SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    384201 5ndg:p0 (3.7) BS01 rna ? GO:0000027 ... P05317 29208708
    384202 5ndg:q0 (3.7) BS01 rna ? GO:0003735 ... P0CH08 29208708
    384203 5ndg:q0 (3.7) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    384204 5ndg:q2 (3.7) BS01 rna ? GO:0002181 ... P0CX27 29208708
    384205 5ndg:q2 (3.7) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    384206 5ndg:q2 (3.7) BS03 MG ? GO:0002181 ... P0CX27 29208708
    384207 5ndg:q2 (3.7) BS04 MG ? GO:0002181 ... P0CX27 29208708
    384208 5ndg:q3 (3.7) BS01 rna ? GO:0002181 ... P0CX25 29208708
    384209 5ndg:q3 (3.7) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    384210 5ndg:s0 (3.7) BS01 rna ? GO:0003735 ... P32905 29208708
    384211 5ndg:s1 (3.7) BS01 rna ? GO:0003735 ... P33442 29208708
    384212 5ndg:s2 (3.7) BS01 rna ? GO:0003723 ... P25443 29208708
    384213 5ndg:s3 (3.7) BS01 rna ? GO:0000054 ... P05750 29208708
    384214 5ndg:s4 (3.7) BS01 rna ? GO:0002181 ... P0CX35 29208708
    384215 5ndg:s5 (3.7) BS01 rna ? GO:0000028 ... P26783 29208708
    384216 5ndg:s5 (3.7) BS02 MG ? GO:0000028 ... P26783 29208708
    384217 5ndg:s6 (3.7) BS01 rna ? GO:0000462 ... P0CX37 29208708
    384218 5ndg:s7 (3.7) BS01 rna ? GO:0002181 ... P26786 29208708
    384219 5ndg:s8 (3.7) BS01 rna ? GO:0000462 ... P0CX39 29208708
    384220 5ndg:s8 (3.7) BS02 rna ? GO:0000462 ... P0CX39 29208708
    384221 5ndg:s9 (3.7) BS01 rna ? GO:0000462 ... O13516 29208708
    384222 5ndg:sM (3.7) BS01 rna ? GO:0000723 ... P39015 29208708
    384223 5ndg:sM (3.7) BS02 rna ? GO:0000723 ... P39015 29208708
    384224 5ndg:sR (3.7) BS01 rna ? GO:0001965 ... P38011 29208708
    384225 5ndj:11 (3.15) BS01 rna ? GO:0002181 ... P60405 29208708
    384226 5ndj:11 (3.15) BS02 rna ? GO:0002181 ... P60405 29208708
    384227 5ndj:11 (3.15) BS03 MG ? GO:0002181 ... P60405 29208708
    384228 5ndj:12 (3.15) BS01 rna ? GO:0003735 ... P80371 29208708
    384229 5ndj:15 (3.15) BS01 rna ? GO:0003729 ... P60488 29208708
    384230 5ndj:19 (3.15) BS01 rna ? GO:0002181 ... P60405 29208708
    384231 5ndj:19 (3.15) BS02 rna ? GO:0002181 ... P60405 29208708
    384232 5ndj:1A (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 29208708
    384233 5ndj:1E (3.15) BS01 rna ? GO:0003735 ... P80371 29208708
    384234 5ndj:1I (3.15) BS01 rna ? GO:0000049 ... Q5SHN7 29208708
    384235 5ndj:21 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 29208708
    384236 5ndj:21 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 29208708
    384237 5ndj:22 (3.15) BS01 rna ? GO:0003676 ... P80372 29208708
    384238 5ndj:25 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 29208708
    384239 5ndj:25 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 29208708
    384240 5ndj:29 (3.15) BS01 rna ? GO:0003735 ... Q5SHN8 29208708
    384241 5ndj:29 (3.15) BS02 MG ? GO:0003735 ... Q5SHN8 29208708
    384242 5ndj:2A (3.15) BS01 rna ? GO:0003735 ... P80376 29208708
    384243 5ndj:2A (3.15) BS02 MG ? GO:0003735 ... P80376 29208708
    384244 5ndj:2E (3.15) BS01 rna ? GO:0003676 ... P80372 29208708
    384245 5ndj:2I (3.15) BS01 rna ? GO:0003735 ... P80376 29208708
    384246 5ndj:2I (3.15) BS02 MG ? GO:0003735 ... P80376 29208708
    384247 5ndj:31 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 29208708
    384248 5ndj:32 (3.15) BS01 rna ? GO:0003723 ... P80373 29208708
    384249 5ndj:32 (3.15) BS02 MG ? GO:0003723 ... P80373 29208708
    384250 5ndj:35 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 29208708
    384251 5ndj:39 (3.15) BS01 rna ? GO:0003735 ... Q5SHN9 29208708
