SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    383601 5nb4:V (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383602 5nb4:V (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383603 5nb4:V (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383604 5nb4:W (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383605 5nb4:W (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383606 5nb4:W (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383607 5nb4:W (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383608 5nb4:X (1.14) BS01 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383609 5nb4:X (1.14) BS02 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383610 5nb4:X (1.14) BS03 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383611 5nb4:X (1.14) BS04 PEB ? GO:0009579 ... A0A0E4G455 28918447
    383612 5nb6:A (1.75) BS01 8S2 3.4.21.46 GO:0004252 ... P00746 28621538 MOAD: ic50=0.5uM
    BindingDB: IC50=667nM
    383613 5nb7:A (1.33) BS01 8NQ 3.4.21.46 GO:0004252 ... P00746 28621538 MOAD: ic50=0.006uM
    BindingDB: IC50=9nM
    383614 5nba:A (1.87) BS01 8S5 3.4.21.46 GO:0004252 ... P00746 28621538 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    383615 5nbc:A (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    383616 5nbc:A (1.699) BS02 ZN ? GO:0000976 ... Q5NIN6 30271974
    383617 5nbc:B (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    383618 5nbc:B (1.699) BS02 ZN ? GO:0000976 ... Q5NIN6 30271974
    383619 5nbc:C (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    383620 5nbc:C (1.699) BS02 ZN ? GO:0000976 ... Q5NIN6 30271974
    383621 5nbc:D (1.699) BS01 MN ? GO:0000976 ... Q5NIN6 30271974
    383622 5nbc:D (1.699) BS02 ZN ? GO:0000976 ... Q5NIN6 30271974
    383623 5nbd:A (3.9) BS01 ADP 7.5.2.5 GO:0005524 ... Q0P9C4 28422165
    383624 5nbd:B (3.9) BS01 ADP 7.5.2.5 GO:0005524 ... Q0P9C4 28422165
    383625 5nbf:A (1.15) BS01 8S8 ? N/A Q8N8S7 33184177
    383626 5nbj:A (1.266) BS01 RE 3.2.1.17 GO:0003796 ... P00698 28512575
    383627 5nbk:A (2.6) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    383628 5nbk:A (2.6) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    383629 5nbk:C (2.6) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    383630 5nbk:C (2.6) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30466711
    383631 5nbl:A (2.8) BS01 ATP ? GO:0000785 ... P80428 30177756
    383632 5nbl:B (2.8) BS01 ATP ? GO:0000785 ... P80428 30177756
    383633 5nbl:C (2.8) BS01 peptide 3.6.4.- GO:0000011 ... P60010 30177756
    383634 5nbl:D (2.8) BS01 peptide 3.6.4.- GO:0000011 ... P60010 30177756
    383635 5nbm:A (3.4) BS01 ATP ? GO:0000785 ... P80428 30177756
    383636 5nbm:B (3.4) BS01 ATP ? GO:0000785 ... P80428 30177756
    383637 5nbm:C (3.4) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    383638 5nbm:D (3.4) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    383639 5nbn:A (4.0) BS01 ATP ? GO:0000785 ... P80428 30177756
    383640 5nbn:B (4.0) BS01 ATP ? GO:0000785 ... P80428 30177756
    383641 5nbn:C (4.0) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    383642 5nbn:C (4.0) BS02 LAR 3.6.4.- GO:0000011 ... P60010 30177756 BindingDB: IC50=70nM
    383643 5nbn:D (4.0) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    383644 5nbn:D (4.0) BS02 LAR 3.6.4.- GO:0000011 ... P60010 30177756 BindingDB: IC50=70nM
    383645 5nbp:A (1.8) BS01 BGC N/A GO:0004553 ... N/A 29020628
    383646 5nbp:A (1.8) BS02 BGC N/A GO:0004553 ... N/A 29020628
