SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1914 1915 1916 1917 1918 1919 1920 1921 1922 1923 1924 1925 1926 1927 1928 1929 1930 1931 1932 1933 1934 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    384601 5ndv:N0 (3.3) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384602 5ndv:N1 (3.3) BS01 rna ? GO:0002181 ... Q02753 29208708
    384603 5ndv:N1 (3.3) BS02 rna ? GO:0002181 ... Q02753 29208708
    384604 5ndv:N1 (3.3) BS03 MG ? GO:0002181 ... Q02753 29208708
    384605 5ndv:N2 (3.3) BS01 rna ? GO:0003735 ... P05749 29208708
    384606 5ndv:N2 (3.3) BS02 PAR ? GO:0003735 ... P05749 29208708
    384607 5ndv:N3 (3.3) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384608 5ndv:N3 (3.3) BS02 rna ? GO:0002181 ... P0CX41 29208708
    384609 5ndv:N4 (3.3) BS01 rna ? GO:0002181 ... P04449 29208708
    384610 5ndv:N5 (3.3) BS01 rna ? GO:0003735 ... P04456 29208708
    384611 5ndv:N5 (3.3) BS02 rna ? GO:0003735 ... P04456 29208708
    384612 5ndv:N6 (3.3) BS01 rna ? GO:0002181 ... P05743 29208708
    384613 5ndv:N6 (3.3) BS02 rna ? GO:0002181 ... P05743 29208708
    384614 5ndv:N7 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384615 5ndv:N7 (3.3) BS02 MG ? GO:0002181 ... P0C2H6 29208708
    384616 5ndv:N8 (3.3) BS01 rna ? GO:0002181 ... P02406 29208708
    384617 5ndv:N9 (3.3) BS01 rna ? GO:0002181 ... P05747 29208708
    384618 5ndv:O0 (3.3) BS01 rna ? GO:0002181 ... P14120 29208708
    384619 5ndv:O1 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384620 5ndv:O2 (3.3) BS01 rna ? GO:0002181 ... P38061 29208708
    384621 5ndv:O2 (3.3) BS02 MG ? GO:0002181 ... P38061 29208708
    384622 5ndv:O3 (3.3) BS01 rna ? GO:0000027 ... P05744 29208708
    384623 5ndv:O4 (3.3) BS01 rna ? GO:0002181 ... P87262 29208708
    384624 5ndv:O4 (3.3) BS02 ZN ? GO:0002181 ... P87262 29208708
    384625 5ndv:O4 (3.3) BS03 MG ? GO:0002181 ... P87262 29208708
    384626 5ndv:O5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 29208708
    384627 5ndv:O5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 29208708
    384628 5ndv:O6 (3.3) BS01 rna ? GO:0002181 ... P05745 29208708
    384629 5ndv:O7 (3.3) BS01 rna ? GO:0000448 ... P49166 29208708
    384630 5ndv:O7 (3.3) BS02 rna ? GO:0000448 ... P49166 29208708
    384631 5ndv:O7 (3.3) BS03 ZN ? GO:0000448 ... P49166 29208708
    384632 5ndv:O7 (3.3) BS04 MG ? GO:0000448 ... P49166 29208708
    384633 5ndv:O8 (3.3) BS01 rna ? GO:0002181 ... P49167 29208708
    384634 5ndv:O9 (3.3) BS01 rna ? GO:0002181 ... P04650 29208708
    384635 5ndv:O9 (3.3) BS02 rna ? GO:0002181 ... P04650 29208708
    384636 5ndv:Q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 29208708
    384637 5ndv:Q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    384638 5ndv:Q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 29208708
