SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    383801 5ncw:A (1.5) BS01 ZN ? GO:0004867 ... G8UQY8 28512127
    383802 5ncx:A () BS01 K35 N/A N/A N/A N/A
    383803 5ncx:A () BS02 CA N/A N/A N/A N/A
    383804 5ncy:A (1.9) BS01 8TK 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 28520415 MOAD: ic50=0.4nM
    383805 5ncz:A (1.94) BS01 8TN 2.7.1.137
    2.7.1.153
    GO:0001782 ... O35904 28520415 MOAD: ic50=0.79nM
    383806 5nd0:A (1.45) BS01 peptide ? N/A Q8N8S7 33184177
    383807 5nd0:B (1.45) BS01 peptide ? N/A Q8N8S7 33184177
    383808 5nd2:A (5.8) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28826477
    383809 5nd2:B (5.8) BS01 GDP ? GO:0000226 ... Q6B856 28826477
    383810 5nd2:B (5.8) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    383811 5nd2:C (5.8) BS01 ADP ? GO:0003777 ... P97329 28826477
    383812 5nd3:A (6.1) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28826477
    383813 5nd3:B (6.1) BS01 GDP ? GO:0000226 ... Q6B856 28826477
    383814 5nd3:B (6.1) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    383815 5nd4:A (4.4) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28826477
    383816 5nd4:B (4.4) BS01 GDP ? GO:0000226 ... Q6B856 28826477
    383817 5nd4:B (4.4) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    383818 5nd4:C (4.4) BS01 ADP ? GO:0003777 ... P97329 28826477
    383819 5nd4:C (4.4) BS02 MG ? GO:0003777 ... P97329 28826477
    383820 5nd4:C (4.4) BS03 ALF ? GO:0003777 ... P97329 28826477
    383821 5nd5:A (1.74) BS01 MG 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383822 5nd5:A (1.74) BS02 TPP 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383823 5nd5:A (1.74) BS03 TPP 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383824 5nd5:B (1.74) BS01 TPP 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383825 5nd5:B (1.74) BS02 MG 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383826 5nd5:B (1.74) BS03 TPP 2.2.1.1 GO:0004802 ... A8IAN1 28552632
    383827 5nd7:A (7.9) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28826477
    383828 5nd7:A (7.9) BS02 MG 3.6.5.- GO:0000226 ... P81947 28826477
    383829 5nd7:B (7.9) BS01 GDP ? GO:0000226 ... Q6B856 28826477
    383830 5nd7:B (7.9) BS02 TA1 ? GO:0000226 ... Q6B856 28826477
    383831 5nd7:C (7.9) BS01 ANP ? GO:0003777 ... P97329 28826477
    383832 5nd8:0 (3.7) BS01 rna ? GO:0003735 ... Q2FZ60 28645916
    383833 5nd8:1 (3.7) BS01 rna ? GO:0003735 ... Q2FW14 28645916
    383834 5nd8:2 (3.7) BS01 rna ? GO:0003735 ... P0A0G2 28645916
    383835 5nd8:3 (3.7) BS01 rna ? GO:0003735 ... Q2FWD8 28645916
    383836 5nd8:4 (3.7) BS01 rna ? GO:0003735 ... Q2FZF1 28645916
    383837 5nd8:6 (3.7) BS01 rna ? GO:0003735 ... Q2FUQ0 28645916
    383838 5nd8:7 (3.7) BS01 rna ? GO:0003735 ... Q2FXQ0 28645916
