SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    384801 5ndw:C5 (3.7) BS01 rna ? GO:0000028 ... Q01855 29208708
    384802 5ndw:C6 (3.7) BS01 rna ? GO:0000462 ... P0CX51 29208708
    384803 5ndw:C6 (3.7) BS02 MG ? GO:0000462 ... P0CX51 29208708
    384804 5ndw:C7 (3.7) BS01 rna ? GO:0000028 ... P02407 29208708
    384805 5ndw:C8 (3.7) BS01 rna ? GO:0000054 ... P0CX55 29208708
    384806 5ndw:C8 (3.7) BS02 MG ? GO:0000054 ... P0CX55 29208708
    384807 5ndw:C9 (3.7) BS01 rna ? GO:0000028 ... P07280 29208708
    384808 5ndw:C9 (3.7) BS02 MG ? GO:0000028 ... P07280 29208708
    384809 5ndw:D0 (3.7) BS01 rna ? GO:0003723 ... P38701 29208708
    384810 5ndw:D2 (3.7) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    384811 5ndw:D2 (3.7) BS02 MG ? GO:0002181 ... P0C0W1 29208708
    384812 5ndw:D3 (3.7) BS01 rna ? GO:0000462 ... P0CX29 29208708
    384813 5ndw:D4 (3.7) BS01 rna ? GO:0000462 ... P0CX31 29208708
    384814 5ndw:D5 (3.7) BS01 rna ? N/A Q3E792 29208708
    384815 5ndw:D6 (3.7) BS01 rna ? GO:0003735 ... P39939 29208708
    384816 5ndw:D6 (3.7) BS02 ZN ? GO:0003735 ... P39939 29208708
    384817 5ndw:D7 (3.7) BS01 rna ? GO:0000028 ... P35997 29208708
    384818 5ndw:D8 (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    384819 5ndw:D9 (3.7) BS01 rna ? GO:0002181 ... P41057 29208708
    384820 5ndw:D9 (3.7) BS02 ZN ? GO:0002181 ... P41057 29208708
    384821 5ndw:E0 (3.7) BS01 rna ? GO:0002181 ... P0CX33 29208708
    384822 5ndw:E1 (3.7) BS01 rna ? GO:0003735 ... P05759 29208708
    384823 5ndw:E1 (3.7) BS02 ZN ? GO:0003735 ... P05759 29208708
    384824 5ndw:L2 (3.7) BS01 rna ? GO:0002181 ... P0CX45 29208708
    384825 5ndw:L2 (3.7) BS02 rna ? GO:0002181 ... P0CX45 29208708
    384826 5ndw:L2 (3.7) BS03 MG ? GO:0002181 ... P0CX45 29208708
    384827 5ndw:L3 (3.7) BS01 rna ? GO:0000027 ... P14126 29208708
    384828 5ndw:L4 (3.7) BS01 rna ? GO:0002181 ... P10664 29208708
    384829 5ndw:L4 (3.7) BS02 rna ? GO:0002181 ... P10664 29208708
    384830 5ndw:L5 (3.7) BS01 rna ? GO:0000027 ... P26321 29208708
    384831 5ndw:L5 (3.7) BS02 rna ? GO:0000027 ... P26321 29208708
    384832 5ndw:L6 (3.7) BS01 rna ? GO:0000027 ... Q02326 29208708
    384833 5ndw:L6 (3.7) BS02 MG ? GO:0000027 ... Q02326 29208708
    384834 5ndw:L7 (3.7) BS01 rna ? GO:0000463 ... P05737 29208708
    384835 5ndw:L7 (3.7) BS02 rna ? GO:0000463 ... P05737 29208708
    384836 5ndw:L8 (3.7) BS01 rna ? GO:0000470 ... P17076 29208708
    384837 5ndw:L8 (3.7) BS02 rna ? GO:0000470 ... P17076 29208708
    384838 5ndw:L8 (3.7) BS03 MG ? GO:0000470 ... P17076 29208708
    384839 5ndw:L9 (3.7) BS01 rna ? GO:0002181 ... P05738 29208708
    384840 5ndw:L9 (3.7) BS02 MG ? GO:0002181 ... P05738 29208708