    384639 5ndv:Q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    384640 5ndv:Q2 (3.3) BS03 MG ? GO:0002181 ... P0CX27 29208708
    384641 5ndv:Q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 29208708
    384642 5ndv:Q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    384643 5ndv:S0 (3.3) BS01 rna ? GO:0003735 ... P32905 29208708
    384644 5ndv:S1 (3.3) BS01 rna ? GO:0003735 ... P33442 29208708
    384645 5ndv:S2 (3.3) BS01 rna ? GO:0003723 ... P25443 29208708
    384646 5ndv:S3 (3.3) BS01 rna ? GO:0000054 ... P05750 29208708
    384647 5ndv:S4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 29208708
    384648 5ndv:S5 (3.3) BS01 rna ? GO:0000028 ... P26783 29208708
    384649 5ndv:S5 (3.3) BS02 MG ? GO:0000028 ... P26783 29208708
    384650 5ndv:S6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 29208708
    384651 5ndv:S7 (3.3) BS01 rna ? GO:0002181 ... P26786 29208708
    384652 5ndv:S8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 29208708
    384653 5ndv:S8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 29208708
    384654 5ndv:S9 (3.3) BS01 rna ? GO:0000462 ... O13516 29208708
    384655 5ndv:SM (3.3) BS01 rna ? GO:0000723 ... P39015 29208708
    384656 5ndv:SM (3.3) BS02 rna ? GO:0000723 ... P39015 29208708
    384657 5ndv:SR (3.3) BS01 rna ? GO:0001965 ... P38011 29208708
    384658 5ndv:c0 (3.3) BS01 rna ? GO:0000054 ... Q08745 29208708
    384659 5ndv:c1 (3.3) BS01 rna ? GO:0000028 ... P0CX47 29208708
    384660 5ndv:c1 (3.3) BS02 PAR ? GO:0000028 ... P0CX47 29208708
    384661 5ndv:c2 (3.3) BS01 rna ? GO:0000028 ... P48589 29208708
    384662 5ndv:c3 (3.3) BS01 rna ? GO:0000462 ... P05756 29208708
    384663 5ndv:c3 (3.3) BS02 rna ? GO:0000462 ... P05756 29208708
    384664 5ndv:c4 (3.3) BS01 rna ? GO:0000028 ... P39516 29208708
    384665 5ndv:c4 (3.3) BS02 MG ? GO:0000028 ... P39516 29208708
    384666 5ndv:c5 (3.3) BS01 rna ? GO:0000028 ... Q01855 29208708
    384667 5ndv:c6 (3.3) BS01 rna ? GO:0000462 ... P0CX51 29208708
    384668 5ndv:c7 (3.3) BS01 rna ? GO:0000028 ... P02407 29208708
    384669 5ndv:c8 (3.3) BS01 rna ? GO:0000054 ... P0CX55 29208708
    384670 5ndv:c8 (3.3) BS02 MG ? GO:0000054 ... P0CX55 29208708
    384671 5ndv:c9 (3.3) BS01 rna ? GO:0000028 ... P07280 29208708
    384672 5ndv:c9 (3.3) BS02 MG ? GO:0000028 ... P07280 29208708
    384673 5ndv:d0 (3.3) BS01 rna ? GO:0000462 ... P38701 29208708
    384674 5ndv:d1 (3.3) BS01 rna ? GO:0000447 ... P0C0V8 29208708
    384675 5ndv:d2 (3.3) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    384676 5ndv:d3 (3.3) BS01 rna ? GO:0000462 ... P0CX29 29208708
    384677 5ndv:d3 (3.3) BS02 PAR ? GO:0000462 ... P0CX29 29208708