    383839 5nd8:8 (3.7) BS01 rna ? GO:0003735 ... Q2FW29 28645916
    383840 5nd8:D (3.7) BS01 rna ? GO:0002181 ... P60430 28645916
    383841 5nd8:E (3.7) BS01 rna ? GO:0003735 ... Q2FW06 28645916
    383842 5nd8:F (3.7) BS01 rna ? GO:0003735 ... Q2FW07 28645916
    383843 5nd8:G (3.7) BS01 rna ? GO:0000049 ... Q2FW18 28645916
    383844 5nd8:G (3.7) BS02 rna ? GO:0000049 ... Q2FW18 28645916
    383845 5nd8:H (3.7) BS01 rna ? GO:0002181 ... Q2FW21 28645916
    383846 5nd8:M (3.7) BS01 rna ? GO:0003729 ... Q2FW38 28645916
    383847 5nd8:N (3.7) BS01 rna ? GO:0003735 ... Q2FW16 28645916
    383848 5nd8:N (3.7) BS02 rna ? GO:0003735 ... Q2FW16 28645916
    383849 5nd8:O (3.7) BS01 rna ? GO:0003735 ... P0A0F8 28645916
    383850 5nd8:P (3.7) BS01 rna ? GO:0000049 ... Q2FW13 28645916
    383851 5nd8:Q (3.7) BS01 rna ? GO:0003735 ... Q2FW33 28645916
    383852 5nd8:R (3.7) BS01 rna ? GO:0003735 ... Q2FW22 28645916
    383853 5nd8:R (3.7) BS02 rna ? GO:0003735 ... Q2FW22 28645916
    383854 5nd8:S (3.7) BS01 rna ? GO:0003735 ... Q2FZ42 28645916
    383855 5nd8:S (3.7) BS02 rna ? GO:0003735 ... Q2FZ42 28645916
    383856 5nd8:T (3.7) BS01 rna ? GO:0000027 ... Q2FXQ1 28645916
    383857 5nd8:U (3.7) BS01 rna ? GO:0003723 ... Q2FXS8 28645916
    383858 5nd8:V (3.7) BS01 rna ? GO:0003735 ... Q2FW11 28645916
    383859 5nd8:W (3.7) BS01 rna ? GO:0003735 ... Q2FW08 28645916
    383860 5nd8:X (3.7) BS01 rna ? GO:0003723 ... Q2FW17 28645916
    383861 5nd8:Y (3.7) BS01 rna ? GO:0003723 ... Q2G0S0 28645916
    383862 5nd8:Z (3.7) BS01 rna ? GO:0003735 ... Q2FXT0 28645916
    383863 5nd8:Z (3.7) BS02 rna ? GO:0003735 ... Q2FXT0 28645916
    383864 5nd8:b (3.7) BS01 rna ? GO:0003735 ... Q2FZ25 28645916
    383865 5nd8:c (3.7) BS01 rna ? GO:0003676 ... Q2FW12 28645916
    383866 5nd8:d (3.7) BS01 rna ? GO:0003723 ... Q2FXK6 28645916
    383867 5nd8:e (3.7) BS01 rna ? GO:0003723 ... Q2FW23 28645916
    383868 5nd8:f (3.7) BS01 rna ? GO:0003735 ... Q2G113 28645916
    383869 5nd8:g (3.7) BS01 rna ? GO:0000028 ... P48940 28645916
    383870 5nd8:h (3.7) BS01 rna ? GO:0003735 ... Q2FW20 28645916
    383871 5nd8:i (3.7) BS01 rna ? GO:0003723 ... Q2FW39 28645916
    383872 5nd8:j (3.7) BS01 rna ? GO:0000049 ... A7X5G6 28645916
    383873 5nd8:k (3.7) BS01 rna ? GO:0003735 ... Q2FW31 28645916
    383874 5nd8:l (3.7) BS01 rna ? GO:0000049 ... P0A0H0 28645916
    383875 5nd8:m (3.7) BS01 rna ? GO:0000049 ... Q2FW30 28645916
    383876 5nd8:n (3.7) BS01 rna ? GO:0003735 ... Q2FW19 28645916
    383877 5nd8:o (3.7) BS01 rna ? GO:0003735 ... Q2G2Q1 28645916
    383878 5nd8:o (3.7) BS02 rna ? GO:0003735 ... Q2G2Q1 28645916
    383879 5nd8:p (3.7) BS01 rna ? GO:0003735 ... Q2FZ45 28645916
    383880 5nd8:q (3.7) BS01 rna ? GO:0003735 ... Q2FW15 28645916