    383647 5nbp:A (1.8) BS03 BGC N/A GO:0004553 ... N/A 29020628
    383648 5nbp:A (1.8) BS04 CA N/A GO:0004553 ... N/A 29020628
    383649 5nbp:B (1.8) BS01 BGC N/A GO:0004553 ... N/A 29020628
    383650 5nbp:B (1.8) BS02 BGC N/A GO:0004553 ... N/A 29020628
    383651 5nbp:B (1.8) BS03 BGC N/A GO:0004553 ... N/A 29020628
    383652 5nbp:B (1.8) BS04 CA N/A GO:0004553 ... N/A 29020628
    383653 5nbs:A (2.25) BS01 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383654 5nbs:A (2.25) BS02 BMA 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383655 5nbs:A (2.25) BS03 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383656 5nbs:A (2.25) BS04 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383657 5nbs:A (2.25) BS05 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383658 5nbs:A (2.25) BS06 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383659 5nbs:A (2.25) BS07 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383660 5nbs:A (2.25) BS08 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383661 5nbs:B (2.25) BS01 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383662 5nbs:B (2.25) BS02 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383663 5nbs:B (2.25) BS03 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383664 5nbs:B (2.25) BS04 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383665 5nbs:B (2.25) BS05 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383666 5nbs:B (2.25) BS06 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383667 5nbs:B (2.25) BS07 MAN 3.2.1.21 GO:0000272 ... Q7RWP2 30511673
    383668 5nbw:A (2.4) BS01 8SK N/A N/A N/A 28603847
    383669 5nbw:B (2.4) BS01 8SK N/A N/A N/A 28603847
    383670 5nbw:H (2.4) BS01 8SK N/A N/A N/A 28603847
    383671 5nbw:L (2.4) BS01 8SK N/A N/A N/A 28603847
    383672 5nbx:A (1.65) BS01 peptide ? N/A Q8N8S7 33184177
    383673 5nbx:A (1.65) BS02 peptide ? N/A Q8N8S7 33184177
    383674 5nbx:B (1.65) BS01 peptide ? N/A Q8N8S7 33184177
    383675 5nbx:B (1.65) BS02 peptide ? N/A Q8N8S7 33184177
    383676 5nby:A (2.5) BS01 FMN N/A GO:0009190 ... N/A 28336405
    383677 5nc0:A (0.91) BS01 HEC ? GO:0005506 ... P00138 29053273
    383678 5nc0:A (0.91) BS02 NO2 ? GO:0005506 ... P00138 29053273
    383679 5nc0:A (0.91) BS03 NO2 ? GO:0005506 ... P00138 29053273
    383680 5nc2:A (1.58) BS01 peptide ? N/A Q8N8S7 33184177
    383681 5nc2:B (1.58) BS01 peptide ? N/A Q8N8S7 33184177
    383682 5nc3:A (2.57) BS01 8SW ? GO:0006826 ... Q05098 35881068
    383683 5nc4:A (2.8) BS01 8T2 ? GO:0006826 ... Q05098 31413254
    383684 5nc5:B (3.2) BS01 PUY ? GO:0005515 ... P31224 28355133
    383685 5nc6:A (2.8) BS01 ZN 3.5.1.104 GO:0005975 ... Q81EJ6 29257674
    383686 5nc6:B (2.8) BS01 8SQ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383687 5nc6:B (2.8) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383688 5nc6:C (2.8) BS01 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383689 5nc6:D (2.8) BS01 8SQ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383690 5nc6:D (2.8) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383691 5nc7:A (2.7) BS01 peptide ? N/A Q8N8S7 33184177
    383692 5nc7:A (2.7) BS02 peptide ? N/A Q8N8S7 33184177
    383693 5nc7:A (2.7) BS03 peptide ? N/A Q8N8S7 33184177
    383694 5nc7:B (2.7) BS01 peptide ? N/A Q8N8S7 33184177
    383695 5nc7:B (2.7) BS02 peptide ? N/A Q8N8S7 33184177
    383696 5nc7:C (2.7) BS01 peptide ? N/A Q8N8S7 33184177
    383697 5nc7:C (2.7) BS02 peptide ? N/A Q8N8S7 33184177
    383698 5nc7:D (2.7) BS01 peptide ? N/A Q8N8S7 33184177