    384678 5ndv:d3 (3.3) BS03 MG ? GO:0000462 ... P0CX29 29208708
    384679 5ndv:d4 (3.3) BS01 rna ? GO:0000462 ... P0CX31 29208708
    384680 5ndv:d4 (3.3) BS02 PAR ? GO:0000462 ... P0CX31 29208708
    384681 5ndv:d5 (3.3) BS01 rna ? N/A Q3E792 29208708
    384682 5ndv:d6 (3.3) BS01 rna ? GO:0003735 ... P39939 29208708
    384683 5ndv:d6 (3.3) BS02 ZN ? GO:0003735 ... P39939 29208708
    384684 5ndv:d7 (3.3) BS01 rna ? GO:0000028 ... P35997 29208708
    384685 5ndv:d7 (3.3) BS02 ZN ? GO:0000028 ... P35997 29208708
    384686 5ndv:d8 (3.3) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    384687 5ndv:d9 (3.3) BS01 rna ? GO:0002181 ... P41057 29208708
    384688 5ndv:d9 (3.3) BS02 ZN ? GO:0002181 ... P41057 29208708
    384689 5ndv:e0 (3.3) BS01 rna ? GO:0002181 ... P0CX33 29208708
    384690 5ndv:l2 (3.3) BS01 rna ? GO:0002181 ... P0CX45 29208708
    384691 5ndv:l2 (3.3) BS02 rna ? GO:0002181 ... P0CX45 29208708
    384692 5ndv:l2 (3.3) BS03 PAR ? GO:0002181 ... P0CX45 29208708
    384693 5ndv:l2 (3.3) BS04 MG ? GO:0002181 ... P0CX45 29208708
    384694 5ndv:l2 (3.3) BS05 MG ? GO:0002181 ... P0CX45 29208708
    384695 5ndv:l2 (3.3) BS06 MG ? GO:0002181 ... P0CX45 29208708
    384696 5ndv:l3 (3.3) BS01 rna ? GO:0000027 ... P14126 29208708
    384697 5ndv:l3 (3.3) BS02 MG ? GO:0000027 ... P14126 29208708
    384698 5ndv:l3 (3.3) BS03 MG ? GO:0000027 ... P14126 29208708
    384699 5ndv:l4 (3.3) BS01 rna ? GO:0002181 ... P10664 29208708
    384700 5ndv:l4 (3.3) BS02 rna ? GO:0002181 ... P10664 29208708
    384701 5ndv:l4 (3.3) BS03 PAR ? GO:0002181 ... P10664 29208708
    384702 5ndv:l4 (3.3) BS04 MG ? GO:0002181 ... P10664 29208708
    384703 5ndv:l4 (3.3) BS05 MG ? GO:0002181 ... P10664 29208708
    384704 5ndv:l5 (3.3) BS01 rna ? GO:0000027 ... P26321 29208708
    384705 5ndv:l5 (3.3) BS02 rna ? GO:0000027 ... P26321 29208708
    384706 5ndv:l6 (3.3) BS01 rna ? GO:0000027 ... Q02326 29208708
    384707 5ndv:l7 (3.3) BS01 rna ? GO:0000463 ... P05737 29208708
    384708 5ndv:l7 (3.3) BS02 rna ? GO:0000463 ... P05737 29208708
    384709 5ndv:l7 (3.3) BS03 MG ? GO:0000463 ... P05737 29208708
    384710 5ndv:l8 (3.3) BS01 rna ? GO:0000470 ... P17076 29208708
    384711 5ndv:l8 (3.3) BS02 rna ? GO:0000470 ... P17076 29208708
    384712 5ndv:l9 (3.3) BS01 rna ? GO:0002181 ... P05738 29208708
    384713 5ndv:m0 (3.3) BS01 rna ? GO:0000027 ... P41805 29208708
    384714 5ndv:m0 (3.3) BS02 rna ? GO:0000027 ... P41805 29208708
    384715 5ndv:m0 (3.3) BS03 PAR ? GO:0000027 ... P41805 29208708
    384716 5ndv:m0 (3.3) BS04 MG ? GO:0000027 ... P41805 29208708
    384717 5ndv:m1 (3.3) BS01 rna ? GO:0000027 ... Q3E757 29208708
    384718 5ndv:m1 (3.3) BS02 rna ? GO:0000027 ... Q3E757 29208708
    384719 5ndv:m3 (3.3) BS01 rna ? GO:0002181 ... Q12690 29208708
