SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    380401 5mnj:G (2.16) BS01 ZN 2.3.2.27 GO:0042802 ... Q00987 28553961
    380402 5mnj:G (2.16) BS02 ZN 2.3.2.27 GO:0042802 ... Q00987 28553961
    380403 5mnj:H (2.16) BS01 ZN ? GO:0005634 ... O15151 28553961
    380404 5mnj:H (2.16) BS02 ZN ? GO:0005634 ... O15151 28553961
    380405 5mnk:A (0.799) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380406 5mnk:A (0.799) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    380407 5mnl:A (1.039) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380408 5mnl:A (1.039) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    380409 5mnm:A (0.98) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380410 5mnm:A (0.98) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 N/A
    380411 5mnn:A (0.859) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380412 5mnn:A (0.859) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 30177695 BindingDB: Ki=360nM
    380413 5mno:A (0.96) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380414 5mno:A (0.96) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 30177695 MOAD: Kd=143uM
    BindingDB: Ki=360nM
    380415 5mnp:A (1.01) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380416 5mnp:A (1.01) BS02 MRZ 3.4.21.4 GO:0004175 ... P00760 N/A BindingDB: Ki=360nM
    380417 5mnq:A (1.337) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380418 5mnq:A (1.337) BS02 J3I 3.4.21.4 GO:0004175 ... P00760 30177695 MOAD: Kd=3.6uM
    380419 5mnr:E (1.249) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 28590130
    380420 5mnr:E (1.249) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28590130
    380421 5mnr:E (1.249) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28590130
    380422 5mnr:E (1.249) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28590130
    380423 5mnr:E (1.249) BS05 CA 3.4.24.27 GO:0004222 ... P00800 28590130
    380424 5mnr:E (1.249) BS06 JC2 3.4.24.27 GO:0004222 ... P00800 28590130
    380425 5mns:A (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380426 5mns:A (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380427 5mns:B (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380428 5mns:B (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380429 5mns:C (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380430 5mns:C (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380431 5mns:D (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380432 5mns:D (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380433 5mns:E (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380434 5mns:E (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380435 5mns:F (2.62) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380436 5mns:F (2.62) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380437 5mnu:A (1.56) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380438 5mnu:A (1.56) BS02 BR 3.5.2.6 GO:0005886 ... P14489 28678295
    380439 5mnu:A (1.56) BS03 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380440 5mnu:B (1.56) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380441 5mnu:B (1.56) BS02 BR 3.5.2.6 GO:0005886 ... P14489 28678295
    380442 5mnu:B (1.56) BS03 BR 3.5.2.6 GO:0005886 ... P14489 28678295
