SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    380201 5mmi:4 (3.2) BS01 rna ? GO:0003735 ... P23326 28007896
    380202 5mmi:5 (3.2) BS01 rna ? GO:0003735 ... P12230 28007896
    380203 5mmi:5 (3.2) BS02 ZN ? GO:0003735 ... P12230 28007896
    380204 5mmi:6 (3.2) BS01 rna ? GO:0005840 ... P27684 28007896
    380205 5mmi:7 (3.2) BS01 rna ? GO:0003723 ... P82411 28007896
    380206 5mmi:7 (3.2) BS02 rna ? GO:0003723 ... P82411 28007896
    380207 5mmi:C (3.2) BS01 rna ? GO:0003723 ... P06509 28007896
    380208 5mmi:D (3.2) BS01 rna ? GO:0003735 ... P82191 28007896
    380209 5mmi:D (3.2) BS02 rna ? GO:0003735 ... P82191 28007896
    380210 5mmi:E (3.2) BS01 rna ? GO:0003735 ... O49937 28007896
    380211 5mmi:F (3.2) BS01 rna ? GO:0003723 ... P82192 28007896
    380212 5mmi:F (3.2) BS02 rna ? GO:0003723 ... P82192 28007896
    380213 5mmi:G (3.2) BS01 rna ? GO:0003735 ... P82193 28007896
    380214 5mmi:H (3.2) BS01 rna ? GO:0003735 ... P82180 28007896
    380215 5mmi:I (3.2) BS01 rna ? GO:0003735 ... P82139 28007896
    380216 5mmi:J (3.2) BS01 rna ? GO:0003735 ... P31164 28007896
    380217 5mmi:K (3.2) BS01 rna ? GO:0003729 ... P12629 28007896
    380218 5mmi:K (3.2) BS02 rna ? GO:0003729 ... P12629 28007896
    380219 5mmi:L (3.2) BS01 rna ? GO:0003735 ... P09596 28007896
    380220 5mmi:M (3.2) BS01 rna ? GO:0003729 ... P22798 28007896
    380221 5mmi:N (3.2) BS01 rna ? GO:0003735 ... P17353 28007896
    380222 5mmi:N (3.2) BS02 rna ? GO:0003735 ... P17353 28007896
    380223 5mmi:O (3.2) BS01 rna ? GO:0003735 ... P82194 28007896
    380224 5mmi:O (3.2) BS02 rna ? GO:0003735 ... P82194 28007896
    380225 5mmi:P (3.2) BS01 rna ? GO:0003735 ... P82195 28007896
    380226 5mmi:P (3.2) BS02 rna ? GO:0003735 ... P82195 28007896
    380227 5mmi:Q (3.2) BS01 rna ? GO:0003735 ... P82413 28007896
    380228 5mmi:Q (3.2) BS02 rna ? GO:0003735 ... P82413 28007896
    380229 5mmi:R (3.2) BS01 rna ? GO:0000027 ... P28803 28007896
    380230 5mmi:S (3.2) BS01 rna ? GO:0003723 ... P24613 28007896
    380231 5mmi:T (3.2) BS01 rna ? GO:0003735 ... P09594 28007896
    380232 5mmi:U (3.2) BS01 rna ? GO:0003729 ... Q9LWB5 28007896
    380233 5mmi:V (3.2) BS01 rna ? GO:0003723 ... P27683 28007896
    380234 5mmi:V (3.2) BS02 MG ? GO:0003723 ... P27683 28007896
    380235 5mmi:X (3.2) BS01 rna ? GO:0003735 ... P82190 28007896
    380236 5mmi:X (3.2) BS02 rna ? GO:0003735 ... P82190 28007896
    380237 5mmi:Y (3.2) BS01 rna ? GO:0003735 ... P82245 28007896
    380238 5mmi:Z (3.2) BS01 rna ? GO:0003735 ... P82248 28007896
    380239 5mmj:b (3.6) BS01 rna ? GO:0003735 ... P08242 28007896
    380240 5mmj:c (3.6) BS01 rna ? GO:0003723 ... P09595 28007896
    380241 5mmj:d (3.6) BS01 rna ? GO:0003723 ... P13788 28007896
    380242 5mmj:e (3.6) BS01 rna ? GO:0003723 ... Q9ST69 28007896
    380243 5mmj:f (3.6) BS01 rna ? GO:0003735 ... P82403 28007896
    380244 5mmj:g (3.6) BS01 rna ? GO:0000028 ... P82129 28007896
    380245 5mmj:h (3.6) BS01 rna ? GO:0003735 ... P09597 28007896
    380246 5mmj:i (3.6) BS01 rna ? GO:0000312 ... P82278 28007896
    380247 5mmj:j (3.6) BS01 rna ? GO:0003723 ... P82162 28007896
    380248 5mmj:k (3.6) BS01 rna ? GO:0003735 ... P06506 28007896
    380249 5mmj:l (3.6) BS01 rna ? GO:0003735 ... P62128 28007896
    380250 5mmj:m (3.6) BS01 rna ? GO:0003676 ... P82163 28007896
    380251 5mmj:n (3.6) BS01 rna ? GO:0003735 ... P06507 28007896
