SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    380601 5mpg:A (-1.00) BS01 rna ? GO:0003676 ... P09651 28650318
    380602 5mpj:A (2.14) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 28495381
    380603 5mpj:A (2.14) BS02 IHP 2.7.11.1 GO:0004672 ... P68400 28495381
    380604 5mpj:A (2.14) BS03 J2P 2.7.11.1 GO:0004672 ... P68400 28495381
    380605 5mpk:A (1.9) BS01 0BC 2.3.1.-
    2.3.1.48
    N/A Q92793 30258543 MOAD: Kd=0.003uM
    BindingDB: IC50=15nM, Kd=3.0nM
    380606 5mpk:B (1.9) BS01 0BC 2.3.1.-
    2.3.1.48
    N/A Q92793 30258543 MOAD: Kd=0.003uM
    BindingDB: IC50=15nM, Kd=3.0nM
    380607 5mpl:A (-1.00) BS01 rna ? GO:0003676 ... P09651 28650318
    380608 5mpm:A (3.3) BS01 MGF 7.2.2.10 GO:0000045 ... P11607 30777856
    380609 5mpm:A (3.3) BS02 CZA 7.2.2.10 GO:0000045 ... P11607 30777856
    380610 5mpm:A (3.3) BS03 MG 7.2.2.10 GO:0000045 ... P11607 30777856
    380611 5mpn:A (1.23) BS01 YE5 2.3.1.-
    2.3.1.48
    N/A Q92793 30258543 MOAD: Kd=0.085uM
    BindingDB: Kd=85nM, IC50=59nM
    380612 5mpn:A (1.23) BS02 YE5 2.3.1.-
    2.3.1.48
    N/A Q92793 30258543 MOAD: Kd=0.085uM
    BindingDB: Kd=85nM, IC50=59nM
    380613 5mpq:A (1.78) BS01 BLG 4.2.2.- GO:0003824 ... Q9JXP1 28241458
    380614 5mpr:A (1.6) BS01 PLP 2.6.1.42 GO:0003824 ... O15382 28681360
    380615 5mps:A (3.85) BS01 rna ? GO:0000244 ... P33334 28076345
    380616 5mps:A (3.85) BS02 rna ? GO:0000244 ... P33334 28076345
    380617 5mps:A (3.85) BS03 rna ? GO:0000244 ... P33334 28076345
    380618 5mps:A (3.85) BS04 rna ? GO:0000244 ... P33334 28076345
    380619 5mps:A (3.85) BS05 rna ? GO:0000244 ... P33334 28076345
    380620 5mps:A (3.85) BS06 IHP ? GO:0000244 ... P33334 28076345
    380621 5mps:C (3.85) BS01 rna ? GO:0000244 ... P36048 28076345
    380622 5mps:C (3.85) BS02 GTP ? GO:0000244 ... P36048 28076345
    380623 5mps:H (3.85) BS01 rna ? GO:0000398 ... P53333 28076345
    380624 5mps:J (3.85) BS01 rna ? GO:0000398 ... Q12417 28076345
    380625 5mps:K (3.85) BS01 rna ? GO:0000350 ... P28004 28076345
    380626 5mps:K (3.85) BS02 rna ? GO:0000350 ... P28004 28076345
    380627 5mps:K (3.85) BS03 rna ? GO:0000350 ... P28004 28076345
    380628 5mps:L (3.85) BS01 rna ? GO:0000282 ... P25337 28076345
    380629 5mps:L (3.85) BS02 rna ? GO:0000282 ... P25337 28076345
    380630 5mps:L (3.85) BS03 ZN ? GO:0000282 ... P25337 28076345
    380631 5mps:L (3.85) BS04 ZN ? GO:0000282 ... P25337 28076345
    380632 5mps:L (3.85) BS05 ZN ? GO:0000282 ... P25337 28076345
    380633 5mps:M (3.85) BS01 rna ? GO:0000387 ... Q12046 28076345
    380634 5mps:M (3.85) BS02 rna ? GO:0000387 ... Q12046 28076345
    380635 5mps:M (3.85) BS03 ZN ? GO:0000387 ... Q12046 28076345
    380636 5mps:N (3.85) BS01 rna ? GO:0000398 ... P38241 28076345
    380637 5mps:N (3.85) BS02 ZN ? GO:0000398 ... P38241 28076345
    380638 5mps:N (3.85) BS03 ZN ? GO:0000398 ... P38241 28076345
    380639 5mps:O (3.85) BS01 rna ? GO:0000350 ... Q03654 28076345
    380640 5mps:O (3.85) BS02 rna ? GO:0000350 ... Q03654 28076345
    380641 5mps:O (3.85) BS03 rna ? GO:0000350 ... Q03654 28076345
    380642 5mps:P (3.85) BS01 rna ? GO:0000398 ... Q03772 28076345
    380643 5mps:P (3.85) BS02 rna ? GO:0000398 ... Q03772 28076345
    380644 5mps:P (3.85) BS03 rna ? GO:0000398 ... Q03772 28076345
    380645 5mps:R (3.85) BS01 rna ? GO:0000398 ... Q03375 28076345
    380646 5mps:S (3.85) BS01 rna ? GO:0000245 ... Q12309 28076345
    380647 5mps:b (3.85) BS01 rna ? GO:0000243 ... P40018 28076345
    380648 5mps:d (3.85) BS01 rna ? GO:0000243 ... P43321 28076345