    384720 5ndv:m3 (3.3) BS02 rna ? GO:0002181 ... Q12690 29208708
    384721 5ndv:m4 (3.3) BS01 rna ? GO:0000027 ... P36105 29208708
    384722 5ndv:m5 (3.3) BS01 rna ? GO:0002181 ... P05748 29208708
    384723 5ndv:m5 (3.3) BS02 rna ? GO:0002181 ... P05748 29208708
    384724 5ndv:m6 (3.3) BS01 rna ? GO:0000470 ... P26784 29208708
    384725 5ndv:m7 (3.3) BS01 rna ? GO:0000448 ... P05740 29208708
    384726 5ndv:m7 (3.3) BS02 rna ? GO:0000448 ... P05740 29208708
    384727 5ndv:m7 (3.3) BS03 MG ? GO:0000448 ... P05740 29208708
    384728 5ndv:m7 (3.3) BS04 MG ? GO:0000448 ... P05740 29208708
    384729 5ndv:m7 (3.3) BS05 MG ? GO:0000448 ... P05740 29208708
    384730 5ndv:m8 (3.3) BS01 rna ? GO:0002181 ... P0CX49 29208708
    384731 5ndv:m8 (3.3) BS02 PAR ? GO:0002181 ... P0CX49 29208708
    384732 5ndv:m8 (3.3) BS03 PAR ? GO:0002181 ... P0CX49 29208708
    384733 5ndv:m9 (3.3) BS01 rna ? GO:0002181 ... P0CX82 29208708
    384734 5ndv:m9 (3.3) BS02 rna ? GO:0002181 ... P0CX82 29208708
    384735 5ndv:n0 (3.3) BS01 rna ? GO:0002181 ... P0CX23 29208708
    384736 5ndv:n0 (3.3) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384737 5ndv:n0 (3.3) BS03 MG ? GO:0002181 ... P0CX23 29208708
    384738 5ndv:n0 (3.3) BS04 MG ? GO:0002181 ... P0CX23 29208708
    384739 5ndv:n1 (3.3) BS01 rna ? GO:0002181 ... Q02753 29208708
    384740 5ndv:n1 (3.3) BS02 rna ? GO:0002181 ... Q02753 29208708
    384741 5ndv:n2 (3.3) BS01 rna ? GO:0003735 ... P05749 29208708
    384742 5ndv:n3 (3.3) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384743 5ndv:n4 (3.3) BS01 rna ? GO:0002181 ... P04449 29208708
    384744 5ndv:n4 (3.3) BS02 rna ? GO:0002181 ... P04449 29208708
    384745 5ndv:n5 (3.3) BS01 rna ? GO:0003735 ... P04456 29208708
    384746 5ndv:n5 (3.3) BS02 rna ? GO:0003735 ... P04456 29208708
    384747 5ndv:n6 (3.3) BS01 rna ? GO:0002181 ... P05743 29208708
    384748 5ndv:n6 (3.3) BS02 rna ? GO:0002181 ... P05743 29208708
    384749 5ndv:n6 (3.3) BS03 rna ? GO:0002181 ... P05743 29208708
    384750 5ndv:n7 (3.3) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384751 5ndv:n8 (3.3) BS01 rna ? GO:0002181 ... P02406 29208708
    384752 5ndv:n8 (3.3) BS02 MG ? GO:0002181 ... P02406 29208708
    384753 5ndv:n8 (3.3) BS03 MG ? GO:0002181 ... P02406 29208708
    384754 5ndv:n9 (3.3) BS01 rna ? GO:0002181 ... P05747 29208708
    384755 5ndv:o0 (3.3) BS01 rna ? GO:0002181 ... P14120 29208708
    384756 5ndv:o1 (3.3) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384757 5ndv:o2 (3.3) BS01 rna ? GO:0002181 ... P38061 29208708
    384758 5ndv:o2 (3.3) BS02 PAR ? GO:0002181 ... P38061 29208708
    384759 5ndv:o3 (3.3) BS01 rna ? GO:0000027 ... P05744 29208708
    384760 5ndv:o4 (3.3) BS01 rna ? GO:0002181 ... P87262 29208708