    384252 5ndj:39 (3.15) BS02 MG ? GO:0003735 ... Q5SHN9 29208708
    384253 5ndj:39 (3.15) BS03 MG ? GO:0003735 ... Q5SHN9 29208708
    384254 5ndj:3A (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 29208708
    384255 5ndj:3A (3.15) BS02 MG ? GO:0000049 ... Q5SHN3 29208708
    384256 5ndj:3E (3.15) BS01 rna ? GO:0003723 ... P80373 29208708
    384257 5ndj:3E (3.15) BS02 MG ? GO:0003723 ... P80373 29208708
    384258 5ndj:3I (3.15) BS01 rna ? GO:0000049 ... Q5SHN3 29208708
    384259 5ndj:3I (3.15) BS02 MG ? GO:0000049 ... Q5SHN3 29208708
    384260 5ndj:3I (3.15) BS03 MG ? GO:0000049 ... Q5SHN3 29208708
    384261 5ndj:41 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 29208708
    384262 5ndj:41 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 29208708
    384263 5ndj:41 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 29208708
    384264 5ndj:41 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 29208708
    384265 5ndj:41 (3.15) BS05 MG ? GO:0000049 ... Q5SHQ0 29208708
    384266 5ndj:42 (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 29208708
    384267 5ndj:42 (3.15) BS02 MG ? GO:0003723 ... Q5SHQ5 29208708
    384268 5ndj:45 (3.15) BS01 rna ? GO:0000049 ... P60489 29208708
    384269 5ndj:45 (3.15) BS02 rna ? GO:0000049 ... P60489 29208708
    384270 5ndj:45 (3.15) BS03 rna ? GO:0000049 ... P60489 29208708
    384271 5ndj:49 (3.15) BS01 rna ? GO:0000049 ... Q5SHQ0 29208708
    384272 5ndj:49 (3.15) BS02 rna ? GO:0000049 ... Q5SHQ0 29208708
    384273 5ndj:49 (3.15) BS03 rna ? GO:0000049 ... Q5SHQ0 29208708
    384274 5ndj:49 (3.15) BS04 MG ? GO:0000049 ... Q5SHQ0 29208708
    384275 5ndj:4A (3.15) BS01 rna ? GO:0000049 ... P80377 29208708
    384276 5ndj:4E (3.15) BS01 rna ? GO:0003723 ... Q5SHQ5 29208708
    384277 5ndj:4E (3.15) BS02 MG ? GO:0003723 ... Q5SHQ5 29208708
    384278 5ndj:4I (3.15) BS01 rna ? GO:0000049 ... P80377 29208708
    384279 5ndj:51 (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384280 5ndj:52 (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 29208708
    384281 5ndj:55 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 29208708
    384282 5ndj:58 (3.15) BS01 rna ? GO:0003729 ... P60488 29208708
    384283 5ndj:59 (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384284 5ndj:5A (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384285 5ndj:5A (3.15) BS02 ZN N/A GO:0003735 ... N/A 29208708
    384286 5ndj:5E (3.15) BS01 rna ? GO:0003735 ... Q5SLP8 29208708
    384287 5ndj:5E (3.15) BS02 MG ? GO:0003735 ... Q5SLP8 29208708
    384288 5ndj:5I (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384289 5ndj:5I (3.15) BS02 ZN N/A GO:0003735 ... N/A 29208708
    384290 5ndj:5I (3.15) BS03 MG N/A GO:0003735 ... N/A 29208708
    384291 5ndj:61 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 29208708
    384292 5ndj:62 (3.15) BS01 rna ? GO:0000049 ... P17291 29208708
    384293 5ndj:62 (3.15) BS02 rna ? GO:0000049 ... P17291 29208708
    384294 5ndj:65 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 29208708
    384295 5ndj:65 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 29208708
    384296 5ndj:68 (3.15) BS01 rna ? GO:0003735 ... Q5SHP8 29208708
    384297 5ndj:68 (3.15) BS02 rna ? GO:0003735 ... Q5SHP8 29208708
    384298 5ndj:69 (3.15) BS01 rna ? GO:0003735 ... Q5SLQ1 29208708
    384299 5ndj:69 (3.15) BS02 rna ? GO:0003735 ... Q5SLQ1 29208708
    384300 5ndj:6A (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 29208708
    384301 5ndj:6A (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 29208708
