SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1896 1897 1898 1899 1900 1901 1902 1903 1904 1905 1906 1907 1908 1909 1910 1911 1912 1913 1914 1915 1916 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    381001 5mre:LL (3.75) BS01 rna ? GO:0003735 ... P53732 28154081
    381002 5mre:M (3.75) BS01 rna ? GO:0003735 ... P25626 28154081
    381003 5mre:M (3.75) BS02 rna ? GO:0003735 ... P25626 28154081
    381004 5mre:MM (3.75) BS01 rna ? GO:0003676 ... P53937 28154081
    381005 5mre:N (3.75) BS01 rna ? GO:0005840 ... P40858 28154081
    381006 5mre:NN (3.75) BS01 rna ? GO:0003735 ... P10663 28154081
    381007 5mre:O (3.75) BS01 rna ? GO:0003735 ... P53881 28154081
    381008 5mre:OO (3.75) BS01 rna ? GO:0003735 ... P21771 28154081
    381009 5mre:OO (3.75) BS02 rna ? GO:0003735 ... P21771 28154081
    381010 5mre:P (3.75) BS01 rna ? GO:0003735 ... P32387 28154081
    381011 5mre:PP (3.75) BS01 rna ? GO:0003735 ... Q02608 28154081
    381012 5mre:Q (3.75) BS01 rna ? GO:0003735 ... P36534 28154081
    381013 5mre:QQ (3.75) BS01 rna ? GO:0003735 ... Q03246 28154081
    381014 5mre:R (3.75) BS01 rna ? GO:0003735 ... P12687 28154081
    381015 5mre:RR (3.75) BS01 rna ? GO:0003735 ... P40033 28154081
    381016 5mre:S (3.75) BS01 rna ? GO:0003735 ... P36525 28154081
    381017 5mre:SS (3.75) BS01 rna ? GO:0003723 ... P53733 28154081
    381018 5mre:T (3.75) BS01 rna ? GO:0003735 ... P36517 28154081
    381019 5mre:TT (3.75) BS01 rna ? GO:0003735 ... P38175 28154081
    381020 5mre:U (3.75) BS01 rna ? GO:0003735 ... P20084 28154081
    381021 5mre:UU (3.75) BS01 rna ? GO:0003735 ... P40496 28154081
    381022 5mre:V (3.75) BS01 rna ? GO:0003735 ... P36531 28154081
    381023 5mre:V (3.75) BS02 rna ? GO:0003735 ... P36531 28154081
    381024 5mre:VV (3.75) BS01 rna ? N/A P17558 28154081
    381025 5mre:W (3.75) BS01 rna ? GO:0003735 ... P25348 28154081
    381026 5mre:W (3.75) BS02 ZN ? GO:0003735 ... P25348 28154081
    381027 5mre:WW (3.75) BS01 rna ? GO:0005763 ... Q01163 28154081
    381028 5mre:WW (3.75) BS02 GDP ? GO:0005763 ... Q01163 28154081
    381029 5mre:X (3.75) BS01 rna ? GO:0003735 ... P36533 28154081
    381030 5mre:X (3.75) BS02 rna ? GO:0003735 ... P36533 28154081
    381031 5mre:XX (3.75) BS01 rna ? N/A P53305 28154081
    381032 5mre:Y (3.75) BS01 rna ? GO:0003735 ... Q04598 28154081
    381033 5mre:YY (3.75) BS01 rna ? GO:0003735 ... Q03976 28154081
    381034 5mre:Z (3.75) BS01 rna ? GO:0003735 ... P53921 28154081
    381035 5mre:ZZ (3.75) BS01 rna ? GO:0003735 ... O75012 28154081
    381036 5mre:a (3.75) BS01 rna ? GO:0003735 ... P22354 28154081
    381037 5mre:b (3.75) BS01 rna ? GO:0003735 ... P23369 28154081
    381038 5mre:c (3.75) BS01 rna ? GO:0003735 ... P14063 28154081
    381039 5mre:d (3.75) BS01 rna ? GO:0000002 ... Q06630 28154081
    381040 5mre:dd (3.75) BS01 rna N/A N/A N/A 28154081
    381041 5mrf:0 (4.97) BS01 rna ? GO:0003735 ... O14464 28154081