    383881 5nd8:r (3.7) BS01 rna ? GO:0003735 ... Q2G111 28645916
    383882 5nd8:s (3.7) BS01 rna ? GO:0000028 ... Q2FW10 28645916
    383883 5nd8:t (3.7) BS01 rna ? GO:0003723 ... Q2FXY6 28645916
    383884 5nd8:u (3.7) BS01 rna ? GO:0003735 ... Q2FXZ7 28645916
    383885 5nd8:v (3.7) BS01 rna ? GO:0005737 ... Q2G055 28645916
    383886 5nd9:0 (3.7) BS01 rna ? GO:0003735 ... Q2FZ60 28645916
    383887 5nd9:1 (3.7) BS01 rna ? GO:0003735 ... Q2FW14 28645916
    383888 5nd9:2 (3.7) BS01 rna ? GO:0003735 ... P0A0G2 28645916
    383889 5nd9:3 (3.7) BS01 rna ? GO:0003735 ... Q2FWD8 28645916
    383890 5nd9:4 (3.7) BS01 rna ? GO:0003735 ... Q2FZF1 28645916
    383891 5nd9:6 (3.7) BS01 rna ? GO:0003735 ... Q2FUQ0 28645916
    383892 5nd9:7 (3.7) BS01 rna ? GO:0003735 ... Q2FXQ0 28645916
    383893 5nd9:8 (3.7) BS01 rna ? GO:0003735 ... Q2FW29 28645916
    383894 5nd9:D (3.7) BS01 rna ? GO:0002181 ... P60430 28645916
    383895 5nd9:D (3.7) BS02 rna ? GO:0002181 ... P60430 28645916
    383896 5nd9:E (3.7) BS01 rna ? GO:0003735 ... Q2FW06 28645916
    383897 5nd9:F (3.7) BS01 rna ? GO:0003735 ... Q2FW07 28645916
    383898 5nd9:G (3.7) BS01 rna ? GO:0000049 ... Q2FW18 28645916
    383899 5nd9:G (3.7) BS02 rna ? GO:0000049 ... Q2FW18 28645916
    383900 5nd9:H (3.7) BS01 rna ? GO:0002181 ... Q2FW21 28645916
    383901 5nd9:M (3.7) BS01 rna ? GO:0003729 ... Q2FW38 28645916
    383902 5nd9:N (3.7) BS01 rna ? GO:0003735 ... Q2FW16 28645916
    383903 5nd9:N (3.7) BS02 rna ? GO:0003735 ... Q2FW16 28645916
    383904 5nd9:O (3.7) BS01 rna ? GO:0003735 ... P0A0F8 28645916
    383905 5nd9:P (3.7) BS01 rna ? GO:0000049 ... Q2FW13 28645916
    383906 5nd9:Q (3.7) BS01 rna ? GO:0003735 ... Q2FW33 28645916
    383907 5nd9:R (3.7) BS01 rna ? GO:0003735 ... Q2FW22 28645916
    383908 5nd9:R (3.7) BS02 rna ? GO:0003735 ... Q2FW22 28645916
    383909 5nd9:S (3.7) BS01 rna ? GO:0003735 ... Q2FZ42 28645916
    383910 5nd9:T (3.7) BS01 rna ? GO:0000027 ... Q2FXQ1 28645916
    383911 5nd9:U (3.7) BS01 rna ? GO:0003723 ... Q2FXS8 28645916
    383912 5nd9:V (3.7) BS01 rna ? GO:0003735 ... Q2FW11 28645916
    383913 5nd9:W (3.7) BS01 rna ? GO:0003735 ... Q2FW08 28645916
    383914 5nd9:X (3.7) BS01 rna ? GO:0003723 ... Q2FW17 28645916
    383915 5nd9:Y (3.7) BS01 rna ? GO:0003723 ... Q2G0S0 28645916
    383916 5nd9:Y (3.7) BS02 rna ? GO:0003723 ... Q2G0S0 28645916
    383917 5nd9:Z (3.7) BS01 rna ? GO:0003735 ... Q2FXT0 28645916
    383918 5nd9:Z (3.7) BS02 rna ? GO:0003735 ... Q2FXT0 28645916
    383919 5nd9:b (3.7) BS01 rna ? GO:0003735 ... Q2FZ25 28645916
    383920 5nd9:c (3.7) BS01 rna ? GO:0003676 ... Q2FW12 28645916
    383921 5nd9:d (3.7) BS01 rna ? GO:0003723 ... Q2FXK6 28645916
    383922 5nd9:e (3.7) BS01 rna ? GO:0003723 ... Q2FW23 28645916