    384841 5ndw:M0 (3.7) BS01 rna ? GO:0000027 ... P41805 29208708
    384842 5ndw:M0 (3.7) BS02 rna ? GO:0000027 ... P41805 29208708
    384843 5ndw:M0 (3.7) BS03 MG ? GO:0000027 ... P41805 29208708
    384844 5ndw:M1 (3.7) BS01 rna ? GO:0000027 ... Q3E757 29208708
    384845 5ndw:M1 (3.7) BS02 rna ? GO:0000027 ... Q3E757 29208708
    384846 5ndw:M3 (3.7) BS01 rna ? GO:0002181 ... Q12690 29208708
    384847 5ndw:M3 (3.7) BS02 rna ? GO:0002181 ... Q12690 29208708
    384848 5ndw:M4 (3.7) BS01 rna ? GO:0000027 ... P36105 29208708
    384849 5ndw:M5 (3.7) BS01 rna ? GO:0002181 ... P05748 29208708
    384850 5ndw:M5 (3.7) BS02 rna ? GO:0002181 ... P05748 29208708
    384851 5ndw:M6 (3.7) BS01 rna ? GO:0000470 ... P26784 29208708
    384852 5ndw:M7 (3.7) BS01 rna ? GO:0000448 ... P05740 29208708
    384853 5ndw:M7 (3.7) BS02 rna ? GO:0000448 ... P05740 29208708
    384854 5ndw:M7 (3.7) BS03 MG ? GO:0000448 ... P05740 29208708
    384855 5ndw:M8 (3.7) BS01 rna ? GO:0002181 ... P0CX49 29208708
    384856 5ndw:M8 (3.7) BS02 MG ? GO:0002181 ... P0CX49 29208708
    384857 5ndw:M9 (3.7) BS01 rna ? GO:0002181 ... P0CX82 29208708
    384858 5ndw:M9 (3.7) BS02 rna ? GO:0002181 ... P0CX82 29208708
    384859 5ndw:N0 (3.7) BS01 rna ? GO:0002181 ... P0CX23 29208708
    384860 5ndw:N0 (3.7) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384861 5ndw:N1 (3.7) BS01 rna ? GO:0002181 ... Q02753 29208708
    384862 5ndw:N1 (3.7) BS02 rna ? GO:0002181 ... Q02753 29208708
    384863 5ndw:N2 (3.7) BS01 rna ? GO:0003735 ... P05749 29208708
    384864 5ndw:N3 (3.7) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384865 5ndw:N3 (3.7) BS02 rna ? GO:0002181 ... P0CX41 29208708
    384866 5ndw:N4 (3.7) BS01 rna ? GO:0002181 ... P04449 29208708
    384867 5ndw:N4 (3.7) BS02 rna ? GO:0002181 ... P04449 29208708
    384868 5ndw:N5 (3.7) BS01 rna ? GO:0003735 ... P04456 29208708
    384869 5ndw:N5 (3.7) BS02 rna ? GO:0003735 ... P04456 29208708
    384870 5ndw:N6 (3.7) BS01 rna ? GO:0002181 ... P05743 29208708
    384871 5ndw:N6 (3.7) BS02 rna ? GO:0002181 ... P05743 29208708
    384872 5ndw:N7 (3.7) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384873 5ndw:N8 (3.7) BS01 rna ? GO:0002181 ... P02406 29208708
    384874 5ndw:N8 (3.7) BS02 MG ? GO:0002181 ... P02406 29208708
    384875 5ndw:N9 (3.7) BS01 rna ? GO:0002181 ... P05747 29208708
    384876 5ndw:O0 (3.7) BS01 rna ? GO:0002181 ... P14120 29208708
    384877 5ndw:O1 (3.7) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384878 5ndw:O2 (3.7) BS01 rna ? GO:0002181 ... P38061 29208708
    384879 5ndw:O3 (3.7) BS01 rna ? GO:0000027 ... P05744 29208708
    384880 5ndw:O4 (3.7) BS01 rna ? GO:0002181 ... P87262 29208708
