SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    384001 5ndg:D9 (3.7) BS01 rna ? GO:0002181 ... P41057 29208708
    384002 5ndg:D9 (3.7) BS02 ZN ? GO:0002181 ... P41057 29208708
    384003 5ndg:D9 (3.7) BS03 MG ? GO:0002181 ... P41057 29208708
    384004 5ndg:E0 (3.7) BS01 rna ? GO:0002181 ... P0CX33 29208708
    384005 5ndg:E1 (3.7) BS01 rna ? GO:0000028 ... P05759 29208708
    384006 5ndg:E1 (3.7) BS02 ZN ? GO:0000028 ... P05759 29208708
    384007 5ndg:L2 (3.7) BS01 rna ? GO:0002181 ... P0CX45 29208708
    384008 5ndg:L2 (3.7) BS02 rna ? GO:0002181 ... P0CX45 29208708
    384009 5ndg:L2 (3.7) BS03 MG ? GO:0002181 ... P0CX45 29208708
    384010 5ndg:L2 (3.7) BS04 MG ? GO:0002181 ... P0CX45 29208708
    384011 5ndg:L3 (3.7) BS01 rna ? GO:0000027 ... P14126 29208708
    384012 5ndg:L4 (3.7) BS01 rna ? GO:0002181 ... P10664 29208708
    384013 5ndg:L4 (3.7) BS02 rna ? GO:0002181 ... P10664 29208708
    384014 5ndg:L5 (3.7) BS01 rna ? GO:0000027 ... P26321 29208708
    384015 5ndg:L5 (3.7) BS02 rna ? GO:0000027 ... P26321 29208708
    384016 5ndg:L6 (3.7) BS01 rna ? GO:0000027 ... Q02326 29208708
    384017 5ndg:L7 (3.7) BS01 rna ? GO:0000463 ... P05737 29208708
    384018 5ndg:L7 (3.7) BS02 rna ? GO:0000463 ... P05737 29208708
    384019 5ndg:L8 (3.7) BS01 rna ? GO:0000470 ... P17076 29208708
    384020 5ndg:L8 (3.7) BS02 rna ? GO:0000470 ... P17076 29208708
    384021 5ndg:L8 (3.7) BS03 MG ? GO:0000470 ... P17076 29208708
    384022 5ndg:L9 (3.7) BS01 rna ? GO:0002181 ... P05738 29208708
    384023 5ndg:L9 (3.7) BS02 MG ? GO:0002181 ... P05738 29208708
    384024 5ndg:M0 (3.7) BS01 rna ? GO:0000027 ... P41805 29208708
    384025 5ndg:M0 (3.7) BS02 rna ? GO:0000027 ... P41805 29208708
    384026 5ndg:M1 (3.7) BS01 rna ? GO:0000027 ... P0C0W9 29208708
    384027 5ndg:M1 (3.7) BS02 rna ? GO:0000027 ... P0C0W9 29208708
    384028 5ndg:M3 (3.7) BS01 rna ? GO:0002181 ... Q12690 29208708
    384029 5ndg:M3 (3.7) BS02 rna ? GO:0002181 ... Q12690 29208708
    384030 5ndg:M4 (3.7) BS01 rna ? GO:0000027 ... P36105 29208708
    384031 5ndg:M4 (3.7) BS02 MG ? GO:0000027 ... P36105 29208708
    384032 5ndg:M5 (3.7) BS01 rna ? GO:0002181 ... P05748 29208708
    384033 5ndg:M5 (3.7) BS02 rna ? GO:0002181 ... P05748 29208708
    384034 5ndg:M5 (3.7) BS03 MG ? GO:0002181 ... P05748 29208708
    384035 5ndg:M6 (3.7) BS01 rna ? GO:0000470 ... P26784 29208708
    384036 5ndg:M7 (3.7) BS01 rna ? GO:0000448 ... P05740 29208708
    384037 5ndg:M7 (3.7) BS02 rna ? GO:0000448 ... P05740 29208708
    384038 5ndg:M7 (3.7) BS03 MG ? GO:0000448 ... P05740 29208708
    384039 5ndg:M7 (3.7) BS04 MG ? GO:0000448 ... P05740 29208708
    384040 5ndg:M8 (3.7) BS01 rna ? GO:0002181 ... P0CX49 29208708
