SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    385601 5niu:A (2.01) BS01 8YZ ? N/A Q9NZQ7 29069777 BindingDB: IC50=2.3nM
    385602 5niu:B (2.01) BS01 8YZ ? N/A Q9NZQ7 29069777 BindingDB: IC50=2.3nM
    385603 5niu:C (2.01) BS01 8YZ ? N/A Q9NZQ7 29069777 BindingDB: IC50=2.3nM
    385604 5niu:D (2.01) BS01 8YZ ? N/A Q9NZQ7 29069777 BindingDB: IC50=2.3nM
    385605 5niw:A (1.8) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 29291138
    385606 5niw:A (1.8) BS02 OXY 1.1.3.4 GO:0005576 ... P13006 29291138
    385607 5niy:A (1.7) BS01 GNP 3.6.5.4 GO:0005525 ... P10121 30146170
    385608 5niz:A (1.95) BS01 8YT ? GO:0000976 ... P9WMC1 29182187
    385609 5nj0:A (2.1) BS01 8YW ? GO:0000976 ... P9WMC1 29182187
    385610 5nj1:A (1.85) BS01 A6R 3.2.1.17 GO:0003796 ... P00698 30943017
    385611 5nj2:A (1.19) BS01 PO4 3.5.2.6 GO:0005576 ... P9WKD3 29087696
    385612 5nj2:B (1.19) BS01 PO4 3.5.2.6 GO:0005576 ... P9WKD3 29087696
    385613 5nj2:B (1.19) BS02 PO4 3.5.2.6 GO:0005576 ... P9WKD3 29087696
    385614 5nj4:C (2.4) BS01 HEC ? GO:0005506 ... P07173 28781082
    385615 5nj4:C (2.4) BS02 HEC ? GO:0005506 ... P07173 28781082
    385616 5nj4:C (2.4) BS03 HEC ? GO:0005506 ... P07173 28781082
    385617 5nj4:C (2.4) BS04 HEC ? GO:0005506 ... P07173 28781082
    385618 5nj4:L (2.4) BS01 BCB ? GO:0009772 ... P06009 28781082
    385619 5nj4:L (2.4) BS02 BCB ? GO:0009772 ... P06009 28781082
    385620 5nj4:L (2.4) BS03 BPB ? GO:0009772 ... P06009 28781082
    385621 5nj4:L (2.4) BS04 FE2 ? GO:0009772 ... P06009 28781082
    385622 5nj4:L (2.4) BS05 BCB ? GO:0009772 ... P06009 28781082
    385623 5nj4:L (2.4) BS06 BPB ? GO:0009772 ... P06009 28781082
    385624 5nj4:M (2.4) BS01 BCB ? GO:0009772 ... P06010 28781082
    385625 5nj4:M (2.4) BS02 BPB ? GO:0009772 ... P06010 28781082
    385626 5nj4:M (2.4) BS03 FE2 ? GO:0009772 ... P06010 28781082
    385627 5nj4:M (2.4) BS04 MQ7 ? GO:0009772 ... P06010 28781082
    385628 5nj4:M (2.4) BS05 BCB ? GO:0009772 ... P06010 28781082
    385629 5nj4:M (2.4) BS06 BCB ? GO:0009772 ... P06010 28781082
    385630 5nj4:M (2.4) BS07 BPB ? GO:0009772 ... P06010 28781082
    385631 5nj4:M (2.4) BS08 NS5 ? GO:0009772 ... P06010 28781082
    385632 5nj5:A (1.9) BS01 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385633 5nj5:C (1.9) BS01 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385634 5nj7:A (2.15) BS01 A6R 4.6.1.18 GO:0003676 ... P61823 30943017
    385635 5nj7:B (2.15) BS01 A6R 4.6.1.18 GO:0003676 ... P61823 30943017
    385636 5nj7:B (2.15) BS02 A6R 4.6.1.18 GO:0003676 ... P61823 30943017
    385637 5nj8:A (3.3) BS01 dna ? GO:0006355 ... P35869 28602820
    385638 5nj8:A (3.3) BS02 dna ? GO:0006355 ... P35869 28602820
    385639 5nj8:A (3.3) BS03 ER3 ? GO:0006355 ... P35869 28602820
    385640 5nj8:B (3.3) BS01 dna ? GO:0003700 ... P27540 28602820
    385641 5nj8:B (3.3) BS02 dna ? GO:0003700 ... P27540 28602820
    385642 5nj8:C (3.3) BS01 dna ? GO:0006355 ... P35869 28602820
    385643 5nj8:C (3.3) BS02 dna ? GO:0006355 ... P35869 28602820
    385644 5nj8:C (3.3) BS03 ER3 ? GO:0006355 ... P35869 28602820
    385645 5nj8:C (3.3) BS04 ER3 ? GO:0006355 ... P35869 28602820
    385646 5nj8:D (3.3) BS01 dna ? GO:0003700 ... P27540 28602820
    385647 5nj8:D (3.3) BS02 dna ? GO:0003700 ... P27540 28602820