    381042 5mrf:0 (4.97) BS02 ZN ? GO:0003735 ... O14464 28154081
    381043 5mrf:1 (4.97) BS01 rna ? GO:0003735 ... Q06678 28154081
    381044 5mrf:11 (4.97) BS01 rna ? N/A P32344 28154081
    381045 5mrf:11 (4.97) BS02 rna ? N/A P32344 28154081
    381046 5mrf:2 (4.97) BS01 rna ? GO:0003735 ... P36527 28154081
    381047 5mrf:22 (4.97) BS01 rna ? N/A P38783 28154081
    381048 5mrf:3 (4.97) BS01 rna ? GO:0003735 ... P36526 28154081
    381049 5mrf:33 (4.97) BS01 rna ? GO:0003735 ... P47141 28154081
    381050 5mrf:4 (4.97) BS01 rna ? GO:0000002 ... Q06090 28154081
    381051 5mrf:5 (4.97) BS01 rna ? GO:0003725 ... P36516 28154081
    381052 5mrf:55 (4.97) BS01 rna ? GO:0003735 ... P12686 28154081
    381053 5mrf:6 (4.97) BS01 rna ? GO:0003735 ... P36528 28154081
    381054 5mrf:66 (4.97) BS01 rna ? GO:0003735 ... P53292 28154081
    381055 5mrf:7 (4.97) BS01 rna ? GO:0003735 ... P25642 28154081
    381056 5mrf:77 (4.97) BS01 rna ? N/A Q03430 28154081
    381057 5mrf:8 (4.97) BS01 rna ? GO:0003735 ... Q02204 28154081
    381058 5mrf:9 (4.97) BS01 rna ? GO:0003735 ... P36523 28154081
    381059 5mrf:AA (4.97) BS01 rna ? GO:0003735 ... Q02950 28154081
    381060 5mrf:B (4.97) BS01 rna ? GO:0003723 ... P32611 28154081
    381061 5mrf:B (4.97) BS02 rna ? GO:0003723 ... P32611 28154081
    381062 5mrf:B (4.97) BS03 MG ? GO:0003723 ... P32611 28154081
    381063 5mrf:BB (4.97) BS01 rna ? GO:0003735 ... P32902 28154081
    381064 5mrf:BB (4.97) BS02 MG ? GO:0003735 ... P32902 28154081
    381065 5mrf:C (4.97) BS01 rna ? GO:0003735 ... P31334 28154081
    381066 5mrf:CC (4.97) BS01 rna ? GO:0003735 ... P02381 28154081
    381067 5mrf:D (4.97) BS01 rna ? GO:0003735 ... P51998 28154081
    381068 5mrf:DD (4.97) BS01 rna ? GO:0003723 ... P27929 28154081
    381069 5mrf:E (4.97) BS01 rna ? GO:0003723 ... P36519 28154081
    381070 5mrf:EE (4.97) BS01 rna ? GO:0003723 ... P33759 28154081
    381071 5mrf:F (4.97) BS01 rna ? GO:0003735 ... P32904 28154081
    381072 5mrf:FF (4.97) BS01 rna ? GO:0003735 ... P28778 28154081
    381073 5mrf:G (4.97) BS01 rna ? N/A P53724 28154081
    381074 5mrf:GG (4.97) BS01 rna ? GO:0003723 ... P47150 28154081
    381075 5mrf:H (4.97) BS01 rna ? GO:0003729 ... Q12487 28154081
    381076 5mrf:HH (4.97) BS01 rna ? GO:0003735 ... Q03799 28154081
    381077 5mrf:I (4.97) BS01 rna ? GO:0003735 ... P35996 28154081
    381078 5mrf:II (4.97) BS01 rna ? GO:0003735 ... P38120 28154081
    381079 5mrf:J (4.97) BS01 rna ? GO:0003735 ... P36520 28154081
    381080 5mrf:JJ (4.97) BS01 rna ? GO:0003735 ... Q03201 28154081
    381081 5mrf:K (4.97) BS01 rna ? GO:0003735 ... P38064 28154081
    381082 5mrf:KK (4.97) BS01 rna ? GO:0003735 ... P42847 28154081
    381083 5mrf:L (4.97) BS01 rna ? GO:0003735 ... P22353 28154081
    381084 5mrf:LL (4.97) BS01 rna ? GO:0003735 ... P53732 28154081
    381085 5mrf:M (4.97) BS01 rna ? GO:0003735 ... P25626 28154081