    384041 5ndg:M8 (3.7) BS02 MG ? GO:0002181 ... P0CX49 29208708
    384042 5ndg:M9 (3.7) BS01 rna ? GO:0002181 ... P0CX82 29208708
    384043 5ndg:M9 (3.7) BS02 rna ? GO:0002181 ... P0CX82 29208708
    384044 5ndg:N0 (3.7) BS01 rna ? GO:0002181 ... P0CX23 29208708
    384045 5ndg:N0 (3.7) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384046 5ndg:N1 (3.7) BS01 rna ? GO:0002181 ... Q02753 29208708
    384047 5ndg:N1 (3.7) BS02 rna ? GO:0002181 ... Q02753 29208708
    384048 5ndg:N2 (3.7) BS01 rna ? GO:0003735 ... P05749 29208708
    384049 5ndg:N2 (3.7) BS02 MG ? GO:0003735 ... P05749 29208708
    384050 5ndg:N3 (3.7) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384051 5ndg:N3 (3.7) BS02 rna ? GO:0002181 ... P0CX41 29208708
    384052 5ndg:N3 (3.7) BS03 MG ? GO:0002181 ... P0CX41 29208708
    384053 5ndg:N4 (3.7) BS01 rna ? GO:0002181 ... P04449 29208708
    384054 5ndg:N4 (3.7) BS02 rna ? GO:0002181 ... P04449 29208708
    384055 5ndg:N5 (3.7) BS01 rna ? GO:0003735 ... P04456 29208708
    384056 5ndg:N5 (3.7) BS02 rna ? GO:0003735 ... P04456 29208708
    384057 5ndg:N6 (3.7) BS01 rna ? GO:0002181 ... P05743 29208708
    384058 5ndg:N6 (3.7) BS02 rna ? GO:0002181 ... P05743 29208708
    384059 5ndg:N7 (3.7) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384060 5ndg:N7 (3.7) BS02 MG ? GO:0002181 ... P0C2H6 29208708
    384061 5ndg:N8 (3.7) BS01 rna ? GO:0002181 ... P02406 29208708
    384062 5ndg:N9 (3.7) BS01 rna ? GO:0002181 ... P05747 29208708
    384063 5ndg:O0 (3.7) BS01 rna ? GO:0002181 ... P14120 29208708
    384064 5ndg:O1 (3.7) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384065 5ndg:O2 (3.7) BS01 rna ? GO:0002181 ... P38061 29208708
    384066 5ndg:O3 (3.7) BS01 rna ? GO:0000027 ... P05744 29208708
    384067 5ndg:O3 (3.7) BS02 MG ? GO:0000027 ... P05744 29208708
    384068 5ndg:O4 (3.7) BS01 rna ? GO:0002181 ... P87262 29208708
    384069 5ndg:O4 (3.7) BS02 ZN ? GO:0002181 ... P87262 29208708
    384070 5ndg:O5 (3.7) BS01 rna ? GO:0000463 ... P0CX84 29208708
    384071 5ndg:O5 (3.7) BS02 rna ? GO:0000463 ... P0CX84 29208708
    384072 5ndg:O5 (3.7) BS03 MG ? GO:0000463 ... P0CX84 29208708
    384073 5ndg:O6 (3.7) BS01 rna ? GO:0002181 ... P05745 29208708
    384074 5ndg:O6 (3.7) BS02 MG ? GO:0002181 ... P05745 29208708
    384075 5ndg:O7 (3.7) BS01 rna ? GO:0000448 ... P49166 29208708
    384076 5ndg:O7 (3.7) BS02 rna ? GO:0000448 ... P49166 29208708
    384077 5ndg:O7 (3.7) BS03 MG ? GO:0000448 ... P49166 29208708
    384078 5ndg:O7 (3.7) BS04 ZN ? GO:0000448 ... P49166 29208708
    384079 5ndg:O7 (3.7) BS05 MG ? GO:0000448 ... P49166 29208708
    384080 5ndg:O8 (3.7) BS01 rna ? GO:0002181 ... P49167 29208708
