SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 1axe:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3602 1axe:B (2.0) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9371755
    3603 1axg:A (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3604 1axg:A (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3605 1axg:A (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9371755
    3606 1axg:B (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3607 1axg:B (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3608 1axg:B (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9371755
    3609 1axg:C (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3610 1axg:C (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3611 1axg:C (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9371755
    3612 1axg:D (2.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3613 1axg:D (2.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9371755
    3614 1axg:D (2.5) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 9371755
    3615 1axj:A (-1.00) BS01 FMN ? GO:0005737 ... Q46604 9406543
    3616 1axk:A (2.1) BS01 CA 3.2.1.73
    3.2.1.8
    GO:0004553 ... P18429
    P23904
    9618460
    3617 1axk:B (2.1) BS01 CA 3.2.1.73
    3.2.1.8
    GO:0004553 ... P18429
    P23904
    9618460
    3618 1axm:A (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    3619 1axm:A (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    3620 1axm:B (3.0) BS01 SGN ? GO:0008083 ... P05230 9655399
    3621 1axm:B (3.0) BS02 IDS ? GO:0008083 ... P05230 9655399
    3622 1axm:B (3.0) BS03 SGN ? GO:0008083 ... P05230 9655399
    3623 1axm:C (3.0) BS01 SGN ? GO:0008083 ... P05230 9655399
    3624 1axm:C (3.0) BS02 IDS ? GO:0008083 ... P05230 9655399
    3625 1axm:C (3.0) BS03 SGN ? GO:0008083 ... P05230 9655399
    3626 1axm:D (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    3627 1axm:E (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    3628 1axm:E (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    3629 1axm:F (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    3630 1axm:F (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    3631 1axn:A (1.78) BS01 CA ? GO:0001786 ... P12429 8639653
    3632 1axn:A (1.78) BS02 CA ? GO:0001786 ... P12429 8639653
    3633 1axn:A (1.78) BS03 CA ? GO:0001786 ... P12429 8639653
    3634 1axn:A (1.78) BS04 CA ? GO:0001786 ... P12429 8639653
    3635 1axn:A (1.78) BS05 CA ? GO:0001786 ... P12429 8639653
    3636 1axq:A (2.1) BS01 SF4 ? GO:0009055 ... P00214 N/A
    3637 1axq:A (2.1) BS02 F3S ? GO:0009055 ... P00214 N/A
    3638 1axr:A (2.3) BS01 PLP 2.4.1.1 GO:0004645 ... P00489 N/A
    3639 1axr:A (2.3) BS02 HTP 2.4.1.1 GO:0004645 ... P00489 N/A MOAD: Ki=540uM
    3640 1axs:A (2.6) BS01 HOP ? GO:0005576 ... Q7Z3Y4 9305839
    3641 1axs:B (2.6) BS01 HOP ? N/A P01857 9305839
    3642 1axs:H (2.6) BS01 HOP ? N/A P01857 9305839
    3643 1axs:L (2.6) BS01 HOP ? GO:0005576 ... Q7Z3Y4 9305839
    3644 1axw:A (1.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 N/A
    3645 1axw:A (1.7) BS02 MTX 2.1.1.45 GO:0000287 ... P0A884 N/A BindingDB: IC50=90000nM
    3646 1axw:A (1.7) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 N/A
    3647 1axw:B (1.7) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 N/A
    3648 1axw:B (1.7) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 N/A
    3649 1axw:B (1.7) BS03 MTX 2.1.1.45 GO:0000287 ... P0A884 N/A BindingDB: IC50=90000nM
    3650 1axx:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    3651 1axy:A (1.95) BS01 MN ? GO:0030246 ... P16404 9545381
    3652 1axy:A (1.95) BS02 CA ? GO:0030246 ... P16404 9545381
    3653 1axz:A (1.95) BS01 GLA ? GO:0030246 ... P16404 9545381 MOAD: Ka=1570M^-1
    3654 1axz:A (1.95) BS02 GAL ? GO:0030246 ... P16404 9545381 MOAD: Ka=1570M^-1
    3655 1axz:A (1.95) BS03 MN ? GO:0030246 ... P16404 9545381
    3656 1axz:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    3657 1ay0:A (2.6) BS01 CA 2.2.1.1 GO:0004802 ... P23254 9398292
    3658 1ay0:A (2.6) BS02 TPP 2.2.1.1 GO:0004802 ... P23254 9398292
    3659 1ay0:A (2.6) BS03 TPP 2.2.1.1 GO:0004802 ... P23254 9398292
    3660 1ay0:B (2.6) BS01 TPP 2.2.1.1 GO:0004802 ... P23254 9398292
    3661 1ay0:B (2.6) BS02 CA 2.2.1.1 GO:0004802 ... P23254 9398292
    3662 1ay0:B (2.6) BS03 TPP 2.2.1.1 GO:0004802 ... P23254 9398292
    3663 1ay4:A (2.33) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3664 1ay4:B (2.33) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3665 1ay5:A (2.5) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3666 1ay5:B (2.5) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3667 1ay6:H (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8367461