    384881 5ndw:O4 (3.7) BS02 ZN ? GO:0002181 ... P87262 29208708
    384882 5ndw:O5 (3.7) BS01 rna ? GO:0000463 ... P0CX84 29208708
    384883 5ndw:O5 (3.7) BS02 rna ? GO:0000463 ... P0CX84 29208708
    384884 5ndw:O6 (3.7) BS01 rna ? GO:0002181 ... P05745 29208708
    384885 5ndw:O7 (3.7) BS01 rna ? GO:0000448 ... P49166 29208708
    384886 5ndw:O7 (3.7) BS02 rna ? GO:0000448 ... P49166 29208708
    384887 5ndw:O7 (3.7) BS03 ZN ? GO:0000448 ... P49166 29208708
    384888 5ndw:O7 (3.7) BS04 MG ? GO:0000448 ... P49166 29208708
    384889 5ndw:O8 (3.7) BS01 rna ? GO:0002181 ... P49167 29208708
    384890 5ndw:O8 (3.7) BS02 MG ? GO:0002181 ... P49167 29208708
    384891 5ndw:O9 (3.7) BS01 rna ? GO:0002181 ... P04650 29208708
    384892 5ndw:O9 (3.7) BS02 rna ? GO:0002181 ... P04650 29208708
    384893 5ndw:Q0 (3.7) BS01 rna ? GO:0003735 ... P0CH08 29208708
    384894 5ndw:Q0 (3.7) BS02 ZN ? GO:0003735 ... P0CH08 29208708
    384895 5ndw:Q2 (3.7) BS01 rna ? GO:0002181 ... P0CX27 29208708
    384896 5ndw:Q2 (3.7) BS02 ZN ? GO:0002181 ... P0CX27 29208708
    384897 5ndw:Q3 (3.7) BS01 rna ? GO:0002181 ... P0CX25 29208708
    384898 5ndw:Q3 (3.7) BS02 ZN ? GO:0002181 ... P0CX25 29208708
    384899 5ndw:S0 (3.7) BS01 rna ? GO:0003735 ... P32905 29208708
    384900 5ndw:S1 (3.7) BS01 rna ? GO:0003735 ... P33442 29208708
    384901 5ndw:S2 (3.7) BS01 rna ? GO:0003723 ... P25443 29208708
    384902 5ndw:S3 (3.7) BS01 rna ? GO:0000054 ... P05750 29208708
    384903 5ndw:S4 (3.7) BS01 rna ? GO:0002181 ... P0CX35 29208708
    384904 5ndw:S4 (3.7) BS02 MG ? GO:0002181 ... P0CX35 29208708
    384905 5ndw:S5 (3.7) BS01 rna ? GO:0000028 ... P26783 29208708
    384906 5ndw:S5 (3.7) BS02 MG ? GO:0000028 ... P26783 29208708
    384907 5ndw:S5 (3.7) BS03 MG ? GO:0000028 ... P26783 29208708
    384908 5ndw:S6 (3.7) BS01 rna ? GO:0000462 ... P0CX37 29208708
    384909 5ndw:S7 (3.7) BS01 rna ? GO:0002181 ... P26786 29208708
    384910 5ndw:S8 (3.7) BS01 rna ? GO:0000462 ... P0CX39 29208708
    384911 5ndw:S8 (3.7) BS02 rna ? GO:0000462 ... P0CX39 29208708
    384912 5ndw:S9 (3.7) BS01 rna ? GO:0000462 ... O13516 29208708
    384913 5ndw:SM (3.7) BS01 rna ? GO:0000723 ... P39015 29208708
    384914 5ndw:SM (3.7) BS02 rna ? GO:0000723 ... P39015 29208708
    384915 5ndw:SR (3.7) BS01 rna ? GO:0001965 ... P38011 29208708
    384916 5ndw:c0 (3.7) BS01 rna ? GO:0000054 ... Q08745 29208708
    384917 5ndw:c1 (3.7) BS01 rna ? GO:0000028 ... P0CX47 29208708
    384918 5ndw:c2 (3.7) BS01 rna ? GO:0000028 ... P48589 29208708
    384919 5ndw:c3 (3.7) BS01 rna ? GO:0000462 ... P05756 29208708
    384920 5ndw:c3 (3.7) BS02 rna ? GO:0000462 ... P05756 29208708
