SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    378801 5me1:L (13.5) BS01 rna ? GO:0000049 ... P0A7S3 27986852
    378802 5me1:M (13.5) BS01 rna ? GO:0000049 ... P0A7S9 27986852
    378803 5me1:N (13.5) BS01 rna ? GO:0000028 ... P0AG59 27986852
    378804 5me1:O (13.5) BS01 rna ? GO:0000028 ... P0ADZ4 27986852
    378805 5me1:P (13.5) BS01 rna ? GO:0003735 ... N/A 27986852
    378806 5me1:Q (13.5) BS01 rna ? GO:0000028 ... P0AG63 27986852
    378807 5me1:R (13.5) BS01 rna ? GO:0002181 ... P0A7T7 27986852
    378808 5me1:S (13.5) BS01 rna ? GO:0000028 ... P0A7U3 27986852
    378809 5me1:T (13.5) BS01 rna ? GO:0000028 ... P0A7U7 27986852
    378810 5me1:U (13.5) BS01 rna ? GO:0000028 ... P68679 27986852
    378811 5me1:V (13.5) BS01 rna ? GO:0003723 ... Q5SHR1 27986852
    378812 5me1:W (13.5) BS01 rna ? GO:0003743 ... P0A705 27986852
    378813 5me1:W (13.5) BS02 rna ? GO:0003743 ... P0A705 27986852
    378814 5me1:W (13.5) BS03 FME ? GO:0003743 ... P0A705 27986852
    378815 5me1:Y (13.5) BS01 rna ? GO:0003743 ... P03000 27986852
    378816 5me1:Y (13.5) BS02 rna ? GO:0003743 ... P03000 27986852
    378817 5me1:Z (13.5) BS01 rna ? GO:0003743 ... P0A707 27986852
    378818 5me1:Z (13.5) BS02 rna ? GO:0003743 ... P0A707 27986852
    378819 5me4:A (1.52) BS01 HP4 ? GO:0043190 ... O69061 29170493
    378820 5me4:A (1.52) BS02 HP4 ? GO:0043190 ... O69061 29170493
    378821 5me6:A (2.9) BS01 M7G ? GO:0003723 ... N/A 28522457
    378822 5me6:D (2.9) BS01 M7G ? GO:0003723 ... N/A 28522457
    378823 5med:A (1.8) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378824 5med:A (1.8) BS02 POL 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378825 5med:A (1.8) BS03 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378826 5med:B (1.8) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378827 5med:B (1.8) BS02 POL 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378828 5med:B (1.8) BS03 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378829 5med:B (1.8) BS04 PDO 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378830 5mee:A (2.5) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378831 5mee:B (2.5) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378832 5mef:A (2.357) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378833 5mef:B (2.357) BS01 FE 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378834 5meg:A (2.0) BS01 MN 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378835 5meg:B (2.0) BS01 MN 1.13.11.33 GO:0016491 ... B7JX99 28522865
    378836 5meh:A (0.95) BS01 DMJ 3.2.1.113 GO:0004571 ... B0SWV2 28256791 MOAD: Kd=481nM
    378837 5mei:0 (3.5) BS01 rna ? GO:0002181 ... P0CX23 28457705
    378838 5mei:0 (3.5) BS02 rna ? GO:0002181 ... P0CX23 28457705