    383699 5nc7:D (2.7) BS02 peptide ? N/A Q8N8S7 33184177
    383700 5nc8:A (3.09) BS01 AMP ? GO:0005886 ... Q12SB3 28656748
    383701 5nc8:B (3.09) BS01 AMP ? GO:0005886 ... Q12SB3 28656748
    383702 5nc9:A (2.44) BS01 8SZ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383703 5nc9:A (2.44) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383704 5nc9:B (2.44) BS01 8SZ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383705 5nc9:B (2.44) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383706 5nc9:C (2.44) BS01 8SZ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383707 5nc9:C (2.44) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383708 5nc9:D (2.44) BS01 8SZ 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383709 5nc9:D (2.44) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383710 5ncb:A (1.44) BS01 HEM ? GO:0004497 ... A0A076MY51 29950589
    383711 5ncb:A (1.44) BS02 JZ3 ? GO:0004497 ... A0A076MY51 29950589
    383712 5ncc:A (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383713 5ncc:B (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383714 5ncc:C (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383715 5ncc:D (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383716 5ncc:E (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383717 5ncc:F (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    383718 5ncd:A (2.447) BS01 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383719 5ncd:B (2.447) BS01 AHL 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383720 5ncd:B (2.447) BS02 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383721 5ncd:C (2.447) BS01 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383722 5ncd:D (2.447) BS01 ZN 3.5.1.104 GO:0005886 ... Q81EJ6 29257674
    383723 5ncf:A (1.4) BS01 8T5 ? N/A Q8N8S7 33184177 MOAD: Kd=10uM
    383724 5ncf:B (1.4) BS01 8T5 ? N/A Q8N8S7 33184177 MOAD: Kd=10uM
    383725 5ncg:A (1.02) BS01 8TB ? N/A Q8N8S7 33184177
    383726 5ncg:A (1.02) BS02 8TB ? N/A Q8N8S7 33184177
    383727 5ncg:A (1.02) BS03 8TB ? N/A Q8N8S7 33184177
    383728 5ncg:B (1.02) BS01 8TB ? N/A Q8N8S7 33184177
    383729 5ncg:B (1.02) BS02 8TB ? N/A Q8N8S7 33184177
    383730 5nci:A (1.755) BS01 CO ? GO:0016491 ... A0A0E3URV8 29163906
    383731 5nci:A (1.755) BS02 AKG ? GO:0016491 ... A0A0E3URV8 29163906
    383732 5nci:A (1.755) BS03 LEU ? GO:0016491 ... A0A0E3URV8 29163906
    383733 5nci:B (1.755) BS01 CO ? GO:0016491 ... A0A0E3URV8 29163906
    383734 5nci:B (1.755) BS02 AKG ? GO:0016491 ... A0A0E3URV8 29163906
    383735 5nci:B (1.755) BS03 LEU ? GO:0016491 ... A0A0E3URV8 29163906
    383736 5ncj:A (1.529) BS01 MN ? GO:0016491 ... A0A0E3URV8 29163906
    383737 5ncj:A (1.529) BS02 HL5 ? GO:0016491 ... A0A0E3URV8 29163906
    383738 5ncj:B (1.529) BS01 MN ? GO:0016491 ... A0A0E3URV8 29163906
    383739 5ncj:B (1.529) BS02 HL5 ? GO:0016491 ... A0A0E3URV8 29163906
    383740 5ncl:A (3.15) BS01 peptide 2.7.11.1 GO:0004672 ... P53894 32250593
    383741 5ncl:A (3.15) BS02 ANP 2.7.11.1 GO:0004672 ... P53894 32250593
    383742 5ncm:A (2.8) BS01 ZN ? N/A P43563 32250593
    383743 5ncn:A (3.501) BS01 ZN ? N/A P40484 32250593
    383744 5nco:C (4.8) BS01 rna ? GO:0000027 ... P60422 28524878
    383745 5nco:D (4.8) BS01 rna ? GO:0000027 ... P60438 28524878
    383746 5nco:E (4.8) BS01 rna ? GO:0001070 ... P60723 28524878
    383747 5nco:F (4.8) BS01 rna ? GO:0000027 ... P62399 28524878
    383748 5nco:F (4.8) BS02 rna ? GO:0000027 ... P62399 28524878
    383749 5nco:G (4.8) BS01 rna ? GO:0000027 ... P0AG55 28524878