    3668 1ay6:H (1.8) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8367461
    3669 1ay6:H (1.8) BS03 1ZV 3.4.21.5 GO:0004252 ... P00734 8367461
    3670 1ay8:A (2.3) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3671 1ay8:B (2.3) BS01 PLP 2.6.1.57 GO:0004069 ... P95468 9665848
    3672 1ay8:B (2.3) BS02 HCI 2.6.1.57 GO:0004069 ... P95468 9665848
    3673 1aya:A (2.05) BS01 peptide 3.1.3.48 N/A P35235 7521735
    3674 1aya:B (2.05) BS01 peptide 3.1.3.48 N/A P35235 7521735
    3675 1ayb:A (3.0) BS01 peptide 3.1.3.48 N/A P35235 7521735
    3676 1ayc:A (2.3) BS01 peptide 3.1.3.48 N/A P35235 7521735
    3677 1aye:A (1.8) BS01 ZN 3.4.17.15 GO:0004180 ... P48052 9384570
    3678 1ayf:A (1.85) BS01 FES ? GO:0051536 ... P00257 9551550
    3679 1ayf:B (1.85) BS01 FES ? GO:0051536 ... P00257 9551550
    3680 1ayg:A (-1.00) BS01 HEC ? GO:0005506 ... P15452 9657676
    3681 1ayk:A (-1.00) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    3682 1ayk:A (-1.00) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 9484219
    3683 1ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    3684 1ayl:A (1.8) BS01 OXL 4.1.1.49 GO:0000287 ... P22259 8599762
    3685 1ayl:A (1.8) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 8599762
    3686 1aym:1 (2.15) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A Q82122 9083115
    3687 1aym:3 (2.15) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 9083115
    3688 1ayn:1 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A Q82122 7915182
    3689 1ayn:3 (2.9) BS01 peptide 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... Q82122 7915182
    3690 1ayo:B (1.9) BS01 CA ? GO:0005576 ... Q7SIH1 9634697
    3691 1ayp:A (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3692 1ayp:A (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3693 1ayp:A (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3694 1ayp:B (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3695 1ayp:B (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3696 1ayp:B (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3697 1ayp:C (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3698 1ayp:C (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3699 1ayp:C (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3700 1ayp:D (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3701 1ayp:D (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3702 1ayp:D (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3703 1ayp:E (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3704 1ayp:E (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3705 1ayp:E (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3706 1ayp:F (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3707 1ayp:F (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    3708 1ayp:F (2.57) BS03 INB 3.1.1.4 GO:0004623 ... P14555 15299314
    3709 1ayu:A (2.2) BS01 INA 3.4.22.38 GO:0006508 ... P43235 9405598 BindingDB: Ki=0.7nM
    3710 1ayv:A (2.3) BS01 IN6 3.4.22.38 GO:0006508 ... P43235 9405598 BindingDB: Ki=10.0nM
    3711 1ayw:A (2.4) BS01 IN3 3.4.22.38 GO:0006508 ... P43235 9405598 BindingDB: Ki=27nM
    3712 1az0:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    3713 1az0:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    3714 1az0:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    3715 1az0:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    3716 1az0:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9367757
    3717 1az0:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    3718 1az1:A (1.8) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 9405046
    3719 1az1:A (1.8) BS02 ALR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 9405046 BindingDB: IC50=79000nM, Ki=2000nM
    3720 1az1:A (1.8) BS03 ALR 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 9405046 BindingDB: IC50=79000nM, Ki=2000nM
    3721 1az2:A (2.9) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54
    GO:0001523 ... P15121 9405046
    3722 1az8:A (1.8) BS01 IN4 3.4.21.4 GO:0004175 ... P00760 N/A
    3723 1azb:A (2.2) BS01 CU ? GO:0005507 ... P00280 15299522
    3724 1azb:B (2.2) BS01 CU ? GO:0005507 ... P00280 15299522
    3725 1azc:A (1.8) BS01 CU ? GO:0005507 ... P00280 15299522
    3726 1azc:B (1.8) BS01 CU ? GO:0005507 ... P00280 15299522
    3727 1azd:A (3.0) BS01 CA ? GO:0030246 ... P55915 9094437
    3728 1azd:A (3.0) BS02 MN ? GO:0030246 ... P55915 9094437
    3729 1azd:B (3.0) BS01 CA ? GO:0030246 ... P55915 9094437