    380443 5mnv:A (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380444 5mnv:A (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380445 5mnv:B (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380446 5mnv:B (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380447 5mnv:C (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380448 5mnv:C (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380449 5mnv:D (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380450 5mnv:D (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380451 5mnv:E (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380452 5mnv:E (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380453 5mnv:F (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380454 5mnv:F (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380455 5mnv:G (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380456 5mnv:G (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380457 5mnv:H (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380458 5mnv:H (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380459 5mnv:I (2.97) BS01 HEM ? GO:0004497 ... Q59819 30207799
    380460 5mnv:I (2.97) BS02 DEB ? GO:0004497 ... Q59819 30207799
    380461 5mnw:A (-1.00) BS01 Z90 4.6.1.2 GO:0020037 ... Q02153 N/A
    380462 5mnx:A (1.42) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380463 5mnx:A (1.42) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253
    380464 5mny:A (1.43) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380465 5mny:A (1.43) BS02 WOT 3.4.21.4 GO:0004175 ... P00760 28371253
    380466 5mnz:A (1.45) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380467 5mo0:A (1.502) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380468 5mo0:A (1.502) BS02 BEN 3.4.21.4 GO:0004175 ... P00760 30177695
    380469 5mo1:A (1.491) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380470 5mo1:A (1.491) BS02 UFZ 3.4.21.4 GO:0004175 ... P00760 N/A
    380471 5mo2:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380472 5mo2:A (1.5) BS02 D86 3.4.21.4 GO:0004175 ... P00760 30177695
    380473 5mo3:H (1.69) BS01 peptide N/A N/A N/A N/A
    380474 5mo3:L (1.69) BS01 peptide N/A N/A N/A N/A
    380475 5mo3:L (1.69) BS02 GLC N/A N/A N/A N/A
    380476 5mo4:A (2.17) BS01 NIL 2.7.10.2 GO:0004672 ... P00519 28329763 BindingDB: Kd=10nM, IC50=20nM, Ki=1nM
    380477 5mo4:A (2.17) BS02 AY7 2.7.10.2 GO:0004672 ... P00519 28329763
    380478 5mo5:A (2.04) BS01 4IH 2.7.11.1 GO:0004672 ... P68400 28495381
    380479 5mo6:A (1.825) BS01 KXZ 2.7.11.1 GO:0004672 ... P68400 28495381 BindingDB: Kd=250000nM
    380480 5mo7:A (2.15) BS01 YRA 2.7.11.1 GO:0004672 ... P68400 28495381
    380481 5mo8:A (1.82) BS01 C98 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=1.64uM
    380482 5mo8:B (1.82) BS01 C98 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=1.64uM
    380483 5mob:A (1.669) BS01 A8S N/A N/A N/A 28736053 MOAD: Kd=90uM
    380484 5moc:A (1.8) BS01 peptide ? GO:0000122 ... P31947 28640363
    380485 5mod:A (2.08) BS01 86L 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=300uM
    BindingDB: IC50=3000000nM
    380486 5moe:A (1.89) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 28495381
    380487 5moe:A (1.89) BS02 MG 2.7.11.1 GO:0004672 ... P68400 28495381
    380488 5moe:A (1.89) BS03 MG 2.7.11.1 GO:0004672 ... P68400 28495381
    380489 5moe:A (1.89) BS04 OQC 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=520uM
    380490 5moe:A (1.89) BS05 OQC 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=520uM
    380491 5moe:A (1.89) BS06 OQC 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=520uM
    380492 5moe:B (1.89) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 28495381
    380493 5moe:B (1.89) BS02 MG 2.7.11.1 GO:0004672 ... P68400 28495381
    380494 5moe:B (1.89) BS03 MG 2.7.11.1 GO:0004672 ... P68400 28495381
    380495 5moe:B (1.89) BS04 OQC 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=520uM