    378839 5mei:2 (3.5) BS01 rna ? GO:0002181 ... Q02753 28457705
    378840 5mei:2 (3.5) BS02 rna ? GO:0002181 ... Q02753 28457705
    378841 5mei:2 (3.5) BS03 OHX ? GO:0002181 ... Q02753 28457705
    378842 5mei:5 (3.5) BS01 rna ? GO:0003735 ... P05749 28457705
    378843 5mei:7 (3.5) BS01 rna ? GO:0003735 ... P04449 28457705
    378844 5mei:7 (3.5) BS02 rna ? GO:0003735 ... P04449 28457705
    378845 5mei:8 (3.5) BS01 rna ? GO:0003735 ... P04456 28457705
    378846 5mei:8 (3.5) BS02 rna ? GO:0003735 ... P04456 28457705
    378847 5mei:8 (3.5) BS03 MG ? GO:0003735 ... P04456 28457705
    378848 5mei:9 (3.5) BS01 rna ? GO:0002181 ... P05743 28457705
    378849 5mei:9 (3.5) BS02 rna ? GO:0002181 ... P05743 28457705
    378850 5mei:AA (3.5) BS01 rna ? GO:0002181 ... P0C2H6 28457705
    378851 5mei:AA (3.5) BS02 OHX ? GO:0002181 ... P0C2H6 28457705
    378852 5mei:AB (3.5) BS01 rna ? GO:0002181 ... P02406 28457705
    378853 5mei:AB (3.5) BS02 OHX ? GO:0002181 ... P02406 28457705
    378854 5mei:AB (3.5) BS03 MG ? GO:0002181 ... P02406 28457705
    378855 5mei:AC (3.5) BS01 rna ? GO:0002181 ... P05747 28457705
    378856 5mei:AC (3.5) BS02 OHX ? GO:0002181 ... P05747 28457705
    378857 5mei:AD (3.5) BS01 rna ? GO:0002181 ... P14120 28457705
    378858 5mei:AE (3.5) BS01 rna ? GO:0002181 ... P0C2H8 28457705
    378859 5mei:AE (3.5) BS02 OHX ? GO:0002181 ... P0C2H8 28457705
    378860 5mei:AF (3.5) BS01 rna ? GO:0002181 ... P38061 28457705
    378861 5mei:AF (3.5) BS02 OHX ? GO:0002181 ... P38061 28457705
    378862 5mei:AF (3.5) BS03 MG ? GO:0002181 ... P38061 28457705
    378863 5mei:AG (3.5) BS01 rna ? GO:0000027 ... P05744 28457705
    378864 5mei:AG (3.5) BS02 OHX ? GO:0000027 ... P05744 28457705
    378865 5mei:AH (3.5) BS01 rna ? GO:0002181 ... P87262 28457705
    378866 5mei:AI (3.5) BS01 rna ? GO:0000463 ... P0CX84 28457705
    378867 5mei:AI (3.5) BS02 rna ? GO:0000463 ... P0CX84 28457705
    378868 5mei:AJ (3.5) BS01 rna ? GO:0002181 ... P05745 28457705
    378869 5mei:AK (3.5) BS01 rna ? GO:0000448 ... P49166 28457705
    378870 5mei:AK (3.5) BS02 rna ? GO:0000448 ... P49166 28457705
    378871 5mei:AK (3.5) BS03 OHX ? GO:0000448 ... P49166 28457705
    378872 5mei:AK (3.5) BS04 ZN ? GO:0000448 ... P49166 28457705
    378873 5mei:AK (3.5) BS05 OHX ? GO:0000448 ... P49166 28457705
    378874 5mei:AL (3.5) BS01 rna ? GO:0002181 ... P49167 28457705
    378875 5mei:AM (3.5) BS01 rna ? GO:0002181 ... P04650 28457705
    378876 5mei:AM (3.5) BS02 rna ? GO:0002181 ... P04650 28457705
    378877 5mei:AM (3.5) BS03 OHX ? GO:0002181 ... P04650 28457705
    378878 5mei:AN (3.5) BS01 rna ? GO:0003735 ... P0CH08 28457705
    378879 5mei:AN (3.5) BS02 ZN ? GO:0003735 ... P0CH08 28457705