    380649 5mps:e (3.85) BS01 rna ? GO:0000243 ... Q12330 28076345
    380650 5mps:f (3.85) BS01 rna ? GO:0000243 ... P54999 28076345
    380651 5mps:g (3.85) BS01 rna ? GO:0000243 ... P40204 28076345
    380652 5mps:h (3.85) BS01 rna ? GO:0000243 ... Q02260 28076345
    380653 5mps:j (3.85) BS01 rna ? GO:0000243 ... Q06217 28076345
    380654 5mps:o (3.85) BS01 rna ? GO:0000348 ... P40968 28076345
    380655 5mps:o (3.85) BS02 rna ? GO:0000348 ... P40968 28076345
    380656 5mps:y (3.85) BS01 rna ? GO:0000384 ... P53277 28076345
    380657 5mps:y (3.85) BS02 rna ? GO:0000384 ... P53277 28076345
    380658 5mpt:A (1.648) BS01 SAH 2.3.1.- N/A Q65Z23 28238725
    380659 5mpy:A (2.247) BS01 CA ? GO:0016554 ... Q9LPZ1 28201607
    380660 5mpy:B (2.247) BS01 CA ? GO:0016554 ... Q9LPZ1 28201607
    380661 5mpy:B (2.247) BS02 CA ? GO:0016554 ... Q9LPZ1 28201607
    380662 5mpy:B (2.247) BS03 CA ? GO:0016554 ... Q9LPZ1 28201607
    380663 5mpz:A (1.4) BS01 4I8 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781 MOAD: Kd=85uM
    BindingDB: IC50=455000nM, Kd=85000nM
    380664 5mq0:A (4.17) BS01 rna ? GO:0000244 ... P33334 28076345
    380665 5mq0:A (4.17) BS02 rna ? GO:0000244 ... P33334 28076345
    380666 5mq0:A (4.17) BS03 rna ? GO:0000244 ... P33334 28076345
    380667 5mq0:A (4.17) BS04 rna ? GO:0000244 ... P33334 28076345
    380668 5mq0:A (4.17) BS05 rna ? GO:0000244 ... P33334 28076345
    380669 5mq0:A (4.17) BS06 IHP ? GO:0000244 ... P33334 28076345
    380670 5mq0:C (4.17) BS01 rna ? GO:0000244 ... P36048 28076345
    380671 5mq0:C (4.17) BS02 GTP ? GO:0000244 ... P36048 28076345
    380672 5mq0:H (4.17) BS01 rna ? GO:0000398 ... P53333 28076345
    380673 5mq0:J (4.17) BS01 rna ? GO:0000398 ... Q12417 28076345
    380674 5mq0:K (4.17) BS01 rna ? GO:0000350 ... P28004 28076345
    380675 5mq0:K (4.17) BS02 rna ? GO:0000350 ... P28004 28076345
    380676 5mq0:K (4.17) BS03 rna ? GO:0000350 ... P28004 28076345
    380677 5mq0:L (4.17) BS01 rna ? GO:0000282 ... P25337 28076345
    380678 5mq0:L (4.17) BS02 rna ? GO:0000282 ... P25337 28076345
    380679 5mq0:L (4.17) BS03 ZN ? GO:0000282 ... P25337 28076345
    380680 5mq0:L (4.17) BS04 ZN ? GO:0000282 ... P25337 28076345
    380681 5mq0:L (4.17) BS05 ZN ? GO:0000282 ... P25337 28076345
    380682 5mq0:M (4.17) BS01 rna ? GO:0000387 ... Q12046 28076345
    380683 5mq0:M (4.17) BS02 rna ? GO:0000387 ... Q12046 28076345
    380684 5mq0:M (4.17) BS03 ZN ? GO:0000387 ... Q12046 28076345
    380685 5mq0:N (4.17) BS01 rna ? GO:0000398 ... P38241 28076345
    380686 5mq0:N (4.17) BS02 ZN ? GO:0000398 ... P38241 28076345
    380687 5mq0:N (4.17) BS03 ZN ? GO:0000398 ... P38241 28076345
    380688 5mq0:O (4.17) BS01 rna ? GO:0000350 ... Q03654 28076345
    380689 5mq0:O (4.17) BS02 rna ? GO:0000350 ... Q03654 28076345
    380690 5mq0:O (4.17) BS03 rna ? GO:0000350 ... Q03654 28076345
    380691 5mq0:P (4.17) BS01 rna ? GO:0000398 ... Q03772 28076345
    380692 5mq0:P (4.17) BS02 rna ? GO:0000398 ... Q03772 28076345
    380693 5mq0:P (4.17) BS03 rna ? GO:0000398 ... Q03772 28076345
    380694 5mq0:R (4.17) BS01 rna ? GO:0000398 ... Q03375 28076345
    380695 5mq0:S (4.17) BS01 rna ? GO:0000245 ... Q12309 28076345
    380696 5mq0:V (4.17) BS01 rna 3.6.4.13 GO:0000350 ... P24384 28076345
    380697 5mq0:Y (4.17) BS01 rna ? GO:0000398 ... P40567 28076345
    380698 5mq0:b (4.17) BS01 rna ? GO:0000243 ... P40018 28076345
    380699 5mq0:d (4.17) BS01 rna ? GO:0000243 ... P43321 28076345
    380700 5mq0:e (4.17) BS01 rna ? GO:0000243 ... Q12330 28076345