    380252 5mmj:o (3.6) BS01 rna ? GO:0003735 ... Q9M3I4 28007896
    380253 5mmj:p (3.6) BS01 rna ? GO:0003735 ... P28807 28007896
    380254 5mmj:q (3.6) BS01 rna ? GO:0003735 ... P82137 28007896
    380255 5mmj:r (3.6) BS01 rna ? GO:0003735 ... Q9M3K7 28007896
    380256 5mmj:s (3.6) BS01 peptide ? GO:0000028 ... P06508 28007896
    380257 5mmj:s (3.6) BS02 rna ? GO:0000028 ... P06508 28007896
    380258 5mmj:t (3.6) BS01 rna N/A GO:0003723 ... N/A 28007896
    380259 5mmj:u (3.6) BS01 rna ? GO:0003735 ... P82024 28007896
    380260 5mmj:v (3.6) BS01 rna ? GO:0003676 ... P82277 28007896
    380261 5mmj:w (3.6) BS01 rna ? GO:0003735 ... P82412 28007896
    380262 5mmj:x (3.6) BS01 rna ? GO:0005840 ... P47910 28007896
    380263 5mmj:x (3.6) BS02 MG ? GO:0005840 ... P47910 28007896
    380264 5mmj:y (3.6) BS01 rna ? GO:0006417 ... P19954 28007896
    380265 5mmm:0 (3.4) BS01 rna ? GO:0003735 ... P82249 28007896
    380266 5mmm:0 (3.4) BS02 rna ? GO:0003735 ... P82249 28007896
    380267 5mmm:1 (3.4) BS01 rna ? GO:0003735 ... P28804 28007896
    380268 5mmm:1 (3.4) BS02 rna ? GO:0003735 ... P28804 28007896
    380269 5mmm:2 (3.4) BS01 rna ? GO:0003735 ... P28805 28007896
    380270 5mmm:2 (3.4) BS02 ZN ? GO:0003735 ... P28805 28007896
    380271 5mmm:3 (3.4) BS01 rna ? GO:0003735 ... P82244 28007896
    380272 5mmm:4 (3.4) BS01 rna ? GO:0003735 ... P23326 28007896
    380273 5mmm:5 (3.4) BS01 rna ? GO:0003735 ... P12230 28007896
    380274 5mmm:5 (3.4) BS02 ZN ? GO:0003735 ... P12230 28007896
    380275 5mmm:6 (3.4) BS01 rna ? GO:0005840 ... P27684 28007896
    380276 5mmm:7 (3.4) BS01 rna ? GO:0003723 ... P82411 28007896
    380277 5mmm:7 (3.4) BS02 rna ? GO:0003723 ... P82411 28007896
    380278 5mmm:C (3.4) BS01 rna ? GO:0003723 ... P06509 28007896
    380279 5mmm:C (3.4) BS02 MG ? GO:0003723 ... P06509 28007896
    380280 5mmm:D (3.4) BS01 rna ? GO:0003735 ... P82191 28007896
    380281 5mmm:D (3.4) BS02 rna ? GO:0003735 ... P82191 28007896
    380282 5mmm:E (3.4) BS01 rna ? GO:0003735 ... O49937 28007896
    380283 5mmm:F (3.4) BS01 rna ? GO:0003723 ... P82192 28007896
    380284 5mmm:F (3.4) BS02 rna ? GO:0003723 ... P82192 28007896
    380285 5mmm:G (3.4) BS01 rna ? GO:0003735 ... P82193 28007896
    380286 5mmm:H (3.4) BS01 rna ? GO:0003735 ... P82180 28007896
    380287 5mmm:I (3.4) BS01 rna ? GO:0003735 ... P82139 28007896
    380288 5mmm:J (3.4) BS01 rna ? GO:0003735 ... P31164 28007896
    380289 5mmm:K (3.4) BS01 rna ? GO:0003729 ... P12629 28007896
    380290 5mmm:K (3.4) BS02 rna ? GO:0003729 ... P12629 28007896
    380291 5mmm:L (3.4) BS01 rna ? GO:0003735 ... P09596 28007896
    380292 5mmm:L (3.4) BS02 rna ? GO:0003735 ... P09596 28007896
    380293 5mmm:M (3.4) BS01 rna ? GO:0003729 ... P22798 28007896
    380294 5mmm:N (3.4) BS01 rna ? GO:0003735 ... P17353 28007896
    380295 5mmm:N (3.4) BS02 rna ? GO:0003735 ... P17353 28007896
    380296 5mmm:O (3.4) BS01 rna ? GO:0003735 ... P82194 28007896
    380297 5mmm:O (3.4) BS02 rna ? GO:0003735 ... P82194 28007896
    380298 5mmm:P (3.4) BS01 rna ? GO:0003735 ... P82195 28007896
    380299 5mmm:P (3.4) BS02 rna ? GO:0003735 ... P82195 28007896
    380300 5mmm:Q (3.4) BS01 rna ? GO:0003735 ... P82413 28007896
    380301 5mmm:Q (3.4) BS02 rna ? GO:0003735 ... P82413 28007896
    380302 5mmm:Q (3.4) BS03 rna ? GO:0003735 ... P82413 28007896
    380303 5mmm:R (3.4) BS01 rna ? GO:0000027 ... P28803 28007896