    385648 5nj9:A (1.25) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385649 5nj9:A (1.25) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385650 5nj9:C (1.25) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385651 5nj9:C (1.25) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385652 5nja:A (1.4) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385653 5nja:A (1.4) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385654 5nja:B (1.4) BS01 peptide 3.4.-.- GO:0005515 ... P0AFK0 28943336
    385655 5nja:C (1.4) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385656 5nja:C (1.4) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385657 5nja:D (1.4) BS01 peptide 3.4.-.- GO:0005515 ... P0AFK0 28943336
    385658 5njb:A (1.5) BS01 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385659 5njb:A (1.5) BS02 BB2 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385660 5njb:C (1.5) BS01 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385661 5njb:C (1.5) BS02 BB2 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385662 5njc:A (1.35) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385663 5njc:A (1.35) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385664 5njc:C (1.35) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385665 5njc:C (1.35) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385666 5nje:A (1.978) BS01 8Z5 2.7.11.21 N/A P53350 31685831
    385667 5njf:A (1.42) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385668 5njf:A (1.42) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385669 5njf:C (1.42) BS01 peptide 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385670 5njf:C (1.42) BS02 ZN 3.4.-.- GO:0005506 ... P0AGG8 28943336
    385671 5njh:A (2.394) BS01 GTP 3.6.5.- GO:0000226 ... P81947 28579361
    385672 5njh:B (2.394) BS01 GDP ? GO:0000226 ... Q6B856 28579361
    385673 5njh:B (2.394) BS02 8Z8 ? GO:0000226 ... Q6B856 28579361 MOAD: Ka=180000M^-1
    385674 5njh:C (2.394) BS01 8Z8 3.6.5.- GO:0000226 ... P81947 28579361
    385675 5njh:C (2.394) BS02 GTP 3.6.5.- GO:0000226 ... P81947 28579361
    385676 5njh:D (2.394) BS01 GDP ? GO:0000226 ... Q6B856 28579361
    385677 5njh:F (2.394) BS01 ACP N/A GO:0036211 ... N/A 28579361
    385678 5nji:A (1.6) BS01 8Z2 2.3.1.292 N/A P96202 28377293
    385679 5njj:A (2.7) BS01 peptide ? N/A P49757 29269425
    385680 5njj:A (2.7) BS02 peptide ? N/A P49757 29269425
    385681 5njj:B (2.7) BS01 peptide ? N/A P49757 29269425
    385682 5njj:C (2.7) BS01 peptide ? N/A P49757 29269425
    385683 5njj:C (2.7) BS02 peptide ? N/A P49757 29269425
    385684 5njj:D (2.7) BS01 peptide ? N/A P49757 29269425
    385685 5njj:D (2.7) BS02 peptide ? N/A P49757 29269425
    385686 5njk:A (3.13) BS01 peptide ? N/A P49757 29269425
    385687 5njk:B (3.13) BS01 peptide ? N/A P49757 29269425
    385688 5njk:C (3.13) BS01 peptide ? N/A P49757 29269425
    385689 5njk:D (3.13) BS01 peptide ? N/A P49757 29269425
    385690 5njk:E (3.13) BS01 peptide ? N/A P49757 29269425
    385691 5njk:E (3.13) BS02 peptide ? N/A P49757 29269425
    385692 5njk:F (3.13) BS01 peptide ? N/A P49757 29269425
    385693 5njt:C (3.8) BS01 rna ? GO:0003676 ... P21465 28468753
    385694 5njt:D (3.8) BS01 rna ? GO:0003723 ... P21466 28468753
    385695 5njt:E (3.8) BS01 rna ? GO:0003723 ... P21467 28468753
    385696 5njt:G (3.8) BS01 rna ? GO:0000028 ... P21469 28468753
    385697 5njt:H (3.8) BS01 rna ? GO:0003735 ... P12879 28468753
    385698 5njt:I (3.8) BS01 rna ? GO:0003723 ... P21470 28468753
    385699 5njt:J (3.8) BS01 rna ? GO:0000049 ... P21471 28468753
    385700 5njt:K (3.8) BS01 rna ? GO:0003735 ... P04969 28468753
    385701 5njt:L (3.8) BS01 rna ? GO:0000049 ... P21472 28468753
    385702 5njt:M (3.8) BS01 rna ? GO:0000049 ... P20282 28468753