    380701 5mq0:f (4.17) BS01 rna ? GO:0000243 ... P54999 28076345
    380702 5mq0:g (4.17) BS01 rna ? GO:0000243 ... P40204 28076345
    380703 5mq0:h (4.17) BS01 rna ? GO:0000243 ... Q02260 28076345
    380704 5mq0:j (4.17) BS01 rna ? GO:0000243 ... Q06217 28076345
    380705 5mq0:k (4.17) BS01 rna ? GO:0000243 ... P40018 28076345
    380706 5mq0:n (4.17) BS01 rna ? GO:0000243 ... P43321 28076345
    380707 5mq0:o (4.17) BS01 rna ? GO:0000348 ... P40968 28076345
    380708 5mq0:o (4.17) BS02 rna ? GO:0000348 ... P40968 28076345
    380709 5mq0:y (4.17) BS01 rna ? GO:0000384 ... P53277 28076345
    380710 5mq0:y (4.17) BS02 rna ? GO:0000384 ... P53277 28076345
    380711 5mq1:A (1.5) BS01 5U6 ? N/A Q9NPI1 N/A BindingDB: IC50=3410nM, Kd=418nM
    380712 5mq1:A (1.5) BS02 ZN ? N/A Q9NPI1 N/A
    380713 5mq4:A (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380714 5mq4:A (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380715 5mq4:B (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380716 5mq4:B (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380717 5mq4:C (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380718 5mq4:C (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380719 5mq4:D (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380720 5mq4:D (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380721 5mq4:E (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380722 5mq4:E (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380723 5mq4:F (2.7) BS01 ZN ? N/A Q9ULU4 N/A
    380724 5mq4:F (2.7) BS02 ZN ? N/A Q9ULU4 N/A
    380725 5mq5:A (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    380726 5mq5:B (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    380727 5mq5:C (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    380728 5mq5:D (1.6) BS01 ASP 3.5.1.1 GO:0004067 ... P00805 29101342
    380729 5mq6:A (2.0) BS01 FAD ? GO:0000166 ... G2QA95 28010060
    380730 5mq6:A (2.0) BS02 NDP ? GO:0000166 ... G2QA95 28010060
    380731 5mqe:A (1.65) BS01 PKU 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781 MOAD: Kd=4uM
    BindingDB: Kd=4000nM, IC50=40000nM
    380732 5mqe:B (1.65) BS01 PKU 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781 MOAD: Kd=4uM
    BindingDB: Kd=4000nM, IC50=40000nM
    380733 5mqf:A (5.9) BS01 rna ? GO:0000244 ... Q6P2Q9 28076346
    380734 5mqf:A (5.9) BS02 rna ? GO:0000244 ... Q6P2Q9 28076346
    380735 5mqf:A (5.9) BS03 rna ? GO:0000244 ... Q6P2Q9 28076346
    380736 5mqf:A (5.9) BS04 rna ? GO:0000244 ... Q6P2Q9 28076346
    380737 5mqf:A (5.9) BS05 rna ? GO:0000244 ... Q6P2Q9 28076346
    380738 5mqf:C (5.9) BS01 rna ? GO:0000122 ... Q13573 28076346
    380739 5mqf:E (5.9) BS01 rna ? GO:0000398 ... O60508 28076346
    380740 5mqf:L (5.9) BS01 rna ? GO:0000077 ... Q99459 28076346
    380741 5mqf:N (5.9) BS01 rna ? GO:0000398 ... O95926 28076346
    380742 5mqf:O (5.9) BS01 rna ? GO:0000245 ... Q9BZJ0 28076346
    380743 5mqf:P (5.9) BS01 rna ? GO:0000398 ... Q9NW64 28076346
    380744 5mqf:Q (5.9) BS01 rna ? GO:0000398 ... P41223 28076346
    380745 5mqf:R (5.9) BS01 rna ? GO:0000398 ... Q9P013 28076346
    380746 5mqf:S (5.9) BS01 rna ? GO:0000398 ... Q9UQ35 28076346
    380747 5mqf:X (5.9) BS01 rna ? GO:0000398 ... P08579 28076346
    380748 5mqf:a (5.9) BS01 rna ? GO:0000245 ... P62316 28076346
    380749 5mqf:b (5.9) BS01 rna ? GO:0000387 ... P62306 28076346
    380750 5mqf:c (5.9) BS01 rna ? GO:0000245 ... P62304 28076346
    380751 5mqf:d (5.9) BS01 rna ? GO:0000245 ... P62308 28076346
    380752 5mqf:g (5.9) BS01 rna ? GO:0000243 ... P62314 28076346