    383923 5nd9:f (3.7) BS01 rna ? GO:0003735 ... Q2G113 28645916
    383924 5nd9:g (3.7) BS01 rna ? GO:0000028 ... P48940 28645916
    383925 5nd9:h (3.7) BS01 rna ? GO:0003735 ... Q2FW20 28645916
    383926 5nd9:i (3.7) BS01 rna ? GO:0003723 ... Q2FW39 28645916
    383927 5nd9:j (3.7) BS01 rna ? GO:0000049 ... Q931G5 28645916
    383928 5nd9:k (3.7) BS01 rna ? GO:0003735 ... Q2FW31 28645916
    383929 5nd9:l (3.7) BS01 rna ? GO:0000049 ... P0A0H0 28645916
    383930 5nd9:m (3.7) BS01 rna ? GO:0000049 ... Q2FW30 28645916
    383931 5nd9:n (3.7) BS01 rna ? GO:0003735 ... Q2FW19 28645916
    383932 5nd9:o (3.7) BS01 rna ? GO:0003735 ... Q2G2Q1 28645916
    383933 5nd9:o (3.7) BS02 rna ? GO:0003735 ... Q2G2Q1 28645916
    383934 5nd9:p (3.7) BS01 rna ? GO:0003735 ... Q2FZ45 28645916
    383935 5nd9:q (3.7) BS01 rna ? GO:0003735 ... Q2FW15 28645916
    383936 5nd9:r (3.7) BS01 rna ? GO:0003735 ... Q2G111 28645916
    383937 5nd9:s (3.7) BS01 rna ? GO:0000028 ... Q2FW10 28645916
    383938 5nd9:t (3.7) BS01 rna ? GO:0003723 ... Q2FXY6 28645916
    383939 5nd9:u (3.7) BS01 rna ? GO:0003735 ... Q2FXZ7 28645916
    383940 5nd9:v (3.7) BS01 rna ? GO:0005737 ... Q2G055 28645916
    383941 5ndb:A (2.38) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383942 5ndb:A (2.38) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383943 5ndb:A (2.38) BS03 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383944 5ndb:A (2.38) BS04 8TW 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383945 5ndb:B (2.38) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383946 5ndb:B (2.38) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383947 5ndb:B (2.38) BS03 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383948 5ndb:B (2.38) BS04 8TW 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383949 5ndc:A (2.3) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 28674417
    383950 5ndc:A (2.3) BS02 HEM 7.1.1.9 GO:0004129 ... Q5SJ79 28674417
    383951 5ndc:A (2.3) BS03 HAS 7.1.1.9 GO:0004129 ... Q5SJ79 28674417
    383952 5ndc:B (2.3) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 28674417
    383953 5ndd:A (2.801) BS01 8TZ 3.2.1.17 GO:0003796 ... P00720
    P0ABE7
    P55085
    28445455
    383954 5nde:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383955 5nde:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383956 5nde:A (1.7) BS03 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383957 5nde:A (1.7) BS04 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383958 5nde:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383959 5nde:B (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 29250863
    383960 5ndf:A (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383961 5ndf:A (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383962 5ndf:A (2.3) BS03 LU2 2.4.1.41 GO:0000139 ... Q10471 29061849 MOAD: Ki=1.4uM