    384302 5ndj:6E (3.15) BS01 rna ? GO:0000049 ... P17291 29208708
    384303 5ndj:6E (3.15) BS02 rna ? GO:0000049 ... P17291 29208708
    384304 5ndj:6I (3.15) BS01 rna ? GO:0003735 ... Q5SJ76 29208708
    384305 5ndj:6I (3.15) BS02 rna ? GO:0003735 ... Q5SJ76 29208708
    384306 5ndj:72 (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384307 5ndj:75 (3.15) BS01 rna ? GO:0003735 ... P60490 29208708
    384308 5ndj:75 (3.15) BS02 rna ? GO:0003735 ... P60490 29208708
    384309 5ndj:78 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ7 29208708
    384310 5ndj:78 (3.15) BS02 MG ? GO:0003735 ... Q5SHQ7 29208708
    384311 5ndj:7A (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 29208708
    384312 5ndj:7E (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384313 5ndj:7I (3.15) BS01 rna ? GO:0003735 ... Q5SJH3 29208708
    384314 5ndj:82 (3.15) BS01 rna ? GO:0000049 ... P80374 29208708
    384315 5ndj:85 (3.15) BS01 rna ? GO:0000027 ... P60491 29208708
    384316 5ndj:88 (3.15) BS01 rna ? GO:0000049 ... P60489 29208708
    384317 5ndj:88 (3.15) BS02 rna ? GO:0000049 ... P60489 29208708
    384318 5ndj:88 (3.15) BS03 rna ? GO:0000049 ... P60489 29208708
    384319 5ndj:88 (3.15) BS04 MG ? GO:0000049 ... P60489 29208708
    384320 5ndj:8A (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384321 5ndj:8A (3.15) BS02 MG N/A GO:0003735 ... N/A 29208708
    384322 5ndj:8E (3.15) BS01 rna ? GO:0000049 ... P80374 29208708
    384323 5ndj:8E (3.15) BS02 rna ? GO:0000049 ... P80374 29208708
    384324 5ndj:8I (3.15) BS01 rna N/A GO:0003735 ... N/A 29208708
    384325 5ndj:95 (3.15) BS01 rna ? GO:0003723 ... P60492 29208708
    384326 5ndj:98 (3.15) BS01 rna ? GO:0003735 ... Q9Z9H5 29208708
    384327 5ndj:9A (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 29208708
    384328 5ndj:9I (3.15) BS01 rna ? GO:0003735 ... Q5SLQ0 29208708
    384329 5ndj:A5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 29208708
    384330 5ndj:A5 (3.15) BS02 MG ? GO:0003735 ... Q5SHP3 29208708
    384331 5ndj:A8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ4 29208708
    384332 5ndj:A8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ4 29208708
    384333 5ndj:AA (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 29208708
    384334 5ndj:AI (3.15) BS01 rna ? GO:0000028 ... Q5SHP2 29208708
    384335 5ndj:B5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP0 29208708
    384336 5ndj:B8 (3.15) BS01 rna ? GO:0003735 ... P60490 29208708
    384337 5ndj:B8 (3.15) BS02 rna ? GO:0003735 ... P60490 29208708
    384338 5ndj:BA (3.15) BS01 rna ? GO:0003723 ... P80380 29208708
    384339 5ndj:BI (3.15) BS01 rna ? GO:0003723 ... P80380 29208708
    384340 5ndj:C5 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 29208708
    384341 5ndj:C8 (3.15) BS01 rna ? GO:0000027 ... P60491 29208708
    384342 5ndj:C8 (3.15) BS02 MG ? GO:0000027 ... P60491 29208708
    384343 5ndj:D5 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 29208708
    384344 5ndj:D8 (3.15) BS01 rna ? GO:0003723 ... P60492 29208708
    384345 5ndj:E5 (3.15) BS01 rna ? GO:0003735 ... P60493 29208708
    384346 5ndj:E5 (3.15) BS02 rna ? GO:0003735 ... P60493 29208708
    384347 5ndj:E5 (3.15) BS03 rna ? GO:0003735 ... P60493 29208708
    384348 5ndj:E8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP3 29208708
    384349 5ndj:F5 (3.15) BS01 rna ? GO:0003735 ... P60494 29208708
    384350 5ndj:F8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP0 29208708
    384351 5ndj:G5 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 29208708