    381086 5mrf:MM (4.97) BS01 rna ? GO:0003676 ... P53937 28154081
    381087 5mrf:MM (4.97) BS02 MG ? GO:0003676 ... P53937 28154081
    381088 5mrf:N (4.97) BS01 rna ? GO:0005840 ... P40858 28154081
    381089 5mrf:N (4.97) BS02 MG ? GO:0005840 ... P40858 28154081
    381090 5mrf:NN (4.97) BS01 rna ? GO:0003735 ... P10663 28154081
    381091 5mrf:O (4.97) BS01 rna ? GO:0003735 ... P53881 28154081
    381092 5mrf:OO (4.97) BS01 rna ? GO:0003735 ... P21771 28154081
    381093 5mrf:OO (4.97) BS02 rna ? GO:0003735 ... P21771 28154081
    381094 5mrf:P (4.97) BS01 rna ? GO:0003735 ... P32387 28154081
    381095 5mrf:PP (4.97) BS01 rna ? GO:0003735 ... Q02608 28154081
    381096 5mrf:Q (4.97) BS01 rna ? GO:0003735 ... P36534 28154081
    381097 5mrf:QQ (4.97) BS01 rna ? GO:0003735 ... Q03246 28154081
    381098 5mrf:R (4.97) BS01 rna ? GO:0003735 ... P12687 28154081
    381099 5mrf:RR (4.97) BS01 rna ? GO:0003735 ... P40033 28154081
    381100 5mrf:S (4.97) BS01 rna ? GO:0003735 ... P36525 28154081
    381101 5mrf:SS (4.97) BS01 rna ? GO:0003723 ... P53733 28154081
    381102 5mrf:T (4.97) BS01 rna ? GO:0003735 ... P36517 28154081
    381103 5mrf:TT (4.97) BS01 rna ? GO:0003735 ... P38175 28154081
    381104 5mrf:U (4.97) BS01 rna ? GO:0003735 ... P20084 28154081
    381105 5mrf:UU (4.97) BS01 rna ? GO:0003735 ... P40496 28154081
    381106 5mrf:V (4.97) BS01 rna ? GO:0003735 ... P36531 28154081
    381107 5mrf:V (4.97) BS02 rna ? GO:0003735 ... P36531 28154081
    381108 5mrf:VV (4.97) BS01 rna ? N/A P17558 28154081
    381109 5mrf:W (4.97) BS01 rna ? GO:0003735 ... P25348 28154081
    381110 5mrf:W (4.97) BS02 ZN ? GO:0003735 ... P25348 28154081
    381111 5mrf:WW (4.97) BS01 rna ? GO:0005763 ... Q01163 28154081
    381112 5mrf:WW (4.97) BS02 GDP ? GO:0005763 ... Q01163 28154081
    381113 5mrf:WW (4.97) BS03 MG ? GO:0005763 ... Q01163 28154081
    381114 5mrf:X (4.97) BS01 rna ? GO:0003735 ... P36533 28154081
    381115 5mrf:X (4.97) BS02 rna ? GO:0003735 ... P36533 28154081
    381116 5mrf:XX (4.97) BS01 rna ? N/A P53305 28154081
    381117 5mrf:Y (4.97) BS01 rna ? GO:0003735 ... Q04598 28154081
    381118 5mrf:YY (4.97) BS01 rna ? GO:0003735 ... Q03976 28154081
    381119 5mrf:Z (4.97) BS01 rna ? GO:0003735 ... P53921 28154081
    381120 5mrf:ZZ (4.97) BS01 rna ? GO:0003735 ... O75012 28154081
    381121 5mrf:a (4.97) BS01 rna ? GO:0003735 ... P22354 28154081
    381122 5mrf:b (4.97) BS01 rna ? GO:0003735 ... P23369 28154081
    381123 5mrf:c (4.97) BS01 rna ? GO:0003735 ... P14063 28154081
    381124 5mrf:d (4.97) BS01 rna ? GO:0000002 ... Q06630 28154081
    381125 5mrf:dd (4.97) BS01 rna N/A N/A N/A 28154081
    381126 5mrh:A (2.5) BS01 Q9Z ? GO:0016020 ... Q99523 28462834 MOAD: ic50=0.0000631M
    BindingDB: IC50=63096nM
    381127 5mri:A (2.0) BS01 Q9Y ? GO:0016020 ... Q99523 28462834
    381128 5mrk:A (1.9) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 28357511
