378726 5mdz:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 27934701
    378727 5mdz:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 27934701
    378728 5mdz:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 27934701
    378729 5mdz:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 27934701
    378730 5mdz:a (3.1) BS01 rna ? GO:0002181 ... P0A7M9 27934701
    378731 5mdz:a (3.1) BS02 rna ? GO:0002181 ... P0A7M9 27934701
    378732 5mdz:a (3.1) BS03 ZN ? GO:0002181 ... P0A7M9 27934701
    378733 5mdz:b (3.1) BS01 rna ? GO:0000027 ... P0A7N4 27934701
    378734 5mdz:c (3.1) BS01 rna ? GO:0000027 ... P0A7N9 27934701
    378735 5mdz:d (3.1) BS01 rna ? GO:0002181 ... P0A7P5 27934701
    378736 5mdz:e (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 27934701
    378737 5mdz:f (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 27934701
    378738 5mdz:f (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 27934701
    378739 5mdz:g (3.1) BS01 rna ? GO:0000028 ... P0A7V0 27934701
    378740 5mdz:h (3.1) BS01 rna ? GO:0000028 ... P0A7V3 27934701
    378741 5mdz:i (3.1) BS01 rna ? GO:0000028 ... P0A7V8 27934701
    378742 5mdz:j (3.1) BS01 rna ? GO:0000028 ... P0A7W1 27934701
    378743 5mdz:k (3.1) BS01 rna ? GO:0002181 ... P02358 27934701
    378744 5mdz:l (3.1) BS01 rna ? GO:0000028 ... P02359 27934701
    378745 5mdz:m (3.1) BS01 rna ? GO:0000028 ... P0A7W7 27934701
    378746 5mdz:n (3.1) BS01 rna ? GO:0000049 ... P0A7X3 27934701
    378747 5mdz:n (3.1) BS02 rna ? GO:0000049 ... P0A7X3 27934701
    378748 5mdz:o (3.1) BS01 rna ? GO:0000049 ... P0A7R5 27934701
    378749 5mdz:p (3.1) BS01 rna ? GO:0002181 ... P0A7R9 27934701
    378750 5mdz:q (3.1) BS01 rna ? GO:0000049 ... P0A7S3 27934701
    378751 5mdz:r (3.1) BS01 rna ? GO:0000049 ... P0A7S9 27934701
    378752 5mdz:r (3.1) BS02 rna ? GO:0000049 ... P0A7S9 27934701
    378753 5mdz:r (3.1) BS03 MG ? GO:0000049 ... P0A7S9 27934701
    378754 5mdz:s (3.1) BS01 rna ? GO:0000028 ... P0AG59 27934701
    378755 5mdz:t (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 27934701
    378756 5mdz:t (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 27934701
    378757 5mdz:u (3.1) BS01 rna ? GO:0000028 ... P0A7T3 27934701
    378758 5mdz:v (3.1) BS01 rna ? GO:0000028 ... P0AG63 27934701
    378759 5mdz:w (3.1) BS01 rna ? GO:0002181 ... P0A7T7 27934701
    378760 5mdz:x (3.1) BS01 rna ? GO:0000028 ... P0A7U3 27934701
    378761 5mdz:y (3.1) BS01 rna ? GO:0000028 ... P0A7U7 27934701
    378762 5mdz:z (3.1) BS01 rna ? GO:0000028 ... P68679 27934701
    378763 5me0:B (13.5) BS01 rna ? GO:0000028 ... P0A7V0 27986852
    378764 5me0:C (13.5) BS01 rna ? GO:0000028 ... P0A7V3 27986852
    378765 5me0:D (13.5) BS01 rna ? GO:0000028 ... P0A7V8 27986852
    378766 5me0:E (13.5) BS01 rna ? GO:0000028 ... P0A7W1 27986852
    378767 5me0:F (13.5) BS01 rna ? GO:0002181 ... P02358 27986852
    378768 5me0:G (13.5) BS01 rna ? GO:0003723 ... P02359 27986852
    378769 5me0:H (13.5) BS01 rna ? GO:0000028 ... P0A7W7 27986852
    378770 5me0:I (13.5) BS01 rna ? GO:0000049 ... P0A7X3 27986852
    378771 5me0:J (13.5) BS01 rna ? GO:0000049 ... P0A7R5 27986852
    378772 5me0:K (13.5) BS01 rna ? GO:0002181 ... P0A7R9 27986852
    378773 5me0:L (13.5) BS01 rna ? GO:0000049 ... P0A7S3 27986852
    378774 5me0:M (13.5) BS01 rna ? GO:0000049 ... P0A7S9 27986852
    378775 5me0:N (13.5) BS01 rna ? GO:0000028 ... P0AG59 27986852
    378776 5me0:O (13.5) BS01 rna ? GO:0000028 ... P0ADZ4 27986852
    378777 5me0:P (13.5) BS01 rna N/A GO:0003735 ... N/A 27986852
    378778 5me0:Q (13.5) BS01 rna ? GO:0000028 ... P0AG63 27986852
    378779 5me0:R (13.5) BS01 rna ? GO:0002181 ... P0A7T7 27986852
    378780 5me0:S (13.5) BS01 rna ? GO:0000028 ... P0A7U3 27986852
    378781 5me0:T (13.5) BS01 rna ? GO:0000028 ... P0A7U7 27986852
    378782 5me0:U (13.5) BS01 rna ? GO:0000028 ... P68679 27986852
    378783 5me0:V (13.5) BS01 rna ? GO:0003723 ... Q5SHR1 27986852
    378784 5me0:W (13.5) BS01 rna ? GO:0003743 ... P0A705 27986852
    378785 5me0:W (13.5) BS02 rna ? GO:0003743 ... P0A705 27986852
    378786 5me0:W (13.5) BS03 FME ? GO:0003743 ... P0A705 27986852
    378787 5me0:Y (13.5) BS01 rna ? GO:0003743 ... P03000 27986852
    378788 5me0:Y (13.5) BS02 rna ? GO:0003743 ... P03000 27986852
    378789 5me0:Z (13.5) BS01 rna ? GO:0003743 ... P0A707 27986852
    378790 5me0:Z (13.5) BS02 rna ? GO:0003743 ... P0A707 27986852
    378791 5me1:B (13.5) BS01 rna ? GO:0000028 ... P0A7V0 27986852
    378792 5me1:C (13.5) BS01 rna ? GO:0000028 ... P0A7V3 27986852
    378793 5me1:D (13.5) BS01 rna ? GO:0000028 ... P0A7V8 27986852
    378794 5me1:E (13.5) BS01 rna ? GO:0000028 ... P0A7W1 27986852
    378795 5me1:F (13.5) BS01 rna ? GO:0002181 ... P02358 27986852
    378796 5me1:G (13.5) BS01 rna ? GO:0003723 ... P02359 27986852
    378797 5me1:H (13.5) BS01 rna ? GO:0000028 ... P0A7W7 27986852
    378798 5me1:I (13.5) BS01 rna ? GO:0000049 ... P0A7X3 27986852
    378799 5me1:J (13.5) BS01 rna ? GO:0000049 ... P0A7R5 27986852
    378800 5me1:K (13.5) BS01 rna ? GO:0002181 ... P0A7R9 27986852

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).