    384921 5ndw:c4 (3.7) BS01 rna ? GO:0000028 ... P39516 29208708
    384922 5ndw:c5 (3.7) BS01 rna ? GO:0000028 ... Q01855 29208708
    384923 5ndw:c6 (3.7) BS01 rna ? GO:0000462 ... P0CX51 29208708
    384924 5ndw:c7 (3.7) BS01 rna ? GO:0000028 ... P02407 29208708
    384925 5ndw:c8 (3.7) BS01 rna ? GO:0000054 ... P0CX55 29208708
    384926 5ndw:c8 (3.7) BS02 MG ? GO:0000054 ... P0CX55 29208708
    384927 5ndw:c8 (3.7) BS03 MG ? GO:0000054 ... P0CX55 29208708
    384928 5ndw:c9 (3.7) BS01 rna ? GO:0000028 ... P07280 29208708
    384929 5ndw:c9 (3.7) BS02 MG ? GO:0000028 ... P07280 29208708
    384930 5ndw:d0 (3.7) BS01 rna ? GO:0003723 ... P38701 29208708
    384931 5ndw:d2 (3.7) BS01 rna ? GO:0002181 ... P0C0W1 29208708
    384932 5ndw:d3 (3.7) BS01 rna ? GO:0000462 ... P0CX29 29208708
    384933 5ndw:d4 (3.7) BS01 rna ? GO:0000462 ... P0CX31 29208708
    384934 5ndw:d5 (3.7) BS01 rna ? N/A Q3E792 29208708
    384935 5ndw:d6 (3.7) BS01 rna ? GO:0003735 ... P39939 29208708
    384936 5ndw:d6 (3.7) BS02 ZN ? GO:0003735 ... P39939 29208708
    384937 5ndw:d7 (3.7) BS01 rna ? GO:0000028 ... P35997 29208708
    384938 5ndw:d8 (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 29208708
    384939 5ndw:d9 (3.7) BS01 rna ? GO:0002181 ... P41057 29208708
    384940 5ndw:d9 (3.7) BS02 ZN ? GO:0002181 ... P41057 29208708
    384941 5ndw:e0 (3.7) BS01 rna ? GO:0002181 ... P0CX33 29208708
    384942 5ndw:e1 (3.7) BS01 rna ? GO:0003735 ... P05759 29208708
    384943 5ndw:e1 (3.7) BS02 ZN ? GO:0003735 ... P05759 29208708
    384944 5ndw:l2 (3.7) BS01 rna ? GO:0002181 ... P0CX45 29208708
    384945 5ndw:l2 (3.7) BS02 rna ? GO:0002181 ... P0CX45 29208708
    384946 5ndw:l2 (3.7) BS03 MG ? GO:0002181 ... P0CX45 29208708
    384947 5ndw:l2 (3.7) BS04 MG ? GO:0002181 ... P0CX45 29208708
    384948 5ndw:l3 (3.7) BS01 rna ? GO:0000027 ... P14126 29208708
    384949 5ndw:l3 (3.7) BS02 MG ? GO:0000027 ... P14126 29208708
    384950 5ndw:l4 (3.7) BS01 rna ? GO:0002181 ... P10664 29208708
    384951 5ndw:l4 (3.7) BS02 rna ? GO:0002181 ... P10664 29208708
    384952 5ndw:l4 (3.7) BS03 MG ? GO:0002181 ... P10664 29208708
    384953 5ndw:l5 (3.7) BS01 rna ? GO:0000027 ... P26321 29208708
    384954 5ndw:l5 (3.7) BS02 rna ? GO:0000027 ... P26321 29208708
    384955 5ndw:l6 (3.7) BS01 rna ? GO:0000027 ... Q02326 29208708
    384956 5ndw:l7 (3.7) BS01 rna ? GO:0000463 ... P05737 29208708
    384957 5ndw:l7 (3.7) BS02 rna ? GO:0000463 ... P05737 29208708
    384958 5ndw:l8 (3.7) BS01 rna ? GO:0000470 ... P17076 29208708
    384959 5ndw:l8 (3.7) BS02 rna ? GO:0000470 ... P17076 29208708
    384960 5ndw:l9 (3.7) BS01 rna ? GO:0002181 ... P05738 29208708