    381129 5mrk:B (1.9) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 28357511
    381130 5mrl:A (2.42) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    381131 5mrl:A (2.42) BS02 F2M 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    381132 5mrl:B (2.42) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    381133 5mrl:B (2.42) BS02 F2M 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    381134 5mrm:A (1.8) BS01 Q9T 2.7.7.60 GO:0003824 ... P69834 28686408 MOAD: ic50=9.3uM
    381135 5mro:A (1.8) BS01 Q9P 2.7.7.60 GO:0003824 ... P69834 28686408 MOAD: ic50=2uM
    BindingDB: IC50=140nM
    381136 5mrp:A (1.9) BS01 6BC 2.7.7.60 GO:0003824 ... P69834 28686408 MOAD: ic50=3uM
    BindingDB: IC50=35nM
    381137 5mrs:A (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    381138 5mrs:B (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    381139 5mrs:C (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    381140 5mrs:D (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    381141 5mru:A (2.55) BS01 TDC ? GO:0000976 ... P03038 N/A
    381142 5mru:A (2.55) BS02 MG ? GO:0000976 ... P03038 N/A
    381143 5mrv:A (1.854) BS01 ZN 3.4.17.- GO:0004180 ... Q8IVL8 29636417
    381144 5mrv:B (1.854) BS01 ZN 3.4.17.- GO:0004180 ... Q8IVL8 29636417
    381145 5mrw:A (2.9) BS01 peptide ? GO:0005515 ... P03959 28636601
    381146 5mrw:A (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    381147 5mrw:B (2.9) BS01 peptide 7.2.2.6 GO:0000166 ... P03960 28636601
    381148 5mrw:E (2.9) BS01 peptide ? GO:0005515 ... P03959 28636601
    381149 5mrw:E (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    381150 5mrw:F (2.9) BS01 peptide 7.2.2.6 GO:0000166 ... P03960 28636601
    381151 5mrw:I (2.9) BS01 peptide ? GO:0005515 ... P03959 28636601
    381152 5mrw:I (2.9) BS02 K ? GO:0005515 ... P03959 28636601
    381153 5mrw:J (2.9) BS01 peptide 7.2.2.6 GO:0000166 ... P03960 28636601
    381154 5ms0:C (9.8) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 28452979
    381155 5ms0:C (9.8) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 28452979
    381156 5ms0:D (9.8) BS01 rna 2.7.7.6 GO:0000287 ... P0A8T7 28452979
    381157 5ms0:D (9.8) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 28452979
    381158 5ms0:D (9.8) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 28452979
    381159 5ms0:D (9.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 28452979
    381160 5ms0:F (9.8) BS01 dna ? GO:0005515 ... P0AFG0 28452979
    381161 5ms0:L (9.8) BS01 rna ? GO:0003723 ... P0A780 28452979
    381162 5ms0:M (9.8) BS01 rna ? GO:0000166 ... P0AFF6 28452979
    381163 5ms0:N (9.8) BS01 rna ? N/A P03045 28452979
    381164 5ms3:A (2.3) BS01 CA 3.4.21.118 GO:0004252 ... O60259 N/A
    381165 5ms4:A (2.1) BS01 peptide 3.4.21.118 GO:0004252 ... O60259 30013126
    381166 5ms4:A (2.1) BS02 CA 3.4.21.118 GO:0004252 ... O60259 30013126