    378880 5mei:AP (3.5) BS01 rna ? GO:0002181 ... P0CX27 28457705
    378881 5mei:AP (3.5) BS02 ZN ? GO:0002181 ... P0CX27 28457705
    378882 5mei:AP (3.5) BS03 OHX ? GO:0002181 ... P0CX27 28457705
    378883 5mei:AQ (3.5) BS01 rna ? GO:0002181 ... P0CX25 28457705
    378884 5mei:AQ (3.5) BS02 ZN ? GO:0002181 ... P0CX25 28457705
    378885 5mei:B (3.5) BS01 rna ? GO:0003735 ... P32905 28457705
    378886 5mei:C (3.5) BS01 rna ? GO:0003735 ... P33442 28457705
    378887 5mei:C (3.5) BS02 OHX ? GO:0003735 ... P33442 28457705
    378888 5mei:CD (3.5) BS01 rna ? GO:0002181 ... P0CX45 28457705
    378889 5mei:CD (3.5) BS02 rna ? GO:0002181 ... P0CX45 28457705
    378890 5mei:CE (3.5) BS01 rna ? GO:0000027 ... P14126 28457705
    378891 5mei:CE (3.5) BS02 OHX ? GO:0000027 ... P14126 28457705
    378892 5mei:CE (3.5) BS03 OHX ? GO:0000027 ... P14126 28457705
    378893 5mei:CE (3.5) BS04 MG ? GO:0000027 ... P14126 28457705
    378894 5mei:CF (3.5) BS01 rna ? GO:0002181 ... P10664 28457705
    378895 5mei:CF (3.5) BS02 rna ? GO:0002181 ... P10664 28457705
    378896 5mei:CF (3.5) BS03 OHX ? GO:0002181 ... P10664 28457705
    378897 5mei:CG (3.5) BS01 rna ? GO:0000027 ... P26321 28457705
    378898 5mei:CG (3.5) BS02 rna ? GO:0000027 ... P26321 28457705
    378899 5mei:CG (3.5) BS03 MG ? GO:0000027 ... P26321 28457705
    378900 5mei:CG (3.5) BS04 OHX ? GO:0000027 ... P26321 28457705
    378901 5mei:CG (3.5) BS05 OHX ? GO:0000027 ... P26321 28457705
    378902 5mei:CG (3.5) BS06 OHX ? GO:0000027 ... P26321 28457705
    378903 5mei:CH (3.5) BS01 rna ? GO:0000027 ... Q02326 28457705
    378904 5mei:CI (3.5) BS01 rna ? GO:0000463 ... P05737 28457705
    378905 5mei:CI (3.5) BS02 rna ? GO:0000463 ... P05737 28457705
    378906 5mei:CI (3.5) BS03 OHX ? GO:0000463 ... P05737 28457705
    378907 5mei:CJ (3.5) BS01 rna ? GO:0000470 ... P17076 28457705
    378908 5mei:CJ (3.5) BS02 rna ? GO:0000470 ... P17076 28457705
    378909 5mei:CK (3.5) BS01 rna ? GO:0002181 ... P05738 28457705
    378910 5mei:CK (3.5) BS02 OHX ? GO:0002181 ... P05738 28457705
    378911 5mei:CL (3.5) BS01 rna ? GO:0000027 ... P41805 28457705
    378912 5mei:CL (3.5) BS02 rna ? GO:0000027 ... P41805 28457705
    378913 5mei:CL (3.5) BS03 OHX ? GO:0000027 ... P41805 28457705
    378914 5mei:CL (3.5) BS04 OHX ? GO:0000027 ... P41805 28457705
    378915 5mei:CM (3.5) BS01 rna ? GO:0000027 ... Q3E757 28457705
    378916 5mei:CM (3.5) BS02 rna ? GO:0000027 ... Q3E757 28457705
    378917 5mei:CN (3.5) BS01 rna ? GO:0002181 ... Q12690 28457705
    378918 5mei:CN (3.5) BS02 rna ? GO:0002181 ... Q12690 28457705
    378919 5mei:CO (3.5) BS01 rna ? GO:0000027 ... P36105 28457705