    384761 5ndv:o4 (3.3) BS02 ZN ? GO:0002181 ... P87262 29208708
    384762 5ndv:o4 (3.3) BS03 MG ? GO:0002181 ... P87262 29208708
    384763 5ndv:o5 (3.3) BS01 rna ? GO:0000463 ... P0CX84 29208708
    384764 5ndv:o5 (3.3) BS02 rna ? GO:0000463 ... P0CX84 29208708
    384765 5ndv:o6 (3.3) BS01 rna ? GO:0002181 ... P05745 29208708
    384766 5ndv:o7 (3.3) BS01 rna ? GO:0000448 ... P49166 29208708
    384767 5ndv:o7 (3.3) BS02 rna ? GO:0000448 ... P49166 29208708
    384768 5ndv:o7 (3.3) BS03 ZN ? GO:0000448 ... P49166 29208708
    384769 5ndv:o8 (3.3) BS01 rna ? GO:0002181 ... P49167 29208708
    384770 5ndv:o9 (3.3) BS01 rna ? GO:0002181 ... P04650 29208708
    384771 5ndv:o9 (3.3) BS02 rna ? GO:0002181 ... P04650 29208708
    384772 5ndv:q0 (3.3) BS01 rna ? GO:0003735 ... P0CH08 29208708
    384773 5ndv:q0 (3.3) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    384774 5ndv:q2 (3.3) BS01 rna ? GO:0002181 ... P0CX27 29208708
    384775 5ndv:q2 (3.3) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    384776 5ndv:q3 (3.3) BS01 rna ? GO:0002181 ... P0CX25 29208708
    384777 5ndv:q3 (3.3) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    384778 5ndv:s0 (3.3) BS01 rna ? GO:0003735 ... P32905 29208708
    384779 5ndv:s1 (3.3) BS01 rna ? GO:0003735 ... P33442 29208708
    384780 5ndv:s1 (3.3) BS02 rna ? GO:0003735 ... P33442 29208708
    384781 5ndv:s2 (3.3) BS01 rna ? GO:0003723 ... P25443 29208708
    384782 5ndv:s3 (3.3) BS01 rna ? GO:0000054 ... P05750 29208708
    384783 5ndv:s4 (3.3) BS01 rna ? GO:0002181 ... P0CX35 29208708
    384784 5ndv:s4 (3.3) BS02 MG ? GO:0002181 ... P0CX35 29208708
    384785 5ndv:s5 (3.3) BS01 rna ? GO:0000028 ... P26783 29208708
    384786 5ndv:s5 (3.3) BS02 MG ? GO:0000028 ... P26783 29208708
    384787 5ndv:s6 (3.3) BS01 rna ? GO:0000462 ... P0CX37 29208708
    384788 5ndv:s7 (3.3) BS01 rna ? GO:0002181 ... P26786 29208708
    384789 5ndv:s8 (3.3) BS01 rna ? GO:0000462 ... P0CX39 29208708
    384790 5ndv:s8 (3.3) BS02 rna ? GO:0000462 ... P0CX39 29208708
    384791 5ndv:s9 (3.3) BS01 rna ? GO:0000462 ... O13516 29208708
    384792 5ndv:sM (3.3) BS01 rna ? GO:0000723 ... P39015 29208708
    384793 5ndv:sM (3.3) BS02 rna ? GO:0000723 ... P39015 29208708
    384794 5ndv:sR (3.3) BS01 rna ? GO:0001965 ... P38011 29208708
    384795 5ndw:C0 (3.7) BS01 rna ? GO:0000054 ... Q08745 29208708
    384796 5ndw:C1 (3.7) BS01 rna ? GO:0000028 ... P0CX47 29208708
    384797 5ndw:C2 (3.7) BS01 rna ? GO:0000028 ... P48589 29208708
    384798 5ndw:C3 (3.7) BS01 rna ? GO:0000462 ... P05756 29208708
    384799 5ndw:C4 (3.7) BS01 rna ? GO:0000028 ... P39516 29208708
    384800 5ndw:C4 (3.7) BS02 MG ? GO:0000028 ... P39516 29208708

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).