    381167 5ms4:B (2.1) BS01 peptide 3.4.21.118 GO:0004252 ... O60259 30013126
    381168 5ms4:B (2.1) BS02 CA 3.4.21.118 GO:0004252 ... O60259 30013126
    381169 5ms4:C (2.1) BS01 peptide 3.4.21.118 GO:0004252 ... O60259 30013126
    381170 5ms4:C (2.1) BS02 CA 3.4.21.118 GO:0004252 ... O60259 30013126
    381171 5ms4:D (2.1) BS01 peptide 3.4.21.118 GO:0004252 ... O60259 30013126
    381172 5ms4:D (2.1) BS02 CA 3.4.21.118 GO:0004252 ... O60259 30013126
    381173 5ms9:A (-1.00) BS01 CA ? GO:0005509 ... P35555 28669633
    381174 5msa:A (1.2) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    381175 5msa:A (1.2) BS02 3TV 4.2.1.1 GO:0004089 ... O43570 N/A BindingDB: Kd=19nM, koff=0.025s-1, kon=1300000M-1-s-1
    381176 5msa:B (1.2) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    381177 5msa:B (1.2) BS02 3TV 4.2.1.1 GO:0004089 ... O43570 N/A BindingDB: Kd=19nM, koff=0.025s-1, kon=1300000M-1-s-1
    381178 5msa:C (1.2) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    381179 5msa:C (1.2) BS02 3TV 4.2.1.1 GO:0004089 ... O43570 N/A BindingDB: Kd=19nM, koff=0.025s-1, kon=1300000M-1-s-1
    381180 5msa:D (1.2) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    381181 5msa:D (1.2) BS02 3TV 4.2.1.1 GO:0004089 ... O43570 N/A BindingDB: Kd=19nM, koff=0.025s-1, kon=1300000M-1-s-1
    381182 5msb:A (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    381183 5msb:A (1.3) BS02 V13 4.2.1.1 GO:0004089 ... O43570 29503769 MOAD: Kd=35nM
    BindingDB: Kd=250nM
    381184 5msb:B (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    381185 5msb:B (1.3) BS02 V13 4.2.1.1 GO:0004089 ... O43570 29503769 MOAD: Kd=35nM
    BindingDB: Kd=250nM
    381186 5msb:C (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    381187 5msb:C (1.3) BS02 V13 4.2.1.1 GO:0004089 ... O43570 29503769 MOAD: Kd=35nM
    BindingDB: Kd=250nM
    381188 5msb:D (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    381189 5msb:D (1.3) BS02 V13 4.2.1.1 GO:0004089 ... O43570 29503769 MOAD: Kd=35nM
    BindingDB: Kd=250nM
    381190 5msc:A (1.85) BS01 AMP 1.2.1.-
    1.2.1.30
    GO:0001676 ... Q6RKB1 28719588
    381191 5msd:A (1.71) BS01 AMP 1.2.1.-
    1.2.1.30
    GO:0001676 ... Q6RKB1 28719588
    381192 5msf:A (2.8) BS01 rna ? GO:0003723 ... P03612 9808042
    381193 5msf:C (2.8) BS01 rna ? GO:0003723 ... P03612 9808042
    381194 5msg:A (3.8) BS01 rna 3.1.-.- GO:0003723 ... Q5V8Z9 28126917
    381195 5msg:A (3.8) BS02 rna 3.1.-.- GO:0003723 ... Q5V8Z9 28126917
    381196 5msg:B (3.8) BS01 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 28126917
    381197 5msg:B (3.8) BS02 rna 2.7.7.48 GO:0000166 ... Q5V8Y6 28126917
    381198 5msg:C (3.8) BS01 rna ? GO:0001172 ... Q5V8X3 28126917
    381199 5msg:C (3.8) BS02 rna ? GO:0001172 ... Q5V8X3 28126917
    381200 5msl:A (-1.00) BS01 ZN ? GO:0005737 ... P37553 28598017

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).