    3730 1azd:B (3.0) BS02 MN ? GO:0030246 ... P55915 9094437
    3731 1azd:C (3.0) BS01 CA ? GO:0030246 ... P55915 9094437
    3732 1azd:C (3.0) BS02 MN ? GO:0030246 ... P55915 9094437
    3733 1azd:D (3.0) BS01 CA ? GO:0030246 ... P55915 9094437
    3734 1azd:D (3.0) BS02 MN ? GO:0030246 ... P55915 9094437
    3735 1aze:A (-1.00) BS01 peptide ? N/A P62993 10395825
    3736 1azf:A (1.8) BS01 BR 3.2.1.17 GO:0003796 ... P00698 9757106
    3737 1azg:B (-1.00) BS01 peptide 2.7.10.2 N/A P06241 8961927
    3738 1azi:A (2.0) BS01 AZI 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 9576852
    3739 1azi:A (2.0) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0003009 ... P68082 9576852
    3740 1azl:A (1.8) BS01 FMN ? GO:0009055 ... P00323 9622492 MOAD: Kd=2.4nM
    3741 1azm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 7932756
    3742 1azm:A (2.0) BS02 AZM 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 7932756 BindingDB: Ki=250nM, Kd=1400nM, IC50=5.8nM
    3743 1azn:A (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    3744 1azn:B (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    3745 1azn:C (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    3746 1azn:D (2.6) BS01 CU ? GO:0005507 ... P00282 15299318
    3747 1azp:A (1.6) BS01 dna ? GO:0003677 ... P13123 9515968
    3748 1azp:A (1.6) BS02 dna ? GO:0003677 ... P13123 9515968
    3749 1azq:A (1.94) BS01 dna ? GO:0003677 ... P13123 9515968
    3750 1azq:A (1.94) BS02 dna ? GO:0003677 ... P13123 9515968
    3751 1azr:A (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    3752 1azr:B (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    3753 1azr:C (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    3754 1azr:D (2.4) BS01 CU ? GO:0005507 ... P00282 15299504
    3755 1azs:A (2.3) BS01 FKP 4.6.1.1 GO:0009190 ... P30803 9417641
    3756 1azs:C (2.3) BS01 MG ? GO:0003924 ... P04896 9417641
    3757 1azs:C (2.3) BS02 GSP ? GO:0003924 ... P04896 9417641
    3758 1azt:A (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    3759 1azt:A (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    3760 1azt:B (2.3) BS01 MG ? GO:0003924 ... P04896 9395396
    3761 1azt:B (2.3) BS02 GSP ? GO:0003924 ... P04896 9395396
    3762 1azu:A (2.7) BS01 CU ? GO:0005507 ... P00282 N/A
    3763 1azv:A (1.9) BS01 CU 1.15.1.1 GO:0000303 ... P00441 9541385
    3764 1azv:A (1.9) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 9541385
    3765 1azv:B (1.9) BS01 CU 1.15.1.1 GO:0000303 ... P00441 9541385
    3766 1azv:B (1.9) BS02 ZN 1.15.1.1 GO:0000303 ... P00441 9541385
    3767 1azx:I (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    3768 1azx:I (2.9) BS02 GU6 ? GO:0002020 ... P01008 9405673
    3769 1azx:I (2.9) BS03 GU1 ? GO:0002020 ... P01008 9405673
    3770 1azx:I (2.9) BS04 Z9H ? GO:0002020 ... P01008 9405673
    3771 1azx:L (2.9) BS01 Z9L ? GO:0002020 ... P01008 9405673
    3772 1azx:L (2.9) BS02 Z9K ? GO:0002020 ... P01008 9405673
    3773 1azx:L (2.9) BS03 GU6 ? GO:0002020 ... P01008 9405673
    3774 1azx:L (2.9) BS04 GU1 ? GO:0002020 ... P01008 9405673
    3775 1azx:L (2.9) BS05 Z9H ? GO:0002020 ... P01008 9405673
    3776 1b01:A (2.56) BS01 dna ? GO:0006355 ... P13920 9857196
    3777 1b01:A (2.56) BS02 dna ? GO:0006355 ... P13920 9857196
    3778 1b01:B (2.56) BS01 dna ? GO:0006355 ... P13920 9857196
    3779 1b01:B (2.56) BS02 dna ? GO:0006355 ... P13920 9857196
    3780 1b02:A (2.5) BS01 UFP 2.1.1.45 GO:0004799 ... P0CI79 10091656
    3781 1b02:A (2.5) BS02 C2F 2.1.1.45 GO:0004799 ... P0CI79 10091656
    3782 1b05:A (2.0) BS01 peptide ? GO:0015833 ... P06202 10438628
    3783 1b06:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3784 1b06:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3785 1b06:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3786 1b06:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3787 1b06:E (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3788 1b06:F (2.2) BS01 FE 1.15.1.1 GO:0004784 ... Q08713 9878438
    3789 1b07:A (2.5) BS01 peptide ? N/A Q64010 9851931
    3790 1b08:A (2.3) BS01 CA ? N/A P35247 10368295
    3791 1b08:A (2.3) BS02 CA ? N/A P35247 10368295
    3792 1b08:A (2.3) BS03 CA ? N/A P35247 10368295
    3793 1b08:B (2.3) BS01 CA ? N/A P35247 10368295
    3794 1b08:B (2.3) BS02 CA ? N/A P35247 10368295
    3795 1b08:B (2.3) BS03 CA ? N/A P35247 10368295
    3796 1b08:C (2.3) BS01 CA ? N/A P35247 10368295
    3797 1b08:C (2.3) BS02 CA ? N/A P35247 10368295
    3798 1b08:C (2.3) BS03 CA ? N/A P35247 10368295
    3799 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    3800 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).