    383963 5ndf:B (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383964 5ndf:B (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383965 5ndf:B (2.3) BS03 LU2 2.4.1.41 GO:0000139 ... Q10471 29061849 MOAD: Ki=1.4uM
    383966 5ndf:C (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383967 5ndf:C (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383968 5ndf:D (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383969 5ndf:D (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383970 5ndf:D (2.3) BS03 LU2 2.4.1.41 GO:0000139 ... Q10471 29061849 MOAD: Ki=1.4uM
    383971 5ndf:E (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383972 5ndf:E (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383973 5ndf:F (2.3) BS01 MN 2.4.1.41 GO:0000139 ... Q10471 29061849
    383974 5ndf:F (2.3) BS02 UDP 2.4.1.41 GO:0000139 ... Q10471 29061849
    383975 5ndg:C0 (3.7) BS01 rna ? GO:0000054 ... Q08745 29208708
    383976 5ndg:C1 (3.7) BS01 rna ? GO:0000028 ... P0CX47 29208708
    383977 5ndg:C2 (3.7) BS01 rna ? GO:0000028 ... P48589 29208708
    383978 5ndg:C3 (3.7) BS01 rna ? GO:0000462 ... P05756 29208708
    383979 5ndg:C3 (3.7) BS02 rna ? GO:0000462 ... P05756 29208708
    383980 5ndg:C4 (3.7) BS01 rna ? GO:0000028 ... P06367 29208708
    383981 5ndg:C4 (3.7) BS02 MG ? GO:0000028 ... P06367 29208708
    383982 5ndg:C5 (3.7) BS01 rna ? GO:0000028 ... Q01855 29208708
    383983 5ndg:C6 (3.7) BS01 rna ? GO:0000462 ... P0CX51 29208708
    383984 5ndg:C7 (3.7) BS01 rna ? GO:0000028 ... P02407 29208708
    383985 5ndg:C8 (3.7) BS01 rna ? GO:0000054 ... P0CX55 29208708
    383986 5ndg:C9 (3.7) BS01 rna ? GO:0000028 ... P07280 29208708
    383987 5ndg:C9 (3.7) BS02 MG ? GO:0000028 ... P07280 29208708
    383988 5ndg:C9 (3.7) BS03 MG ? GO:0000028 ... P07280 29208708
    383989 5ndg:D0 (3.7) BS01 rna ? GO:0003723 ... P38701 29208708
    383990 5ndg:D2 (3.7) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    383991 5ndg:D2 (3.7) BS02 MG ? GO:0002181 ... P0C0W1 29208708
    383992 5ndg:D2 (3.7) BS03 MG ? GO:0002181 ... P0C0W1 29208708
    383993 5ndg:D2 (3.7) BS04 MG ? GO:0002181 ... P0C0W1 29208708
    383994 5ndg:D3 (3.7) BS01 rna ? GO:0000462 ... P0CX29 29208708
    383995 5ndg:D4 (3.7) BS01 rna ? GO:0000462 ... P0CX31 29208708
    383996 5ndg:D5 (3.7) BS01 rna ? N/A Q3E792 29208708
    383997 5ndg:D6 (3.7) BS01 rna ? GO:0003735 ... P39939 29208708
    383998 5ndg:D6 (3.7) BS02 ZN ? GO:0003735 ... P39939 29208708
    383999 5ndg:D7 (3.7) BS01 rna ? GO:0000028 ... P35997 29208708
    384000 5ndg:D8 (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 29208708

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).