    384081 5ndg:O9 (3.7) BS01 rna ? GO:0002181 ... P04650 29208708
    384082 5ndg:O9 (3.7) BS02 rna ? GO:0002181 ... P04650 29208708
    384083 5ndg:Q0 (3.7) BS01 rna ? GO:0003735 ... P0CH08 29208708
    384084 5ndg:Q0 (3.7) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    384085 5ndg:Q2 (3.7) BS01 rna ? GO:0002181 ... P0CX27 29208708
    384086 5ndg:Q2 (3.7) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    384087 5ndg:Q2 (3.7) BS03 MG ? GO:0002181 ... P0CX27 29208708
    384088 5ndg:Q3 (3.7) BS01 rna ? GO:0002181 ... P0CX25 29208708
    384089 5ndg:Q3 (3.7) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    384090 5ndg:S0 (3.7) BS01 rna ? GO:0003735 ... P32905 29208708
    384091 5ndg:S1 (3.7) BS01 rna ? GO:0003735 ... P33442 29208708
    384092 5ndg:S2 (3.7) BS01 rna ? GO:0003723 ... P25443 29208708
    384093 5ndg:S3 (3.7) BS01 rna ? GO:0000054 ... P05750 29208708
    384094 5ndg:S4 (3.7) BS01 rna ? GO:0002181 ... P0CX35 29208708
    384095 5ndg:S5 (3.7) BS01 rna ? GO:0000028 ... P26783 29208708
    384096 5ndg:S6 (3.7) BS01 rna ? GO:0000462 ... P0CX37 29208708
    384097 5ndg:S7 (3.7) BS01 rna ? GO:0002181 ... P26786 29208708
    384098 5ndg:S8 (3.7) BS01 rna ? GO:0000462 ... P0CX39 29208708
    384099 5ndg:S8 (3.7) BS02 rna ? GO:0000462 ... P0CX39 29208708
    384100 5ndg:S9 (3.7) BS01 rna ? GO:0000462 ... O13516 29208708
    384101 5ndg:SM (3.7) BS01 rna ? GO:0000723 ... P39015 29208708
    384102 5ndg:SM (3.7) BS02 rna ? GO:0000723 ... P39015 29208708
    384103 5ndg:SR (3.7) BS01 rna ? GO:0001965 ... P38011 29208708
    384104 5ndg:c0 (3.7) BS01 rna ? GO:0000054 ... Q08745 29208708
    384105 5ndg:c1 (3.7) BS01 rna ? GO:0000028 ... P0CX47 29208708
    384106 5ndg:c2 (3.7) BS01 rna ? GO:0000028 ... P48589 29208708
    384107 5ndg:c3 (3.7) BS01 rna ? GO:0000462 ... P05756 29208708
    384108 5ndg:c3 (3.7) BS02 rna ? GO:0000462 ... P05756 29208708
    384109 5ndg:c4 (3.7) BS01 rna ? GO:0000028 ... P06367 29208708
    384110 5ndg:c4 (3.7) BS02 MG ? GO:0000028 ... P06367 29208708
    384111 5ndg:c5 (3.7) BS01 rna ? GO:0000028 ... Q01855 29208708
    384112 5ndg:c6 (3.7) BS01 rna ? GO:0000462 ... P0CX51 29208708
    384113 5ndg:c7 (3.7) BS01 rna ? GO:0000028 ... P02407 29208708
    384114 5ndg:c8 (3.7) BS01 rna ? GO:0000054 ... P0CX55 29208708
    384115 5ndg:c8 (3.7) BS02 MG ? GO:0000054 ... P0CX55 29208708
    384116 5ndg:c9 (3.7) BS01 rna ? GO:0000028 ... P07280 29208708
    384117 5ndg:d0 (3.7) BS01 rna ? GO:0003723 ... P38701 29208708
    384118 5ndg:d2 (3.7) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    384119 5ndg:d3 (3.7) BS01 rna ? GO:0000462 ... P0CX29 29208708
    384120 5ndg:d3 (3.7) BS02 MG ? GO:0000462 ... P0CX29 29208708