    380304 5mmm:S (3.4) BS01 rna ? GO:0003723 ... P24613 28007896
    380305 5mmm:T (3.4) BS01 rna ? GO:0003735 ... P09594 28007896
    380306 5mmm:U (3.4) BS01 rna ? GO:0003729 ... Q9LWB5 28007896
    380307 5mmm:V (3.4) BS01 rna ? GO:0003723 ... P27683 28007896
    380308 5mmm:X (3.4) BS01 rna ? GO:0003735 ... P82190 28007896
    380309 5mmm:X (3.4) BS02 rna ? GO:0003735 ... P82190 28007896
    380310 5mmm:Y (3.4) BS01 rna ? GO:0003735 ... P82245 28007896
    380311 5mmm:Z (3.4) BS01 rna ? GO:0003735 ... P82248 28007896
    380312 5mmm:b (3.4) BS01 rna ? GO:0003735 ... P08242 28007896
    380313 5mmm:c (3.4) BS01 rna ? GO:0003723 ... P09595 28007896
    380314 5mmm:d (3.4) BS01 rna ? GO:0003723 ... P13788 28007896
    380315 5mmm:e (3.4) BS01 rna ? GO:0003723 ... Q9ST69 28007896
    380316 5mmm:f (3.4) BS01 rna ? GO:0003735 ... P82403 28007896
    380317 5mmm:g (3.4) BS01 rna ? GO:0000028 ... P82129 28007896
    380318 5mmm:g (3.4) BS02 rna ? GO:0000028 ... P82129 28007896
    380319 5mmm:h (3.4) BS01 rna ? GO:0003735 ... P09597 28007896
    380320 5mmm:i (3.4) BS01 rna ? GO:0000312 ... P82278 28007896
    380321 5mmm:j (3.4) BS01 rna ? GO:0003723 ... P82162 28007896
    380322 5mmm:k (3.4) BS01 rna ? GO:0003735 ... P06506 28007896
    380323 5mmm:l (3.4) BS01 rna ? GO:0003735 ... P62128 28007896
    380324 5mmm:m (3.4) BS01 rna ? GO:0003676 ... P82163 28007896
    380325 5mmm:n (3.4) BS01 rna ? GO:0003735 ... P06507 28007896
    380326 5mmm:o (3.4) BS01 rna ? GO:0003735 ... Q9M3I4 28007896
    380327 5mmm:o (3.4) BS02 rna ? GO:0003735 ... Q9M3I4 28007896
    380328 5mmm:p (3.4) BS01 rna ? GO:0003735 ... P28807 28007896
    380329 5mmm:q (3.4) BS01 rna ? GO:0003735 ... P82137 28007896
    380330 5mmm:r (3.4) BS01 rna ? GO:0003735 ... Q9M3K7 28007896
    380331 5mmm:s (3.4) BS01 rna ? GO:0000028 ... P06508 28007896
    380332 5mmm:t (3.4) BS01 rna N/A GO:0003723 ... N/A 28007896
    380333 5mmm:u (3.4) BS01 rna ? GO:0003735 ... P82024 28007896
    380334 5mmm:v (3.4) BS01 rna ? GO:0003676 ... P82277 28007896
    380335 5mmm:w (3.4) BS01 rna ? GO:0003735 ... P82412 28007896
    380336 5mmm:x (3.4) BS01 rna ? GO:0005840 ... P47910 28007896
    380337 5mmm:x (3.4) BS02 MG ? GO:0005840 ... P47910 28007896
    380338 5mmm:y (3.4) BS01 rna ? GO:0006417 ... P19954 28007896
    380339 5mmm:y (3.4) BS02 rna ? GO:0006417 ... P19954 28007896
    380340 5mmn:A (1.9) BS01 O54 5.6.2.2 GO:0003677 ... P0AES7 28406299 MOAD: ic50=0.125uM
    380341 5mmo:A (1.81) BS01 9JG 5.6.2.2 GO:0003677 ... P0AES7 28406299
    380342 5mmp:A (2.05) BS01 G3Z 5.6.2.2 GO:0003677 ... P0AES7 28406299 MOAD: ic50=0.03uM
    380343 5mmr:A (2.0) BS01 H83 2.7.11.1 GO:0004672 ... P68400 28495381
    380344 5mmr:A (2.0) BS02 H83 2.7.11.1 GO:0004672 ... P68400 28495381
    380345 5mmr:B (2.0) BS01 H83 2.7.11.1 GO:0004672 ... P68400 28495381
    380346 5mms:A (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380347 5mms:A (2.8) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380348 5mms:A (2.8) BS03 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380349 5mms:B (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380350 5mms:B (2.8) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380351 5mms:C (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380352 5mms:C (2.8) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380353 5mms:C (2.8) BS03 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380354 5mms:D (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380355 5mms:D (2.8) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380356 5mms:D (2.8) BS03 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380357 5mms:E (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380358 5mms:E (2.8) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380359 5mms:F (2.8) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380360 5mms:F (2.8) BS02 HEM 4.2.1.22 GO:0004122 ... P35520 28421128