    380496 5moe:B (1.89) BS05 OQC 2.7.11.1 GO:0004672 ... P68400 28495381 MOAD: Kd=520uM
    380497 5mof:A (1.45) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28420789
    380498 5mof:A (1.45) BS02 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28420789
    380499 5mof:A (1.45) BS03 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28420789
    380500 5mog:A (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380501 5mog:A (2.77) BS02 NRF 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380502 5mog:B (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380503 5mog:B (2.77) BS02 NRF 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380504 5mog:C (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380505 5mog:C (2.77) BS02 NRF 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380506 5mog:D (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380507 5mog:D (2.77) BS02 NRF 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380508 5mog:E (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380509 5mog:E (2.77) BS02 NRF 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    380510 5moh:A (1.38) BS01 YTX 2.7.11.1 GO:0004672 ... P68400 28495381
    380511 5moi:B (2.2) BS01 MAN ? N/A P01854 28844738
    380512 5moi:D (2.2) BS01 MAN ? N/A P01854 28844738
    380513 5mok:D (2.0) BS01 MAN ? N/A P01854 28844738
    380514 5mol:A (1.75) BS01 MAN ? N/A P01854 28844738
    380515 5mol:B (1.75) BS01 MAN ? N/A P01854 28844738
    380516 5mon:A (0.939) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380517 5mon:A (0.939) BS02 2AP 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=3.3mM
    380518 5moo:A (1.441) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28371253
    380519 5moo:A (1.441) BS02 WOT 3.4.21.4 GO:0004175 ... P00760 28371253 MOAD: Kd=48.5mM
    380520 5mop:A (0.99) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380521 5moq:A (0.93) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380522 5moq:A (0.93) BS02 BEN 3.4.21.4 GO:0004175 ... P00760 30177695
    380523 5mor:A (0.98) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    380524 5mor:A (0.98) BS02 UFZ 3.4.21.4 GO:0004175 ... P00760 N/A
    380525 5mos:A (0.96) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30177695
    380526 5mos:A (0.96) BS02 D86 3.4.21.4 GO:0004175 ... P00760 30177695
    380527 5mot:A (2.09) BS01 HBD 2.7.11.1 GO:0004672 ... P68400 28495381
    380528 5mot:A (2.09) BS02 HBD 2.7.11.1 GO:0004672 ... P68400 28495381
    380529 5mow:A (1.86) BS01 BR9 2.7.11.1 GO:0004672 ... P68400 28495381
    380530 5mox:A (1.41) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380531 5mox:B (1.41) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380532 5mox:B (1.41) BS02 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380533 5moz:A (1.34) BS01 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380534 5moz:A (1.34) BS02 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380535 5moz:A (1.34) BS03 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380536 5moz:A (1.34) BS04 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380537 5moz:A (1.34) BS05 IOD 3.5.2.6 GO:0005886 ... P14489 28678295
    380538 5moz:A (1.34) BS06 IOD 3.5.2.6 GO:0005886 ... P14489 28678295
    380539 5moz:B (1.34) BS01 NA 3.5.2.6 GO:0005886 ... P14489 28678295
    380540 5moz:B (1.34) BS02 IOD 3.5.2.6 GO:0005886 ... P14489 28678295
    380541 5moz:B (1.34) BS03 IOD 3.5.2.6 GO:0005886 ... P14489 28678295
    380542 5moz:B (1.34) BS04 IOD 3.5.2.6 GO:0005886 ... P14489 28678295
    380543 5moz:B (1.34) BS05 NXL 3.5.2.6 GO:0005886 ... P14489 28678295
    380544 5mp1:C (3.1) BS01 peptide N/A N/A N/A N/A