    384121 5ndg:d4 (3.7) BS01 rna ? GO:0000462 ... P0CX31 29208708
    384122 5ndg:d5 (3.7) BS01 rna ? N/A Q3E792 29208708
    384123 5ndg:d6 (3.7) BS01 rna ? GO:0003735 ... P39939 29208708
    384124 5ndg:d6 (3.7) BS02 ZN ? GO:0003735 ... P39939 29208708
    384125 5ndg:d7 (3.7) BS01 rna ? GO:0000028 ... P35997 29208708
    384126 5ndg:d8 (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    384127 5ndg:d9 (3.7) BS01 rna ? GO:0002181 ... P41057 29208708
    384128 5ndg:d9 (3.7) BS02 MG ? GO:0002181 ... P41057 29208708
    384129 5ndg:d9 (3.7) BS03 ZN ? GO:0002181 ... P41057 29208708
    384130 5ndg:e0 (3.7) BS01 rna ? GO:0002181 ... P0CX33 29208708
    384131 5ndg:e1 (3.7) BS01 rna ? GO:0000028 ... P05759 29208708
    384132 5ndg:l2 (3.7) BS01 rna ? GO:0002181 ... P0CX45 29208708
    384133 5ndg:l2 (3.7) BS02 rna ? GO:0002181 ... P0CX45 29208708
    384134 5ndg:l2 (3.7) BS03 MG ? GO:0002181 ... P0CX45 29208708
    384135 5ndg:l2 (3.7) BS04 MG ? GO:0002181 ... P0CX45 29208708
    384136 5ndg:l3 (3.7) BS01 rna ? GO:0000027 ... P14126 29208708
    384137 5ndg:l3 (3.7) BS02 MG ? GO:0000027 ... P14126 29208708
    384138 5ndg:l4 (3.7) BS01 rna ? GO:0002181 ... P10664 29208708
    384139 5ndg:l4 (3.7) BS02 rna ? GO:0002181 ... P10664 29208708
    384140 5ndg:l5 (3.7) BS01 rna ? GO:0000027 ... P26321 29208708
    384141 5ndg:l5 (3.7) BS02 rna ? GO:0000027 ... P26321 29208708
    384142 5ndg:l6 (3.7) BS01 rna ? GO:0000027 ... Q02326 29208708
    384143 5ndg:l6 (3.7) BS02 MG ? GO:0000027 ... Q02326 29208708
    384144 5ndg:l7 (3.7) BS01 rna ? GO:0000463 ... P05737 29208708
    384145 5ndg:l7 (3.7) BS02 rna ? GO:0000463 ... P05737 29208708
    384146 5ndg:l8 (3.7) BS01 rna ? GO:0000470 ... P17076 29208708
    384147 5ndg:l8 (3.7) BS02 rna ? GO:0000470 ... P17076 29208708
    384148 5ndg:l9 (3.7) BS01 rna ? GO:0002181 ... P05738 29208708
    384149 5ndg:m0 (3.7) BS01 rna ? GO:0000027 ... P41805 29208708
    384150 5ndg:m0 (3.7) BS02 rna ? GO:0000027 ... P41805 29208708
    384151 5ndg:m1 (3.7) BS01 rna ? GO:0000027 ... P0C0W9 29208708
    384152 5ndg:m1 (3.7) BS02 rna ? GO:0000027 ... P0C0W9 29208708
    384153 5ndg:m3 (3.7) BS01 rna ? GO:0002181 ... Q12690 29208708
    384154 5ndg:m3 (3.7) BS02 rna ? GO:0002181 ... Q12690 29208708
    384155 5ndg:m4 (3.7) BS01 rna ? GO:0000027 ... P36105 29208708
    384156 5ndg:m5 (3.7) BS01 rna ? GO:0002181 ... P05748 29208708
    384157 5ndg:m5 (3.7) BS02 rna ? GO:0002181 ... P05748 29208708
    384158 5ndg:m6 (3.7) BS01 rna ? GO:0000470 ... P26784 29208708
    384159 5ndg:m7 (3.7) BS01 rna ? GO:0000448 ... P05740 29208708
    384160 5ndg:m7 (3.7) BS02 rna ? GO:0000448 ... P05740 29208708
    384161 5ndg:m7 (3.7) BS03 MG ? GO:0000448 ... P05740 29208708