    380361 5mms:F (2.8) BS03 PLP 4.2.1.22 GO:0004122 ... P35520 28421128
    380362 5mmv:A (2.15) BS01 WE0 3.4.22.36 GO:0004197 ... P29466 N/A
    380363 5mmv:B (2.15) BS01 WE0 3.4.22.36 GO:0004197 ... P29466 N/A
    380364 5mmw:A (2.7) BS01 peptide ? GO:0003677 ... P19793 28691794
    380365 5mmw:A (2.7) BS02 SJZ ? GO:0003677 ... P19793 28691794
    380366 5mmx:A (2.882) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    380367 5mmx:B (2.882) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    380368 5mmy:B (1.88) BS01 CO3 3.5.2.6 GO:0005886 ... P14489 28678295
    380369 5mn0:A (2.0) BS01 A8S ? GO:0004864 ... A0A067E666 28736053
    380370 5mn0:B (2.0) BS01 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 28736053
    380371 5mn0:B (2.0) BS02 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 28736053
    380372 5mn0:B (2.0) BS03 MN 3.1.3.16 GO:0004722 ... Q9CAJ0 28736053
    380373 5mn1:A (0.79) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380374 5mn1:A (0.79) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    380375 5mn4:A (1.5) BS01 GDP ? GO:0003924 ... P0A031 28465423
    380376 5mn5:A (2.802) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380377 5mn5:B (2.802) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380378 5mn6:A (3.2) BS01 GDP ? GO:0003924 ... P0A031 28465423
    380379 5mn6:B (3.2) BS01 GDP ? GO:0003924 ... P0A031 28465423
    380380 5mn7:A (3.3) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380381 5mn7:B (3.3) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380382 5mn8:A (3.5) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380383 5mn8:B (3.5) BS01 GTP ? GO:0003924 ... P0A031 28465423
    380384 5mn9:A (2.05) BS01 peptide ? N/A P62992 28082312
    380385 5mn9:B (2.05) BS01 peptide ? N/A P62992 28082312
    380386 5mna:A (1.441) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380387 5mnb:A (0.939) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380388 5mnb:A (0.939) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    380389 5mnc:A (0.916) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380390 5mnc:A (0.916) BS02 ANL 3.4.21.4 GO:0004175 ... P00760 28371253
    380391 5mne:A (1.008) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380392 5mnf:A (0.99) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380393 5mng:A (0.86) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380394 5mng:A (0.86) BS02 BEN 3.4.21.4 GO:0004175 ... P00760 30177695
    380395 5mnh:A (0.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380396 5mnh:A (0.93) BS02 BEN 3.4.21.4 GO:0004175 ... P00760 30177695
    380397 5mnj:C (2.16) BS01 ZN 2.3.2.27 GO:0042802 ... Q00987 28553961
    380398 5mnj:C (2.16) BS02 ZN 2.3.2.27 GO:0042802 ... Q00987 28553961
    380399 5mnj:D (2.16) BS01 ZN ? GO:0005634 ... O15151 28553961
    380400 5mnj:D (2.16) BS02 ZN ? GO:0005634 ... O15151 28553961

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).