    383750 5nco:H (4.8) BS01 rna ? GO:0002181 ... P0A7R1 28524878
    383751 5nco:I (4.8) BS01 rna ? GO:0003735 ... P0A7J3 28524878
    383752 5nco:J (4.8) BS01 rna ? GO:0000027 ... P0A7J7 28524878
    383753 5nco:K (4.8) BS01 rna ? GO:0002181 ... P0AA10 28524878
    383754 5nco:L (4.8) BS01 rna ? GO:0002181 ... P0ADY3 28524878
    383755 5nco:M (4.8) BS01 rna ? GO:0002181 ... P02413 28524878
    383756 5nco:N (4.8) BS01 rna ? GO:0000027 ... P0ADY7 28524878
    383757 5nco:N (4.8) BS02 rna ? GO:0000027 ... P0ADY7 28524878
    383758 5nco:O (4.8) BS01 rna ? GO:0000027 ... P0AG44 28524878
    383759 5nco:P (4.8) BS01 rna ? GO:0002181 ... P0C018 28524878
    383760 5nco:P (4.8) BS02 rna ? GO:0002181 ... P0C018 28524878
    383761 5nco:Q (4.8) BS01 rna ? GO:0000027 ... P0A7K6 28524878
    383762 5nco:R (4.8) BS01 rna ? GO:0000027 ... P0A7L3 28524878
    383763 5nco:S (4.8) BS01 rna ? GO:0002181 ... P0AG48 28524878
    383764 5nco:T (4.8) BS01 rna ? GO:0002181 ... P61175 28524878
    383765 5nco:U (4.8) BS01 rna ? GO:0000027 ... P0ADZ0 28524878
    383766 5nco:V (4.8) BS01 rna ? GO:0000027 ... P60624 28524878
    383767 5nco:W (4.8) BS01 rna ? GO:0000027 ... P68919 28524878
    383768 5nco:X (4.8) BS01 rna ? GO:0003735 ... P0A7L8 28524878
    383769 5nco:X (4.8) BS02 rna ? GO:0003735 ... P0A7L8 28524878
    383770 5nco:Y (4.8) BS01 rna ? GO:0000027 ... P0A7M2 28524878
    383771 5nco:Z (4.8) BS01 rna ? GO:0000027 ... P0A7M6 28524878
    383772 5nco:a (4.8) BS01 rna ? GO:0000027 ... P0AG51 28524878
    383773 5nco:b (4.8) BS01 rna ? GO:0000027 ... P0A7N4 28524878
    383774 5nco:c (4.8) BS01 rna ? GO:0000027 ... P0A7N9 28524878
    383775 5nco:d (4.8) BS01 rna ? GO:0002181 ... P0A7P5 28524878
    383776 5nco:e (4.8) BS01 rna ? GO:0002181 ... P0A7Q1 28524878
    383777 5nco:f (4.8) BS01 rna ? GO:0002181 ... P0A7Q6 28524878
    383778 5nco:f (4.8) BS02 ZN ? GO:0002181 ... P0A7Q6 28524878
    383779 5nco:g (4.8) BS01 rna ? GO:0005048 ... P0AGA2 28524878
    383780 5nco:i (4.8) BS01 rna 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383781 5nco:i (4.8) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383782 5nco:i (4.8) BS03 peptide 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383783 5nco:i (4.8) BS04 ALF 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383784 5nco:i (4.8) BS05 GDP 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383785 5nco:i (4.8) BS06 GDP 3.6.5.4 GO:0003723 ... P0AGD7 28524878
    383786 5nco:l (4.8) BS01 rna 3.6.5.4 GO:0005525 ... P10121 28524878
    383787 5nco:l (4.8) BS02 GDP 3.6.5.4 GO:0005525 ... P10121 28524878
    383788 5nco:l (4.8) BS03 ALF 3.6.5.4 GO:0005525 ... P10121 28524878
    383789 5nco:l (4.8) BS04 GDP 3.6.5.4 GO:0005525 ... P10121 28524878
    383790 5ncp:A (1.65) BS01 EG5 ? N/A Q8N8S7 33184177
    383791 5ncq:A (3.0) BS01 128 7.2.2.10 GO:0000166 ... P04191 29293507
    383792 5ncq:A (3.0) BS02 8T8 7.2.2.10 GO:0000166 ... P04191 29293507
    383793 5ncr:A (1.89) BS01 PO4 3.1.3.48 GO:0004721 ... Q6TW43 28754374
    383794 5ncr:B (1.89) BS01 PO4 3.1.3.48 GO:0004721 ... Q6TW43 28754374
    383795 5nct:A (1.6) BS01 SER ? GO:0004867 ... G8UQY8 28512127
    383796 5ncv:A (1.5) BS01 HEC ? GO:0005515 ... P00044 N/A
    383797 5ncv:A (1.5) BS02 8TE ? GO:0005515 ... P00044 N/A
    383798 5ncv:A (1.5) BS03 8TE ? GO:0005515 ... P00044 N/A
    383799 5ncv:B (1.5) BS01 HEC ? GO:0005515 ... P00044 N/A
    383800 5ncv:B (1.5) BS02 8TE ? GO:0005515 ... P00044 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).