    378920 5mei:CP (3.5) BS01 rna ? GO:0002181 ... P05748 28457705
    378921 5mei:CP (3.5) BS02 rna ? GO:0002181 ... P05748 28457705
    378922 5mei:CP (3.5) BS03 OHX ? GO:0002181 ... P05748 28457705
    378923 5mei:CQ (3.5) BS01 rna ? GO:0000470 ... P26784 28457705
    378924 5mei:CQ (3.5) BS02 MG ? GO:0000470 ... P26784 28457705
    378925 5mei:CR (3.5) BS01 rna ? GO:0000448 ... P05740 28457705
    378926 5mei:CR (3.5) BS02 rna ? GO:0000448 ... P05740 28457705
    378927 5mei:CS (3.5) BS01 rna ? GO:0002181 ... P0CX49 28457705
    378928 5mei:CT (3.5) BS01 rna ? GO:0002181 ... P0CX82 28457705
    378929 5mei:CT (3.5) BS02 rna ? GO:0002181 ... P0CX82 28457705
    378930 5mei:CT (3.5) BS03 OHX ? GO:0002181 ... P0CX82 28457705
    378931 5mei:CU (3.5) BS01 rna ? GO:0002181 ... P0CX23 28457705
    378932 5mei:CU (3.5) BS02 rna ? GO:0002181 ... P0CX23 28457705
    378933 5mei:CV (3.5) BS01 rna ? GO:0002181 ... Q02753 28457705
    378934 5mei:CV (3.5) BS02 rna ? GO:0002181 ... Q02753 28457705
    378935 5mei:CV (3.5) BS03 MG ? GO:0002181 ... Q02753 28457705
    378936 5mei:CV (3.5) BS04 OHX ? GO:0002181 ... Q02753 28457705
    378937 5mei:CW (3.5) BS01 rna ? GO:0003735 ... P05749 28457705
    378938 5mei:CX (3.5) BS01 rna ? GO:0002181 ... P0CX41 28457705
    378939 5mei:CX (3.5) BS02 rna ? GO:0002181 ... P0CX41 28457705
    378940 5mei:CX (3.5) BS03 OHX ? GO:0002181 ... P0CX41 28457705
    378941 5mei:CX (3.5) BS04 OHX ? GO:0002181 ... P0CX41 28457705
    378942 5mei:CY (3.5) BS01 rna ? GO:0003735 ... P04449 28457705
    378943 5mei:CZ (3.5) BS01 rna ? GO:0003735 ... P04456 28457705
    378944 5mei:CZ (3.5) BS02 rna ? GO:0003735 ... P04456 28457705
    378945 5mei:D (3.5) BS01 rna ? GO:0003723 ... P25443 28457705
    378946 5mei:DA (3.5) BS01 rna ? GO:0002181 ... P05743 28457705
    378947 5mei:DA (3.5) BS02 rna ? GO:0002181 ... P05743 28457705
    378948 5mei:DA (3.5) BS03 OHX ? GO:0002181 ... P05743 28457705
    378949 5mei:DB (3.5) BS01 rna ? GO:0002181 ... P0C2H6 28457705
    378950 5mei:DC (3.5) BS01 rna ? GO:0002181 ... P02406 28457705
    378951 5mei:DC (3.5) BS02 OHX ? GO:0002181 ... P02406 28457705
    378952 5mei:DD (3.5) BS01 rna ? GO:0002181 ... P05747 28457705
    378953 5mei:DD (3.5) BS02 OHX ? GO:0002181 ... P05747 28457705
    378954 5mei:DE (3.5) BS01 rna ? GO:0002181 ... P14120 28457705
    378955 5mei:DF (3.5) BS01 rna ? GO:0002181 ... P0C2H8 28457705
    378956 5mei:DG (3.5) BS01 rna ? GO:0002181 ... P38061 28457705
    378957 5mei:DG (3.5) BS02 OHX ? GO:0002181 ... P38061 28457705
    378958 5mei:DH (3.5) BS01 rna ? GO:0000027 ... P05744 28457705
    378959 5mei:DH (3.5) BS02 OHX ? GO:0000027 ... P05744 28457705
    378960 5mei:DH (3.5) BS03 MG ? GO:0000027 ... P05744 28457705