    385703 5njt:N (3.8) BS01 rna ? GO:0003735 ... P12878 28468753
    385704 5njt:O (3.8) BS01 rna ? GO:0003735 ... P21473 28468753
    385705 5njt:P (3.8) BS01 rna ? GO:0003735 ... P21474 28468753
    385706 5njt:Q (3.8) BS01 rna ? GO:0003735 ... P12874 28468753
    385707 5njt:R (3.8) BS01 rna ? GO:0003735 ... P21475 28468753
    385708 5njt:S (3.8) BS01 rna ? GO:0003723 ... P21476 28468753
    385709 5njt:T (3.8) BS01 rna ? GO:0003723 ... P21477 28468753
    385710 5njt:W (3.8) BS01 rna ? GO:0002181 ... P42919 28468753
    385711 5njt:W (3.8) BS02 rna ? GO:0002181 ... P42919 28468753
    385712 5njt:X (3.8) BS01 rna ? GO:0003735 ... P42920 28468753
    385713 5njt:Y (3.8) BS01 rna ? GO:0003735 ... P42921 28468753
    385714 5njt:Z (3.8) BS01 rna ? GO:0000049 ... P12877 28468753
    385715 5njt:Z (3.8) BS02 rna ? GO:0000049 ... P12877 28468753
    385716 5njt:a (3.8) BS01 rna ? GO:0002181 ... P46898 28468753
    385717 5njt:b (3.8) BS01 rna ? GO:0003735 ... P42923 28468753
    385718 5njt:c (3.8) BS01 rna ? GO:0003729 ... P70974 28468753
    385719 5njt:d (3.8) BS01 rna ? GO:0003735 ... P12875 28468753
    385720 5njt:d (3.8) BS02 rna ? GO:0003735 ... P12875 28468753
    385721 5njt:e (3.8) BS01 rna ? GO:0003735 ... P19946 28468753
    385722 5njt:f (3.8) BS01 rna ? GO:0000049 ... P14577 28468753
    385723 5njt:f (3.8) BS02 rna ? GO:0000049 ... P14577 28468753
    385724 5njt:g (3.8) BS01 rna ? GO:0003735 ... P20277 28468753
    385725 5njt:h (3.8) BS01 rna ? GO:0003735 ... P46899 28468753
    385726 5njt:h (3.8) BS02 rna ? GO:0003735 ... P46899 28468753
    385727 5njt:i (3.8) BS01 rna ? GO:0003735 ... O31742 28468753
    385728 5njt:i (3.8) BS02 rna ? GO:0003735 ... O31742 28468753
    385729 5njt:j (3.8) BS01 rna ? GO:0000027 ... P55873 28468753
    385730 5njt:k (3.8) BS01 rna ? GO:0003723 ... P26908 28468753
    385731 5njt:l (3.8) BS01 rna ? GO:0003735 ... P42060 28468753
    385732 5njt:m (3.8) BS01 rna ? GO:0003735 ... P42924 28468753
    385733 5njt:n (3.8) BS01 rna ? GO:0003677 ... P0CI78 28468753
    385734 5njt:o (3.8) BS01 rna ? GO:0003735 ... P05657 28468753
    385735 5njt:o (3.8) BS02 rna ? GO:0003735 ... P05657 28468753
    385736 5njt:p (3.8) BS01 rna ? GO:0003735 ... O34687 28468753
    385737 5njt:q (3.8) BS01 rna ? GO:0003735 ... P56849 28468753
    385738 5njt:r (3.8) BS01 rna ? GO:0003735 ... P05647 28468753
    385739 5njt:s (3.8) BS01 rna ? GO:0003735 ... P55874 28468753
    385740 5njt:t (3.8) BS01 rna ? GO:0003735 ... P20278 28468753
    385741 5njt:u (3.8) BS01 rna ? GO:0003735 ... P37807 28468753
    385742 5njt:v (3.8) BS01 rna ? GO:0003735 ... P12873 28468753
    385743 5njt:w (3.8) BS01 rna ? GO:0003735 ... P19947 28468753
    385744 5njt:x (3.8) BS01 rna ? GO:0044238 ... P28368 28468753
    385745 5njt:y (3.8) BS01 rna ? GO:0003735 ... Q03223 28468753
    385746 5nju:A (2.1) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385747 5nju:A (2.1) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385748 5nju:B (2.1) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385749 5nju:B (2.1) BS02 MG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385750 5njv:A (2.0) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385751 5njv:B (2.0) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385752 5njv:C (2.0) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385753 5njv:D (2.0) BS01 SAM 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... A0A024B7W1 29423037
    385754 5njw:A (1.25) BS01 ZN ? N/A Q89GW5 N/A