    380545 5mp1:D (3.1) BS01 peptide N/A N/A N/A N/A
    380546 5mp1:F (3.1) BS01 peptide N/A N/A N/A N/A
    380547 5mp1:G (3.1) BS01 peptide N/A N/A N/A N/A
    380548 5mp1:H (3.1) BS01 peptide N/A N/A N/A N/A
    380549 5mp1:J (3.1) BS01 peptide N/A N/A N/A N/A
    380550 5mp1:K (3.1) BS01 peptide N/A N/A N/A N/A
    380551 5mp1:L (3.1) BS01 peptide N/A N/A N/A N/A
    380552 5mp3:A (2.75) BS01 peptide ? N/A Q99LC4 N/A
    380553 5mp3:B (2.75) BS01 peptide ? GO:0046872 ... Q52L64 N/A
    380554 5mp3:H (2.75) BS01 peptide ? N/A Q99LC4 N/A
    380555 5mp3:L (2.75) BS01 peptide ? GO:0046872 ... Q52L64 N/A
    380556 5mp5:A (2.31) BS01 peptide N/A N/A N/A N/A
    380557 5mp5:B (2.31) BS01 peptide N/A N/A N/A N/A
    380558 5mp5:E (2.31) BS01 peptide N/A N/A N/A N/A
    380559 5mp5:F (2.31) BS01 peptide N/A N/A N/A N/A
    380560 5mp5:H (2.31) BS01 peptide N/A N/A N/A N/A
    380561 5mp5:L (2.31) BS01 peptide N/A N/A N/A N/A
    380562 5mp8:A (1.92) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 28495381
    380563 5mp8:A (1.92) BS02 RKN 2.7.11.1 GO:0004672 ... P68400 28495381
    380564 5mp8:A (1.92) BS03 MG 2.7.11.1 GO:0004672 ... P68400 28495381
    380565 5mp8:B (1.92) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 28495381
    380566 5mp8:B (1.92) BS02 RKN 2.7.11.1 GO:0004672 ... P68400 28495381
    380567 5mp9:H (4.1) BS01 ATP ? GO:0000502 ... P33299 28115689
    380568 5mp9:I (4.1) BS01 ATP ? GO:0000502 ... P40327 28115689
    380569 5mp9:J (4.1) BS01 ADP ? GO:0000502 ... Q01939 28115689
    380570 5mp9:K (4.1) BS01 ATP ? GO:0000502 ... P33298 28115689
    380571 5mp9:L (4.1) BS01 ATP ? GO:0000502 ... P53549 28115689
    380572 5mp9:M (4.1) BS01 ATP ? GO:0000502 ... P33297 28115689
    380573 5mp9:M (4.1) BS02 ATP ? GO:0000502 ... P33297 28115689
    380574 5mpa:H (4.5) BS01 ATP ? GO:0000502 ... P33299 28115689
    380575 5mpa:I (4.5) BS01 ATP ? GO:0000502 ... P40327 28115689
    380576 5mpa:J (4.5) BS01 ADP ? GO:0000502 ... Q01939 28115689
    380577 5mpa:K (4.5) BS01 ATP ? GO:0000502 ... P33298 28115689
    380578 5mpa:L (4.5) BS01 ATP ? GO:0000502 ... P53549 28115689
    380579 5mpa:M (4.5) BS01 ATP ? GO:0000502 ... P33297 28115689
    380580 5mpa:M (4.5) BS02 ATP ? GO:0000502 ... P33297 28115689
    380581 5mpb:H (7.8) BS01 ANP ? GO:0000502 ... P33299 28115689
    380582 5mpb:I (7.8) BS01 ANP ? GO:0000502 ... P40327 28115689
    380583 5mpb:J (7.8) BS01 ANP ? GO:0000502 ... Q01939 28115689
    380584 5mpb:K (7.8) BS01 ANP ? GO:0000502 ... P33298 28115689
    380585 5mpb:K (7.8) BS02 ANP ? GO:0000502 ... P33298 28115689
    380586 5mpb:L (7.8) BS01 ANP ? GO:0000502 ... P53549 28115689
    380587 5mpb:M (7.8) BS01 ADP ? GO:0000502 ... P33297 28115689
    380588 5mpc:H (7.7) BS01 ATP ? GO:0000502 ... P33299 28115689
    380589 5mpc:H (7.7) BS02 ATP ? GO:0000502 ... P33299 28115689
    380590 5mpc:I (7.7) BS01 ATP ? GO:0000502 ... P40327 28115689
    380591 5mpc:I (7.7) BS02 ATP ? GO:0000502 ... P40327 28115689
    380592 5mpc:J (7.7) BS01 ATP ? GO:0000502 ... Q01939 28115689
    380593 5mpc:J (7.7) BS02 ATP ? GO:0000502 ... Q01939 28115689
    380594 5mpc:K (7.7) BS01 ADP ? GO:0000502 ... P33298 28115689
    380595 5mpc:L (7.7) BS01 ADP ? GO:0000502 ... P53549 28115689
    380596 5mpc:M (7.7) BS01 ATP ? GO:0000502 ... P33297 28115689
    380597 5mpf:A (2.918) BS01 dna ? GO:0003700 ... Q9NZI5 29309642
    380598 5mpf:A (2.918) BS02 dna ? GO:0003700 ... Q9NZI5 29309642
    380599 5mpf:B (2.918) BS01 dna ? GO:0003700 ... Q9NZI5 29309642
    380600 5mpf:B (2.918) BS02 dna ? GO:0003700 ... Q9NZI5 29309642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).