    384961 5ndw:m0 (3.7) BS01 rna ? GO:0000027 ... P41805 29208708
    384962 5ndw:m0 (3.7) BS02 rna ? GO:0000027 ... P41805 29208708
    384963 5ndw:m0 (3.7) BS03 MG ? GO:0000027 ... P41805 29208708
    384964 5ndw:m1 (3.7) BS01 rna ? GO:0000027 ... Q3E757 29208708
    384965 5ndw:m1 (3.7) BS02 rna ? GO:0000027 ... Q3E757 29208708
    384966 5ndw:m3 (3.7) BS01 rna ? GO:0002181 ... Q12690 29208708
    384967 5ndw:m3 (3.7) BS02 rna ? GO:0002181 ... Q12690 29208708
    384968 5ndw:m4 (3.7) BS01 rna ? GO:0000027 ... P36105 29208708
    384969 5ndw:m5 (3.7) BS01 rna ? GO:0002181 ... P05748 29208708
    384970 5ndw:m5 (3.7) BS02 rna ? GO:0002181 ... P05748 29208708
    384971 5ndw:m6 (3.7) BS01 rna ? GO:0000470 ... P26784 29208708
    384972 5ndw:m7 (3.7) BS01 rna ? GO:0000448 ... P05740 29208708
    384973 5ndw:m7 (3.7) BS02 rna ? GO:0000448 ... P05740 29208708
    384974 5ndw:m7 (3.7) BS03 MG ? GO:0000448 ... P05740 29208708
    384975 5ndw:m8 (3.7) BS01 rna ? GO:0002181 ... P0CX49 29208708
    384976 5ndw:m9 (3.7) BS01 rna ? GO:0002181 ... P0CX82 29208708
    384977 5ndw:m9 (3.7) BS02 rna ? GO:0002181 ... P0CX82 29208708
    384978 5ndw:n0 (3.7) BS01 rna ? GO:0002181 ... P0CX23 29208708
    384979 5ndw:n0 (3.7) BS02 rna ? GO:0002181 ... P0CX23 29208708
    384980 5ndw:n1 (3.7) BS01 rna ? GO:0002181 ... Q02753 29208708
    384981 5ndw:n1 (3.7) BS02 rna ? GO:0002181 ... Q02753 29208708
    384982 5ndw:n2 (3.7) BS01 rna ? GO:0003735 ... P05749 29208708
    384983 5ndw:n3 (3.7) BS01 rna ? GO:0002181 ... P0CX41 29208708
    384984 5ndw:n4 (3.7) BS01 rna ? GO:0002181 ... P04449 29208708
    384985 5ndw:n4 (3.7) BS02 rna ? GO:0002181 ... P04449 29208708
    384986 5ndw:n5 (3.7) BS01 rna ? GO:0003735 ... P04456 29208708
    384987 5ndw:n5 (3.7) BS02 rna ? GO:0003735 ... P04456 29208708
    384988 5ndw:n6 (3.7) BS01 rna ? GO:0002181 ... P05743 29208708
    384989 5ndw:n6 (3.7) BS02 rna ? GO:0002181 ... P05743 29208708
    384990 5ndw:n7 (3.7) BS01 rna ? GO:0002181 ... P0C2H6 29208708
    384991 5ndw:n7 (3.7) BS02 MG ? GO:0002181 ... P0C2H6 29208708
    384992 5ndw:n8 (3.7) BS01 rna ? GO:0002181 ... P02406 29208708
    384993 5ndw:n8 (3.7) BS02 MG ? GO:0002181 ... P02406 29208708
    384994 5ndw:n9 (3.7) BS01 rna ? GO:0002181 ... P05747 29208708
    384995 5ndw:o0 (3.7) BS01 rna ? GO:0002181 ... P14120 29208708
    384996 5ndw:o1 (3.7) BS01 rna ? GO:0002181 ... P0C2H8 29208708
    384997 5ndw:o2 (3.7) BS01 rna ? GO:0002181 ... P38061 29208708
    384998 5ndw:o3 (3.7) BS01 rna ? GO:0000027 ... P05744 29208708
    384999 5ndw:o4 (3.7) BS01 rna ? GO:0002181 ... P87262 29208708
    385000 5ndw:o4 (3.7) BS02 MG ? GO:0002181 ... P87262 29208708

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).