    380753 5mqf:h (5.9) BS01 rna ? GO:0000245 ... P62316 28076346
    380754 5mqf:i (5.9) BS01 rna ? GO:0000387 ... P62306 28076346
    380755 5mqf:j (5.9) BS01 rna ? GO:0000245 ... P62304 28076346
    380756 5mqf:k (5.9) BS01 rna ? GO:0000245 ... P62308 28076346
    380757 5mqf:l (5.9) BS01 rna ? GO:0000243 ... P62318 28076346
    380758 5mqf:o (5.9) BS01 rna 5.2.1.8 GO:0000398 ... Q9UNP9 28076346
    380759 5mqg:A (1.35) BS01 F31 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781
    380760 5mqg:B (1.35) BS01 F31 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781
    380761 5mqj:A (3.7) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380762 5mqj:A (3.7) BS02 UMP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380763 5mqj:B (3.7) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380764 5mqj:B (3.7) BS02 UMP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380765 5mqj:B (3.7) BS03 MG 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380766 5mqj:C (3.7) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380767 5mqj:C (3.7) BS02 UMP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380768 5mqj:D (3.7) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380769 5mqj:D (3.7) BS02 UMP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380770 5mqk:A (1.53) BS01 QPR 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781
    380771 5mqk:B (1.53) BS01 QPR 2.3.1.-
    2.3.1.48
    N/A Q92793 28410781
    380772 5mql:A (3.25) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380773 5mql:A (3.25) BS02 G65 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380774 5mql:B (3.25) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380775 5mql:B (3.25) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380776 5mql:C (3.25) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380777 5mql:C (3.25) BS02 DCM 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380778 5mql:D (3.25) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380779 5mqm:A (2.11) BS01 CA ? N/A Q8A931 28329766
    380780 5mqm:A (2.11) BS02 CA ? N/A Q8A931 28329766
    380781 5mqm:A (2.11) BS03 RPQ ? N/A Q8A931 28329766
    380782 5mqn:A (1.9) BS01 CA ? N/A Q8A931 28329766
    380783 5mqn:A (1.9) BS02 CA ? N/A Q8A931 28329766
    380784 5mqp:A (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380785 5mqp:B (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380786 5mqp:B (2.0) BS02 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380787 5mqp:C (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380788 5mqp:D (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380789 5mqp:E (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380790 5mqp:E (2.0) BS02 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380791 5mqp:F (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380792 5mqp:G (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380793 5mqp:H (2.0) BS01 CA 3.2.1.22
    3.2.1.n1
    N/A Q8A915 N/A
    380794 5mqr:A (2.2) BS01 CA 3.2.1.187 GO:0005975 ... Q8A8Z7 28329766
    380795 5mqr:A (2.2) BS02 CA 3.2.1.187 GO:0005975 ... Q8A8Z7 28329766
    380796 5mqs:A (3.0) BS01 AHR 3.2.1.187 GO:0005975 ... Q8A8Z7 28329766
    380797 5mqs:A (3.0) BS02 CA 3.2.1.187 GO:0005975 ... Q8A8Z7 28329766
    380798 5mqt:A (3.2) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380799 5mqt:A (3.2) BS02 STI 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277
    380800 5mqt:B (3.2) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 29127277

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).