    378961 5mei:DI (3.5) BS01 rna ? GO:0002181 ... P87262 28457705
    378962 5mei:DI (3.5) BS02 OHX ? GO:0002181 ... P87262 28457705
    378963 5mei:DJ (3.5) BS01 rna ? GO:0000463 ... P0CX84 28457705
    378964 5mei:DJ (3.5) BS02 rna ? GO:0000463 ... P0CX84 28457705
    378965 5mei:DK (3.5) BS01 rna ? GO:0002181 ... P05745 28457705
    378966 5mei:DL (3.5) BS01 rna ? GO:0000448 ... P49166 28457705
    378967 5mei:DL (3.5) BS02 rna ? GO:0000448 ... P49166 28457705
    378968 5mei:DL (3.5) BS03 OHX ? GO:0000448 ... P49166 28457705
    378969 5mei:DL (3.5) BS04 OHX ? GO:0000448 ... P49166 28457705
    378970 5mei:DL (3.5) BS05 ZN ? GO:0000448 ... P49166 28457705
    378971 5mei:DM (3.5) BS01 rna ? GO:0002181 ... P49167 28457705
    378972 5mei:DN (3.5) BS01 rna ? GO:0002181 ... P04650 28457705
    378973 5mei:DN (3.5) BS02 rna ? GO:0002181 ... P04650 28457705
    378974 5mei:DO (3.5) BS01 rna ? GO:0003735 ... P0CH08 28457705
    378975 5mei:DO (3.5) BS02 MG ? GO:0003735 ... P0CH08 28457705
    378976 5mei:DO (3.5) BS03 ZN ? GO:0003735 ... P0CH08 28457705
    378977 5mei:DQ (3.5) BS01 rna ? GO:0002181 ... P0CX27 28457705
    378978 5mei:DQ (3.5) BS02 OHX ? GO:0002181 ... P0CX27 28457705
    378979 5mei:DQ (3.5) BS03 ZN ? GO:0002181 ... P0CX27 28457705
    378980 5mei:DR (3.5) BS01 rna ? GO:0002181 ... P0CX25 28457705
    378981 5mei:DR (3.5) BS02 rna ? GO:0002181 ... P0CX25 28457705
    378982 5mei:DR (3.5) BS03 ZN ? GO:0002181 ... P0CX25 28457705
    378983 5mei:E (3.5) BS01 rna ? GO:0000054 ... P05750 28457705
    378984 5mei:F (3.5) BS01 rna ? GO:0002181 ... P0CX35 28457705
    378985 5mei:F (3.5) BS02 MG ? GO:0002181 ... P0CX35 28457705
    378986 5mei:G (3.5) BS01 rna ? GO:0000028 ... P26783 28457705
    378987 5mei:H (3.5) BS01 rna ? GO:0000462 ... P0CX37 28457705
    378988 5mei:I (3.5) BS01 rna ? GO:0002181 ... P26786 28457705
    378989 5mei:J (3.5) BS01 rna ? GO:0000462 ... P0CX39 28457705
    378990 5mei:J (3.5) BS02 rna ? GO:0000462 ... P0CX39 28457705
    378991 5mei:K (3.5) BS01 rna ? GO:0000462 ... O13516 28457705
    378992 5mei:L (3.5) BS01 rna ? GO:0000054 ... Q08745 28457705
    378993 5mei:M (3.5) BS01 rna ? GO:0000028 ... P0CX47 28457705
    378994 5mei:M (3.5) BS02 OHX ? GO:0000028 ... P0CX47 28457705
    378995 5mei:N (3.5) BS01 rna ? GO:0003735 ... P48589 28457705
    378996 5mei:O (3.5) BS01 rna ? GO:0000462 ... P05756 28457705
    378997 5mei:O (3.5) BS02 rna ? GO:0000462 ... P05756 28457705
    378998 5mei:O (3.5) BS03 OHX ? GO:0000462 ... P05756 28457705
    378999 5mei:P (3.5) BS01 rna ? GO:0000028 ... P39516 28457705
    379000 5mei:Q (3.5) BS01 rna ? GO:0000028 ... Q01855 28457705

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).