    384352 5ndj:G8 (3.15) BS01 rna ? GO:0003723 ... Q5SHP9 29208708
    384353 5ndj:H5 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 29208708
    384354 5ndj:H5 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 29208708
    384355 5ndj:H8 (3.15) BS01 rna ? GO:0003723 ... Q5SHZ1 29208708
    384356 5ndj:H8 (3.15) BS02 rna ? GO:0003723 ... Q5SHZ1 29208708
    384357 5ndj:I5 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 29208708
    384358 5ndj:I8 (3.15) BS01 rna ? GO:0003735 ... P60493 29208708
    384359 5ndj:I8 (3.15) BS02 rna ? GO:0003735 ... P60493 29208708
    384360 5ndj:I8 (3.15) BS03 rna ? GO:0003735 ... P60493 29208708
    384361 5ndj:J5 (3.15) BS01 rna ? GO:0003735 ... P80339 29208708
    384362 5ndj:J8 (3.15) BS01 rna ? GO:0003735 ... P60494 29208708
    384363 5ndj:J8 (3.15) BS02 rna ? GO:0003735 ... P60494 29208708
    384364 5ndj:K8 (3.15) BS01 rna ? GO:0003735 ... Q5SHP6 29208708
    384365 5ndj:K8 (3.15) BS02 MG ? GO:0003735 ... Q5SHP6 29208708
    384366 5ndj:L5 (3.15) BS01 rna ? GO:0003735 ... P80340 29208708
    384367 5ndj:L8 (3.15) BS01 rna ? GO:0003735 ... Q5SHQ6 29208708
    384368 5ndj:L8 (3.15) BS02 rna ? GO:0003735 ... Q5SHQ6 29208708
    384369 5ndj:M5 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 29208708
    384370 5ndj:M8 (3.15) BS01 rna ? GO:0003735 ... Q5SJE1 29208708
    384371 5ndj:N8 (3.15) BS01 rna ? GO:0003735 ... P80339 29208708
    384372 5ndj:P8 (3.15) BS01 rna ? GO:0003735 ... P80340 29208708
    384373 5ndj:Q8 (3.15) BS01 rna ? GO:0003735 ... Q5SKU1 29208708
    384374 5ndk:11 (2.95) BS01 rna ? GO:0002181 ... P60405 29208708
    384375 5ndk:11 (2.95) BS02 rna ? GO:0002181 ... P60405 29208708
    384376 5ndk:11 (2.95) BS03 MG ? GO:0002181 ... P60405 29208708
    384377 5ndk:11 (2.95) BS04 MG ? GO:0002181 ... P60405 29208708
    384378 5ndk:12 (2.95) BS01 rna ? GO:0003735 ... P80371 29208708
    384379 5ndk:15 (2.95) BS01 rna ? GO:0003729 ... P60488 29208708
    384380 5ndk:19 (2.95) BS01 rna ? GO:0002181 ... P60405 29208708
    384381 5ndk:19 (2.95) BS02 rna ? GO:0002181 ... P60405 29208708
    384382 5ndk:19 (2.95) BS03 MG ? GO:0002181 ... P60405 29208708
    384383 5ndk:1A (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 29208708
    384384 5ndk:1E (2.95) BS01 rna ? GO:0003735 ... P80371 29208708
    384385 5ndk:1I (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 29208708
    384386 5ndk:21 (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 29208708
    384387 5ndk:21 (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 29208708
    384388 5ndk:22 (2.95) BS01 rna ? GO:0003676 ... P80372 29208708
    384389 5ndk:25 (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 29208708
    384390 5ndk:25 (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 29208708
    384391 5ndk:25 (2.95) BS03 MG ? GO:0003735 ... Q5SHP8 29208708
    384392 5ndk:29 (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 29208708
    384393 5ndk:29 (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 29208708
    384394 5ndk:29 (2.95) BS03 MG ? GO:0003735 ... Q5SHN8 29208708
    384395 5ndk:2A (2.95) BS01 rna ? GO:0003735 ... P80376 29208708
    384396 5ndk:2A (2.95) BS02 MG ? GO:0003735 ... P80376 29208708
    384397 5ndk:2E (2.95) BS01 rna ? GO:0003676 ... P80372 29208708
    384398 5ndk:2I (2.95) BS01 rna ? GO:0003735 ... P80376 29208708
    384399 5ndk:2I (2.95) BS02 MG ? GO:0003735 ... P80376 29208708
    384400 5ndk:31 (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 29208708

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).