    385755 5njw:A (1.25) BS02 ZN ? N/A Q89GW5 N/A
    385756 5njw:A (1.25) BS03 ZN ? N/A Q89GW5 N/A
    385757 5njw:B (1.25) BS01 ZN ? N/A Q89GW5 N/A
    385758 5njw:B (1.25) BS02 ZN ? N/A Q89GW5 N/A
    385759 5njw:B (1.25) BS03 ZN ? N/A Q89GW5 N/A
    385760 5njx:A (2.49) BS01 peptide 5.2.1.8 GO:0003755 ... Q13451 29079741
    385761 5njz:A (1.768) BS01 8ZH 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=16.6nM
    385762 5nk0:A (1.597) BS01 91E 2.7.10.1 GO:0004672 ... P29317 28544567
    385763 5nk1:A (1.548) BS01 90N 2.7.10.1 GO:0004672 ... P29317 28544567
    385764 5nk2:A (1.649) BS01 8ZZ 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.182uM
    385765 5nk3:A (1.586) BS01 92Q 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=38.02nM
    385766 5nk4:A (1.45) BS01 90E 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=1.995nM
    385767 5nk5:A (1.329) BS01 90K 2.7.10.1 GO:0004672 ... P29317 28544567
    385768 5nk6:A (1.267) BS01 90W 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.158uM
    385769 5nk7:A (1.889) BS01 8ZZ 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.468nM
    385770 5nk8:A (1.761) BS01 90Z 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.229uM
    385771 5nk9:A (1.588) BS01 912 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.724uM
    385772 5nka:A (1.377) BS01 91H 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=3.47uM
    385773 5nkb:A (1.5) BS01 8ZT 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=0.759nM
    385774 5nkc:A (1.448) BS01 90T 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=18.62nM
    385775 5nkd:A (1.408) BS01 91K 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=26.3nM
    385776 5nke:A (1.39) BS01 90B 2.7.10.1 GO:0004672 ... P29317 28544567
    385777 5nkf:A (1.099) BS01 8ZN 2.7.10.1 GO:0004672 ... P29317 28544567
    385778 5nkg:A (1.1) BS01 8ZK 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=20.89nM
    385779 5nkh:A (1.29) BS01 8ZQ 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=25.7nM
    385780 5nki:A (1.675) BS01 8ZW 2.7.10.1 GO:0004672 ... P29317 28544567 MOAD: Kd=18.62nM
    385781 5nkk:D (2.64) BS01 POP ? GO:0000184 ... Q9XWJ1 28389433
    385782 5nkk:F (2.64) BS01 GDP ? GO:0000184 ... Q9XWJ1 28389433
    385783 5nkl:A (1.7) BS01 dna 2.7.7.7 GO:0001882 ... P19821 28594080
    385784 5nkl:A (1.7) BS02 dna 2.7.7.7 GO:0001882 ... P19821 28594080
    385785 5nkl:A (1.7) BS03 MG 2.7.7.7 GO:0001882 ... P19821 28594080
    385786 5nkl:A (1.7) BS04 MG 2.7.7.7 GO:0001882 ... P19821 28594080
    385787 5nkl:A (1.7) BS05 91T 2.7.7.7 GO:0001882 ... P19821 28594080
    385788 5nkl:A (1.7) BS06 91R 2.7.7.7 GO:0001882 ... P19821 28594080
    385789 5nkn:A (2.2) BS01 LOC ? GO:0005506 ... P80188 30517073 MOAD: Kd=120pM
    385790 5nkp:A (2.8) BS01 peptide ? N/A Q9UH77 N/A
    385791 5nkp:B (2.8) BS01 peptide ? N/A Q9UH77 N/A
    385792 5nkq:A (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    385793 5nkq:B (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    385794 5nkq:B (2.17) BS02 F ? GO:0005886 ... Q7VYU0 26344196
    385795 5nkq:C (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    385796 5nkq:C (2.17) BS02 F ? GO:0005886 ... Q7VYU0 26344196
    385797 5nku:A (2.0) BS01 HEM ? GO:0046872 ... B8HNS6 29142780
    385798 5nku:B (2.0) BS01 HEM ? GO:0046872 ... B8HNS6 29142780
    385799 5nkv:A (2.0) BS01 HEM ? GO:0016491 ... B8HNS6 29142780
    385800 5nkv:B (2.0) BS01 HEM ? GO:0016491 ... B8HNS6 29142780

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).