    384162 5ndg:m8 (3.7) BS01 rna ? GO:0002181 ... P0CX49 29208708
    384163 5ndg:m9 (3.7) BS01 rna ? GO:0002181 ... P0CX82 29208708
    384164 5ndg:m9 (3.7) BS02 rna ? GO:0002181 ... P0CX82 29208708
    384165 5ndg:n0 (3.7) BS01 rna ? GO:0002181 ... P0CX23 29208708
    384166 5ndg:n0 (3.7) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384167 5ndg:n1 (3.7) BS01 rna ? GO:0002181 ... Q02753 29208708
    384168 5ndg:n1 (3.7) BS02 rna ? GO:0002181 ... Q02753 29208708
    384169 5ndg:n2 (3.7) BS01 rna ? GO:0003735 ... P05749 29208708
    384170 5ndg:n3 (3.7) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384171 5ndg:n3 (3.7) BS02 rna ? GO:0002181 ... P0CX41 29208708
    384172 5ndg:n4 (3.7) BS01 rna ? GO:0002181 ... P04449 29208708
    384173 5ndg:n4 (3.7) BS02 rna ? GO:0002181 ... P04449 29208708
    384174 5ndg:n4 (3.7) BS03 GET ? GO:0002181 ... P04449 29208708
    384175 5ndg:n5 (3.7) BS01 rna ? GO:0003735 ... P04456 29208708
    384176 5ndg:n5 (3.7) BS02 rna ? GO:0003735 ... P04456 29208708
    384177 5ndg:n6 (3.7) BS01 rna ? GO:0002181 ... P05743 29208708
    384178 5ndg:n6 (3.7) BS02 rna ? GO:0002181 ... P05743 29208708
    384179 5ndg:n6 (3.7) BS03 rna ? GO:0002181 ... P05743 29208708
    384180 5ndg:n6 (3.7) BS04 GET ? GO:0002181 ... P05743 29208708
    384181 5ndg:n7 (3.7) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384182 5ndg:n8 (3.7) BS01 rna ? GO:0002181 ... P02406 29208708
    384183 5ndg:n8 (3.7) BS02 MG ? GO:0002181 ... P02406 29208708
    384184 5ndg:n9 (3.7) BS01 rna ? GO:0002181 ... P05747 29208708
    384185 5ndg:o0 (3.7) BS01 rna ? GO:0002181 ... P14120 29208708
    384186 5ndg:o1 (3.7) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384187 5ndg:o2 (3.7) BS01 rna ? GO:0002181 ... P38061 29208708
    384188 5ndg:o3 (3.7) BS01 rna ? GO:0000027 ... P05744 29208708
    384189 5ndg:o4 (3.7) BS01 rna ? GO:0002181 ... P87262 29208708
    384190 5ndg:o4 (3.7) BS02 ZN ? GO:0002181 ... P87262 29208708
    384191 5ndg:o5 (3.7) BS01 rna ? GO:0000463 ... P0CX84 29208708
    384192 5ndg:o5 (3.7) BS02 rna ? GO:0000463 ... P0CX84 29208708
    384193 5ndg:o6 (3.7) BS01 rna ? GO:0002181 ... P05745 29208708
    384194 5ndg:o7 (3.7) BS01 rna ? GO:0000448 ... P49166 29208708
    384195 5ndg:o7 (3.7) BS02 rna ? GO:0000448 ... P49166 29208708
    384196 5ndg:o7 (3.7) BS03 ZN ? GO:0000448 ... P49166 29208708
    384197 5ndg:o7 (3.7) BS04 MG ? GO:0000448 ... P49166 29208708
    384198 5ndg:o8 (3.7) BS01 rna ? GO:0002181 ... P49167 29208708
    384199 5ndg:o9 (3.7) BS01 rna ? GO:0002181 ... P04650 29208708
    384200 5ndg:o9 (3.7) BS02 rna ? GO:0002181 ... P04650 29208708

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).